Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20071 and SM_b20072 are separated by 471 nucleotides SM_b20072 and SM_b20073 are separated by 162 nucleotides
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.628 kb on + strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.731 kb on - strand at 80.754 kb on - strand at 80.848 kb on + strand at 81.217 kb on - strand at 81.392 kb on + strand, within SM_b20072 at 81.392 kb on + strand, within SM_b20072 at 81.393 kb on - strand, within SM_b20072 at 81.721 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 82.157 kb on + strand at 82.157 kb on + strand at 82.158 kb on - strand at 82.158 kb on - strand at 82.172 kb on + strand at 82.278 kb on + strand at 82.279 kb on - strand at 82.279 kb on - strand at 82.281 kb on - strand at 82.380 kb on + strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.450 kb on + strand, within SM_b20073 at 82.450 kb on + strand, within SM_b20073 at 82.451 kb on - strand, within SM_b20073 at 82.547 kb on + strand, within SM_b20073 at 82.548 kb on - strand, within SM_b20073 at 82.617 kb on + strand, within SM_b20073 at 82.618 kb on - strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 80,322 + SM_b20071 0.63 -0.1 80,322 + SM_b20071 0.63 +0.2 80,322 + SM_b20071 0.63 -2.5 80,322 + SM_b20071 0.63 -2.3 80,323 - SM_b20071 0.63 +0.0 80,323 - SM_b20071 0.63 +0.9 80,323 - SM_b20071 0.63 -1.6 80,628 + SM_b20071 0.88 -0.3 80,629 - SM_b20071 0.88 -2.0 80,629 - SM_b20071 0.88 -1.1 80,731 - -0.1 80,754 - +1.1 80,848 + -1.1 81,217 - +0.4 81,392 + SM_b20072 0.16 -0.7 81,392 + SM_b20072 0.16 +0.1 81,393 - SM_b20072 0.17 -1.0 81,721 - SM_b20072 0.52 +0.0 81,853 - SM_b20072 0.66 -0.4 81,853 - SM_b20072 0.66 -0.7 82,157 + -0.8 82,157 + -0.1 82,158 - -0.7 82,158 - +0.6 82,172 + -0.3 82,278 + +2.7 82,279 - -1.0 82,279 - +0.8 82,281 - +0.4 82,380 + -1.4 82,381 - +0.5 82,381 - +0.6 82,381 - +0.1 82,450 + SM_b20073 0.14 -0.4 82,450 + SM_b20073 0.14 +0.5 82,451 - SM_b20073 0.14 -0.4 82,547 + SM_b20073 0.25 +0.9 82,548 - SM_b20073 0.25 +0.1 82,617 + SM_b20073 0.33 -1.0 82,618 - SM_b20073 0.33 -1.4 82,716 + SM_b20073 0.45 +0.3 82,716 + SM_b20073 0.45 +0.4 82,971 + SM_b20073 0.75 -0.2 82,971 + SM_b20073 0.75 -1.3 82,978 + SM_b20073 0.75 +0.4 82,978 + SM_b20073 0.75 +0.4
Or see this region's nucleotide sequence