Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04530

Experiment: Iron limitation, H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04525 and MMP_RS04530 are separated by 41 nucleotidesMMP_RS04530 and MMP_RS04535 are separated by 120 nucleotides MMP_RS04525: MMP_RS04525 - D-2-hydroxyacid dehydrogenase, at 861,628 to 862,584 _RS04525 MMP_RS04530: MMP_RS04530 - ABC transporter permease, at 862,626 to 863,819 _RS04530 MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854 _RS04535 Position (kb) 862 863 864Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 861.642 kb on + strandat 861.715 kb on - strandat 861.715 kb on - strandat 861.716 kb on + strandat 861.740 kb on - strand, within MMP_RS04525at 861.774 kb on - strand, within MMP_RS04525at 861.775 kb on + strand, within MMP_RS04525at 861.780 kb on - strand, within MMP_RS04525at 861.781 kb on + strand, within MMP_RS04525at 861.786 kb on + strand, within MMP_RS04525at 861.786 kb on + strand, within MMP_RS04525at 861.825 kb on + strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.829 kb on - strand, within MMP_RS04525at 861.830 kb on + strand, within MMP_RS04525at 861.840 kb on - strand, within MMP_RS04525at 861.853 kb on - strand, within MMP_RS04525at 861.894 kb on + strand, within MMP_RS04525at 861.900 kb on + strand, within MMP_RS04525at 861.945 kb on + strand, within MMP_RS04525at 861.956 kb on - strand, within MMP_RS04525at 861.956 kb on - strand, within MMP_RS04525at 861.957 kb on + strand, within MMP_RS04525at 861.985 kb on - strand, within MMP_RS04525at 861.985 kb on - strand, within MMP_RS04525at 861.986 kb on + strand, within MMP_RS04525at 861.986 kb on + strand, within MMP_RS04525at 861.987 kb on - strand, within MMP_RS04525at 861.999 kb on + strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.145 kb on - strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.146 kb on + strand, within MMP_RS04525at 862.152 kb on + strand, within MMP_RS04525at 862.152 kb on + strand, within MMP_RS04525at 862.446 kb on + strand, within MMP_RS04525at 862.446 kb on + strand, within MMP_RS04525at 862.456 kb on + strand, within MMP_RS04525at 862.461 kb on - strand, within MMP_RS04525at 862.461 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.465 kb on - strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.466 kb on + strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.467 kb on - strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.468 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.470 kb on + strand, within MMP_RS04525at 862.564 kb on + strandat 862.566 kb on + strandat 862.578 kb on - strandat 862.585 kb on - strandat 862.589 kb on - strandat 862.594 kb on + strandat 862.594 kb on + strandat 862.667 kb on + strandat 862.693 kb on - strandat 862.714 kb on - strandat 862.714 kb on - strandat 862.715 kb on + strandat 862.715 kb on + strandat 862.718 kb on - strandat 862.767 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.771 kb on - strand, within MMP_RS04530at 862.883 kb on + strand, within MMP_RS04530at 862.976 kb on + strand, within MMP_RS04530at 863.006 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.263 kb on + strand, within MMP_RS04530at 863.267 kb on - strand, within MMP_RS04530at 863.309 kb on + strand, within MMP_RS04530at 863.510 kb on - strand, within MMP_RS04530at 863.728 kb on - strandat 863.740 kb on - strandat 863.740 kb on - strandat 863.740 kb on - strandat 863.752 kb on - strandat 863.753 kb on + strandat 863.753 kb on + strandat 863.760 kb on - strandat 863.801 kb on - strandat 863.802 kb on + strandat 863.836 kb on + strandat 863.847 kb on + strandat 863.849 kb on - strandat 863.874 kb on + strandat 863.915 kb on + strandat 863.920 kb on + strandat 863.924 kb on + strandat 863.969 kb on - strandat 863.970 kb on + strandat 863.994 kb on - strandat 863.995 kb on + strandat 864.010 kb on - strandat 864.011 kb on + strandat 864.047 kb on - strandat 864.048 kb on + strandat 864.075 kb on + strandat 864.245 kb on + strandat 864.290 kb on + strandat 864.424 kb on - strandat 864.425 kb on + strandat 864.700 kb on - strandat 864.729 kb on + strandat 864.763 kb on - strandat 864.766 kb on - strandat 864.767 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strandat 864.771 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron limitation, H2 media
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861,642 + +0.7
861,715 - -1.9
861,715 - +0.0
861,716 + +1.4
861,740 - MMP_RS04525 0.12 -0.2
861,774 - MMP_RS04525 0.15 +0.6
861,775 + MMP_RS04525 0.15 -0.9
861,780 - MMP_RS04525 0.16 +0.0
861,781 + MMP_RS04525 0.16 -0.1
861,786 + MMP_RS04525 0.17 -0.2
861,786 + MMP_RS04525 0.17 -0.1
861,825 + MMP_RS04525 0.21 -0.3
861,829 - MMP_RS04525 0.21 -0.4
861,829 - MMP_RS04525 0.21 +0.1
861,829 - MMP_RS04525 0.21 -0.6
861,830 + MMP_RS04525 0.21 +0.3
861,840 - MMP_RS04525 0.22 +0.1
861,853 - MMP_RS04525 0.24 -1.2
861,894 + MMP_RS04525 0.28 -0.1
861,900 + MMP_RS04525 0.28 +0.2
861,945 + MMP_RS04525 0.33 -0.4
861,956 - MMP_RS04525 0.34 +0.5
861,956 - MMP_RS04525 0.34 +0.5
861,957 + MMP_RS04525 0.34 +0.1
861,985 - MMP_RS04525 0.37 +0.5
861,985 - MMP_RS04525 0.37 +0.5
861,986 + MMP_RS04525 0.37 +0.2
861,986 + MMP_RS04525 0.37 +0.2
861,987 - MMP_RS04525 0.38 -0.1
861,999 + MMP_RS04525 0.39 -0.5
862,145 - MMP_RS04525 0.54 +0.1
862,145 - MMP_RS04525 0.54 -0.6
862,145 - MMP_RS04525 0.54 +0.2
862,146 + MMP_RS04525 0.54 -0.6
862,146 + MMP_RS04525 0.54 +1.1
862,146 + MMP_RS04525 0.54 -0.5
862,152 + MMP_RS04525 0.55 +0.5
862,152 + MMP_RS04525 0.55 +0.3
862,446 + MMP_RS04525 0.85 -0.3
862,446 + MMP_RS04525 0.85 +0.1
862,456 + MMP_RS04525 0.87 +0.4
862,461 - MMP_RS04525 0.87 +0.4
862,461 - MMP_RS04525 0.87 -0.2
862,465 - MMP_RS04525 0.87 -0.4
862,465 - MMP_RS04525 0.87 +0.2
862,465 - MMP_RS04525 0.87 -0.9
862,465 - MMP_RS04525 0.87 -0.2
862,466 + MMP_RS04525 0.88 +0.6
862,466 + MMP_RS04525 0.88 +0.1
862,466 + MMP_RS04525 0.88 -0.1
862,467 - MMP_RS04525 0.88 -0.1
862,467 - MMP_RS04525 0.88 +0.2
862,467 - MMP_RS04525 0.88 -0.6
862,467 - MMP_RS04525 0.88 +0.7
862,468 + MMP_RS04525 0.88 +0.1
862,468 + MMP_RS04525 0.88 -0.4
862,468 + MMP_RS04525 0.88 +0.1
862,470 + MMP_RS04525 0.88 -1.0
862,470 + MMP_RS04525 0.88 -0.1
862,470 + MMP_RS04525 0.88 -0.2
862,470 + MMP_RS04525 0.88 -0.1
862,564 + +0.2
862,566 + -0.1
862,578 - -0.3
862,585 - -0.9
862,589 - +0.7
862,594 + -0.4
862,594 + +1.0
862,667 + +0.2
862,693 - +0.1
862,714 - +0.3
862,714 - -0.2
862,715 + +0.3
862,715 + -0.4
862,718 - +0.1
862,767 - MMP_RS04530 0.12 +0.7
862,771 - MMP_RS04530 0.12 -0.4
862,771 - MMP_RS04530 0.12 +0.1
862,771 - MMP_RS04530 0.12 +0.2
862,883 + MMP_RS04530 0.22 +0.5
862,976 + MMP_RS04530 0.29 +0.1
863,006 + MMP_RS04530 0.32 +0.1
863,263 + MMP_RS04530 0.53 +0.5
863,263 + MMP_RS04530 0.53 +0.2
863,267 - MMP_RS04530 0.54 +0.1
863,309 + MMP_RS04530 0.57 +0.7
863,510 - MMP_RS04530 0.74 +0.6
863,728 - -0.6
863,740 - +0.4
863,740 - +0.1
863,740 - -0.5
863,752 - +0.4
863,753 + -0.2
863,753 + +0.2
863,760 - +0.3
863,801 - +0.5
863,802 + +0.7
863,836 + +0.5
863,847 + -0.4
863,849 - -0.2
863,874 + +0.4
863,915 + -2.1
863,920 + -0.9
863,924 + -0.2
863,969 - -1.9
863,970 + -0.8
863,994 - -3.1
863,995 + -2.9
864,010 - -2.2
864,011 + -0.9
864,047 - -0.9
864,048 + -1.6
864,075 + -3.0
864,245 + -1.8
864,290 + -1.9
864,424 - -0.7
864,425 + -1.0
864,700 - -1.4
864,729 + -2.4
864,763 - -1.0
864,766 - -4.1
864,767 + -2.4
864,771 + -1.7
864,771 + -2.8
864,771 + -1.9

Or see this region's nucleotide sequence