Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15425

Experiment: Anaerobic, acetate donor; nitrate and iron electron acceptors

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, acetate donor; nitrate and iron electron acceptors
3,405,522	+				-2.1
3,405,522	+				-0.5
3,405,607	-				-0.4
3,405,607	-				+0.1
3,405,617	+				-1.1
3,405,618	-				-0.1
3,405,893	+		LRK54_RS15420	0.20	-1.1
3,405,893	+		LRK54_RS15420	0.20	-0.0
3,405,908	+		LRK54_RS15420	0.22	+0.1
3,405,975	+		LRK54_RS15420	0.33	+0.6
3,405,975	+		LRK54_RS15420	0.33	+0.0
3,405,975	+		LRK54_RS15420	0.33	-0.3
3,405,975	+		LRK54_RS15420	0.33	-0.6
3,405,975	+		LRK54_RS15420	0.33	+1.2
3,405,975	+		LRK54_RS15420	0.33	-0.1
3,405,976	-		LRK54_RS15420	0.33	-1.0
3,405,976	-		LRK54_RS15420	0.33	-0.1
3,405,976	-		LRK54_RS15420	0.33	+0.3
3,405,976	-		LRK54_RS15420	0.33	-1.7
3,405,976	-		LRK54_RS15420	0.33	-0.5
3,405,976	-		LRK54_RS15420	0.33	+0.3
3,405,976	-		LRK54_RS15420	0.33	-1.6
3,405,976	-		LRK54_RS15420	0.33	+0.1
3,405,976	-		LRK54_RS15420	0.33	-2.1
3,405,976	-		LRK54_RS15420	0.33	-0.1
3,406,043	-		LRK54_RS15420	0.44	-1.0
3,406,222	-		LRK54_RS15420	0.72	+1.9
3,406,257	-		LRK54_RS15420	0.78	-0.7
3,406,281	+		LRK54_RS15420	0.81	-0.3
3,406,281	+		LRK54_RS15420	0.81	+0.0
3,406,281	+		LRK54_RS15420	0.81	-0.3
3,406,281	+		LRK54_RS15420	0.81	-1.1
3,406,281	+		LRK54_RS15420	0.81	+0.4
3,406,281	+		LRK54_RS15420	0.81	+0.8
3,406,281	+		LRK54_RS15420	0.81	-0.5
3,406,281	+		LRK54_RS15420	0.81	-0.6
3,406,281	+		LRK54_RS15420	0.81	-0.1
3,406,282	-		LRK54_RS15420	0.82	-3.0
3,406,282	-		LRK54_RS15420	0.82	+1.9
3,406,293	+		LRK54_RS15420	0.83	+0.3
3,406,293	+		LRK54_RS15420	0.83	-0.1
3,406,293	+		LRK54_RS15420	0.83	+0.5
3,406,293	+		LRK54_RS15420	0.83	+0.5
3,406,293	+		LRK54_RS15420	0.83	+1.4
3,406,293	+		LRK54_RS15420	0.83	+0.6
3,406,293	+		LRK54_RS15420	0.83	+0.1
3,406,294	-		LRK54_RS15420	0.83	-1.7
3,406,294	-		LRK54_RS15420	0.83	+1.9
3,406,294	-		LRK54_RS15420	0.83	-1.3
3,406,294	-		LRK54_RS15420	0.83	-0.3
3,406,294	-		LRK54_RS15420	0.83	-0.9
3,406,294	-		LRK54_RS15420	0.83	-0.3
3,406,294	-		LRK54_RS15420	0.83	+0.9
3,406,294	-		LRK54_RS15420	0.83	+0.3
3,406,294	-		LRK54_RS15420	0.83	+1.6
3,406,294	-		LRK54_RS15420	0.83	+1.1
3,406,294	-		LRK54_RS15420	0.83	+1.0
3,406,294	-		LRK54_RS15420	0.83	-0.3
3,406,302	+		LRK54_RS15420	0.85	+3.4
3,406,302	+		LRK54_RS15420	0.85	-1.2
3,406,302	+		LRK54_RS15420	0.85	-1.7
3,406,302	+		LRK54_RS15420	0.85	-0.1
3,406,302	+		LRK54_RS15420	0.85	-1.3
3,406,302	+		LRK54_RS15420	0.85	+0.3
3,406,302	+		LRK54_RS15420	0.85	-0.2
3,406,302	+		LRK54_RS15420	0.85	-1.7
3,406,302	+		LRK54_RS15420	0.85	-2.7
3,406,302	+		LRK54_RS15420	0.85	+0.9
3,406,302	+		LRK54_RS15420	0.85	+1.4
3,406,302	+		LRK54_RS15420	0.85	-0.5
3,406,302	+		LRK54_RS15420	0.85	-0.0
3,406,302	+		LRK54_RS15420	0.85	-0.5
3,406,302	+		LRK54_RS15420	0.85	-0.1
3,406,302	+		LRK54_RS15420	0.85	+0.9
3,406,302	+		LRK54_RS15420	0.85	+1.4
3,406,302	+		LRK54_RS15420	0.85	+0.9
3,406,302	+		LRK54_RS15420	0.85	-0.1
3,406,302	+		LRK54_RS15420	0.85	-2.1
3,406,302	+		LRK54_RS15420	0.85	-1.0
3,406,302	+		LRK54_RS15420	0.85	-0.1
3,406,302	+		LRK54_RS15420	0.85	-0.8
3,406,302	+		LRK54_RS15420	0.85	-1.0
3,406,302	+		LRK54_RS15420	0.85	-2.3
3,406,303	-		LRK54_RS15420	0.85	+0.9
3,406,303	-		LRK54_RS15420	0.85	-1.6
3,406,303	-		LRK54_RS15420	0.85	-0.6
3,406,303	-		LRK54_RS15420	0.85	-0.1
3,406,303	-		LRK54_RS15420	0.85	-1.3
3,406,303	-		LRK54_RS15420	0.85	-0.5
3,406,303	-		LRK54_RS15420	0.85	-0.1
3,406,303	-		LRK54_RS15420	0.85	-0.1
3,406,303	-		LRK54_RS15420	0.85	-0.1
3,406,303	-		LRK54_RS15420	0.85	+0.9
3,406,303	-		LRK54_RS15420	0.85	+1.1
3,406,303	-		LRK54_RS15420	0.85	-1.8
3,406,303	-		LRK54_RS15420	0.85	-0.1
3,406,303	-		LRK54_RS15420	0.85	-1.1
3,406,303	-		LRK54_RS15420	0.85	-1.4
3,406,303	-		LRK54_RS15420	0.85	-0.7
3,406,303	-		LRK54_RS15420	0.85	-1.1
3,406,303	-		LRK54_RS15420	0.85	-1.5
3,406,303	-		LRK54_RS15420	0.85	+0.4
3,406,303	-		LRK54_RS15420	0.85	-1.0
3,406,303	-		LRK54_RS15420	0.85	+1.3
3,406,303	-		LRK54_RS15420	0.85	+1.9
3,406,303	-		LRK54_RS15420	0.85	+1.4
3,406,303	-		LRK54_RS15420	0.85	+1.4
3,406,303	-		LRK54_RS15420	0.85	-0.7
3,406,303	-		LRK54_RS15420	0.85	+0.9
3,406,303	-		LRK54_RS15420	0.85	-1.6
3,406,311	+		LRK54_RS15420	0.86	-0.5
3,406,311	+		LRK54_RS15420	0.86	+2.4
3,406,311	+		LRK54_RS15420	0.86	+1.4
3,406,311	+		LRK54_RS15420	0.86	+0.2
3,406,311	+		LRK54_RS15420	0.86	-0.3
3,406,311	+		LRK54_RS15420	0.86	-1.1
3,406,311	+		LRK54_RS15420	0.86	-2.4
3,406,311	+		LRK54_RS15420	0.86	-1.1
3,406,312	-		LRK54_RS15420	0.86	-0.3
3,406,312	-		LRK54_RS15420	0.86	-0.1
3,406,312	-		LRK54_RS15420	0.86	-1.0
3,406,312	-		LRK54_RS15420	0.86	-2.5
3,406,312	-		LRK54_RS15420	0.86	-1.3
3,406,312	-		LRK54_RS15420	0.86	-0.6
3,406,312	-		LRK54_RS15420	0.86	+2.0
3,406,312	-		LRK54_RS15420	0.86	-1.0
3,406,312	-		LRK54_RS15420	0.86	-0.9
3,406,312	-		LRK54_RS15420	0.86	+0.3
3,406,312	-		LRK54_RS15420	0.86	-1.8
3,406,312	-		LRK54_RS15420	0.86	+0.0
3,406,312	-		LRK54_RS15420	0.86	-1.2
3,406,399	+				-0.2
3,406,399	+				-1.1
3,406,400	-				-0.5
3,406,400	-				+0.5
3,406,400	-				-0.6
3,406,411	+				-2.1
3,406,411	+				-0.1
3,406,411	+				+1.2
3,406,412	-				-2.0
3,406,412	-				-1.3
3,406,470	+				-1.1
3,406,470	+				-1.6
3,406,470	+				-0.5
3,406,470	+				-0.0
3,406,470	+				-1.3
3,406,470	+				-0.7
3,406,470	+				-1.1
3,406,470	+				+0.5
3,406,470	+				-1.6
3,406,470	+				+0.9
3,406,470	+				+0.9
3,406,470	+				-0.0
3,406,470	+				-1.6
3,406,471	-				-0.8
3,406,471	-				+0.9
3,406,471	-				-0.7
3,406,471	-				-0.1
3,406,471	-				+1.2
3,406,471	-				+0.9
3,406,471	-				-1.7
3,406,471	-				-0.5
3,406,471	-				-2.0
3,406,471	-				+0.0
3,406,471	-				-1.6
3,406,471	-				+1.9
3,406,509	+		LRK54_RS15425	0.11	-1.6
3,406,509	+		LRK54_RS15425	0.11	-0.7
3,406,509	+		LRK54_RS15425	0.11	+1.3
3,406,509	+		LRK54_RS15425	0.11	-1.5
3,406,509	+		LRK54_RS15425	0.11	+0.3
3,406,509	+		LRK54_RS15425	0.11	+1.9
3,406,509	+		LRK54_RS15425	0.11	-0.1
3,406,509	+		LRK54_RS15425	0.11	-0.1
3,406,509	+		LRK54_RS15425	0.11	+1.2
3,406,510	-		LRK54_RS15425	0.11	+0.4
3,406,510	-		LRK54_RS15425	0.11	-1.1
3,406,510	-		LRK54_RS15425	0.11	-0.1
3,406,512	+		LRK54_RS15425	0.12	-1.6
3,406,512	+		LRK54_RS15425	0.12	+1.9
3,406,512	+		LRK54_RS15425	0.12	+0.7
3,406,512	+		LRK54_RS15425	0.12	+1.9
3,406,512	+		LRK54_RS15425	0.12	-1.3
3,406,512	+		LRK54_RS15425	0.12	-1.5
3,406,512	+		LRK54_RS15425	0.12	+0.6
3,406,512	+		LRK54_RS15425	0.12	-1.6
3,406,512	+		LRK54_RS15425	0.12	+0.0
3,406,512	+		LRK54_RS15425	0.12	-0.8
3,406,512	+		LRK54_RS15425	0.12	-1.0
3,406,512	+		LRK54_RS15425	0.12	-1.0
3,406,512	+		LRK54_RS15425	0.12	+0.5
3,406,512	+		LRK54_RS15425	0.12	+0.3
3,406,512	+		LRK54_RS15425	0.12	+0.3
3,406,512	+		LRK54_RS15425	0.12	-0.7
3,406,512	+		LRK54_RS15425	0.12	-0.1
3,406,512	+		LRK54_RS15425	0.12	-0.7
3,406,512	+		LRK54_RS15425	0.12	-1.4
3,406,512	+		LRK54_RS15425	0.12	-1.0
3,406,512	+		LRK54_RS15425	0.12	+0.6
3,406,512	+		LRK54_RS15425	0.12	+1.0
3,406,512	+		LRK54_RS15425	0.12	+0.1
3,406,513	-		LRK54_RS15425	0.12	-1.3
3,406,513	-		LRK54_RS15425	0.12	+1.9
3,406,513	-		LRK54_RS15425	0.12	-1.1
3,406,513	-		LRK54_RS15425	0.12	+0.4
3,406,513	-		LRK54_RS15425	0.12	-1.7
3,406,513	-		LRK54_RS15425	0.12	+0.1
3,406,513	-		LRK54_RS15425	0.12	-0.7
3,406,513	-		LRK54_RS15425	0.12	-0.1
3,406,513	-		LRK54_RS15425	0.12	+0.9
3,406,513	-		LRK54_RS15425	0.12	+0.4
3,406,513	-		LRK54_RS15425	0.12	-0.5
3,406,513	-		LRK54_RS15425	0.12	-0.7
3,406,513	-		LRK54_RS15425	0.12	+0.0
3,406,513	-		LRK54_RS15425	0.12	+0.6
3,406,513	-		LRK54_RS15425	0.12	+0.7
3,406,513	-		LRK54_RS15425	0.12	+0.0
3,406,513	-		LRK54_RS15425	0.12	+0.9
3,406,513	-		LRK54_RS15425	0.12	+0.3
3,406,513	-		LRK54_RS15425	0.12	-0.5
3,406,513	-		LRK54_RS15425	0.12	-1.0
3,406,513	-		LRK54_RS15425	0.12	-2.5
3,406,688	+		LRK54_RS15425	0.61	-0.5
3,406,718	+		LRK54_RS15425	0.69	+0.2
3,406,718	+		LRK54_RS15425	0.69	+1.9
3,406,718	+		LRK54_RS15425	0.69	-1.8
3,406,718	+		LRK54_RS15425	0.69	-0.1
3,406,718	+		LRK54_RS15425	0.69	-1.4
3,406,718	+		LRK54_RS15425	0.69	-0.3
3,406,718	+		LRK54_RS15425	0.69	-2.1
3,406,718	+		LRK54_RS15425	0.69	-0.3
3,406,718	+		LRK54_RS15425	0.69	+1.9
3,406,719	-		LRK54_RS15425	0.69	-0.7
3,406,719	-		LRK54_RS15425	0.69	-1.3
3,406,719	-		LRK54_RS15425	0.69	+0.2
3,406,719	-		LRK54_RS15425	0.69	-1.3
3,406,789	+		LRK54_RS15425	0.89	+0.9
3,406,789	+		LRK54_RS15425	0.89	-1.5
3,406,789	+		LRK54_RS15425	0.89	+0.3
3,406,789	+		LRK54_RS15425	0.89	+1.0
3,406,789	+		LRK54_RS15425	0.89	+1.9
3,406,789	+		LRK54_RS15425	0.89	+1.1
3,406,789	+		LRK54_RS15425	0.89	-2.2
3,406,789	+		LRK54_RS15425	0.89	-2.1
3,406,789	+		LRK54_RS15425	0.89	-0.5
3,406,790	-		LRK54_RS15425	0.89	-1.0
3,406,790	-		LRK54_RS15425	0.89	+2.9
3,406,790	-		LRK54_RS15425	0.89	+2.3
3,406,790	-		LRK54_RS15425	0.89	+0.9
3,406,790	-		LRK54_RS15425	0.89	+0.3
3,406,790	-		LRK54_RS15425	0.89	+0.5
3,406,790	-		LRK54_RS15425	0.89	+0.2
3,406,790	-		LRK54_RS15425	0.89	-0.8
3,406,790	-		LRK54_RS15425	0.89	+2.9
3,406,790	-		LRK54_RS15425	0.89	-2.8
3,406,790	-		LRK54_RS15425	0.89	-0.2
3,406,790	-		LRK54_RS15425	0.89	+1.7
3,406,790	-		LRK54_RS15425	0.89	+0.2
3,406,790	-		LRK54_RS15425	0.89	+0.2
3,406,790	-		LRK54_RS15425	0.89	+0.0
3,406,790	-		LRK54_RS15425	0.89	-2.1
3,406,790	-		LRK54_RS15425	0.89	-1.1
3,406,800	+				+3.1
3,406,800	+				-0.5
3,406,800	+				-1.5
3,406,800	+				+2.4
3,406,800	+				-1.1
3,406,800	+				-1.1
3,406,800	+				+0.9
3,406,800	+				-1.0
3,406,800	+				+0.6
3,406,800	+				+0.3
3,406,800	+				-0.5
3,406,800	+				+1.5
3,406,800	+				+0.5
3,406,800	+				-0.1
3,406,801	-				-0.7
3,406,801	-				+0.5
3,406,801	-				-2.3
3,406,801	-				-0.5
3,406,801	-				-1.0
3,406,801	-				-0.9
3,406,801	-				+0.9
3,406,801	-				+0.3
3,406,801	-				-0.5
3,406,801	-				+0.3
3,406,801	-				-1.4
3,406,801	-				-2.3
3,406,801	-				+0.3
3,406,801	-				-0.3
3,406,810	+				-0.1
3,406,810	+				-0.5
3,406,810	+				-1.2
3,406,810	+				-0.1
3,406,810	+				+0.9
3,406,810	+				-0.5
3,406,810	+				-1.5
3,406,810	+				+0.9
3,406,810	+				+0.5
3,406,810	+				+0.5
3,406,810	+				-1.5
3,406,810	+				+0.2
3,406,810	+				-0.2
3,406,810	+				+0.2
3,406,810	+				-1.3
3,406,810	+				-0.5
3,406,810	+				-0.5
3,406,811	-				+0.3
3,406,811	-				-1.1
3,406,811	-				-2.7
3,406,811	-				-0.4
3,406,811	-				-1.0
3,406,811	-				-2.2
3,406,811	-				+0.5
3,406,811	-				-2.1
3,407,005	+				-1.0
3,407,006	-				+0.3
3,407,006	-				-0.1
3,407,080	-		LRK54_RS15430	0.12	-0.5
3,407,158	+		LRK54_RS15430	0.27	-1.6
3,407,158	+		LRK54_RS15430	0.27	-1.1
3,407,205	+		LRK54_RS15430	0.36	+0.9
3,407,205	+		LRK54_RS15430	0.36	-0.3
3,407,206	-		LRK54_RS15430	0.37	-1.0
3,407,238	+		LRK54_RS15430	0.43	+3.4
3,407,239	-		LRK54_RS15430	0.43	+0.8
3,407,313	+		LRK54_RS15430	0.57	+0.9
3,407,313	+		LRK54_RS15430	0.57	-0.5
3,407,313	+		LRK54_RS15430	0.57	-0.5
3,407,313	+		LRK54_RS15430	0.57	-1.1
3,407,313	+		LRK54_RS15430	0.57	-0.1
3,407,313	+		LRK54_RS15430	0.57	+0.9
3,407,314	-		LRK54_RS15430	0.57	+0.2
3,407,314	-		LRK54_RS15430	0.57	+0.5
3,407,314	-		LRK54_RS15430	0.57	+0.3
3,407,361	+		LRK54_RS15430	0.66	+2.7
3,407,361	+		LRK54_RS15430	0.66	-1.3
3,407,362	-		LRK54_RS15430	0.66	+0.3
3,407,362	-		LRK54_RS15430	0.66	+0.7
3,407,521	+				+0.3
3,407,521	+				-1.1
3,407,521	+				-0.3
3,407,521	+				+1.9
3,407,521	+				-0.7
3,407,521	+				-0.7
3,407,521	+				-0.6
3,407,521	+				-0.7
3,407,521	+				+0.0
3,407,521	+				-0.5
3,407,521	+				+0.5
3,407,521	+				-1.5
3,407,521	+				-0.3
3,407,521	+				-0.5
3,407,521	+				+0.9
3,407,521	+				-1.1
3,407,521	+				-2.5
3,407,521	+				+0.3
3,407,521	+				-1.4
3,407,521	+				+1.1
3,407,521	+				+0.3
3,407,521	+				+1.5
3,407,521	+				+0.0
3,407,521	+				+0.3
3,407,521	+				-0.3
3,407,521	+				-1.3
3,407,522	-				-0.7
3,407,522	-				-0.7
3,407,522	-				+0.9
3,407,522	-				-0.1
3,407,522	-				+0.6
3,407,522	-				-0.1
3,407,522	-				-1.8
3,407,522	-				-0.9
3,407,522	-				-0.9
3,407,522	-				+0.3
3,407,522	-				+0.5
3,407,522	-				+0.3
3,407,522	-				-0.4
3,407,522	-				+1.4
3,407,522	-				-0.3
3,407,522	-				-0.1
3,407,522	-				+1.9
3,407,522	-				-0.5
3,407,522	-				+0.6
3,407,522	-				+0.7
3,407,522	-				+1.7
3,407,522	-				-1.0
3,407,522	-				-1.3
3,407,522	-				+1.2
3,407,522	-				-0.6
3,407,522	-				+0.0
3,407,522	-				+0.2
3,407,522	-				+1.3
3,407,522	-				+0.1
3,407,522	-				+1.9
3,407,526	+				-1.1
3,407,526	+				+1.9
3,407,526	+				-1.7
3,407,590	+				-0.8
3,407,590	+				-0.2
3,407,590	+				+1.6
3,407,590	+				+0.9
3,407,590	+				+0.9
3,407,590	+				-2.1
3,407,590	+				-1.3
3,407,590	+				+1.3
3,407,590	+				-1.0
3,407,590	+				+1.9
3,407,590	+				+0.7
3,407,591	-				-2.5
3,407,591	-				-0.0
3,407,591	-				+0.5
3,407,591	-				+0.9
3,407,591	-				-0.5
3,407,591	-				+0.0
3,407,591	-				+0.6
3,407,591	-				-0.1
3,407,591	-				+1.9
3,407,591	-				-1.0
3,407,591	-				+0.3
3,407,591	-				-0.5
3,407,591	-				+0.3
3,407,591	-				-1.0
3,407,591	-				+0.5
3,407,591	-				-0.7
3,407,591	-				-0.4
3,407,621	-				+1.2
3,407,631	+				+1.1
3,407,634	+				+1.9
3,407,635	-				+0.6