Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10025

Experiment: Anaerobic, acetate donor; nitrate and iron electron acceptors

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, acetate donor; nitrate and iron electron acceptors
2,202,246	+		LRK54_RS10020	0.74	+1.6
2,202,246	+		LRK54_RS10020	0.74	+1.8
2,202,246	+		LRK54_RS10020	0.74	+0.9
2,202,246	+		LRK54_RS10020	0.74	+0.6
2,202,247	-		LRK54_RS10020	0.74	-0.8
2,202,247	-		LRK54_RS10020	0.74	-0.6
2,202,247	-		LRK54_RS10020	0.74	-1.9
2,202,247	-		LRK54_RS10020	0.74	-0.2
2,202,247	-		LRK54_RS10020	0.74	-0.2
2,202,247	-		LRK54_RS10020	0.74	-0.8
2,202,247	-		LRK54_RS10020	0.74	-0.7
2,202,247	-		LRK54_RS10020	0.74	+0.0
2,202,247	-		LRK54_RS10020	0.74	+1.3
2,202,247	-		LRK54_RS10020	0.74	+0.4
2,202,373	-		LRK54_RS10020	0.79	-1.2
2,202,693	+				-1.4
2,202,693	+				-1.4
2,202,693	+				-1.2
2,202,693	+				+0.2
2,202,693	+				-0.4
2,202,693	+				-0.9
2,202,693	+				-0.1
2,202,693	+				-0.2
2,202,694	-				-0.5
2,202,694	-				+1.8
2,202,694	-				+2.2
2,202,694	-				-1.3
2,202,694	-				-0.8
2,202,694	-				-1.2
2,203,153	+				-0.5
2,203,153	+				-0.6
2,203,153	+				-1.4
2,203,153	+				-1.6
2,203,153	+				-1.4
2,203,153	+				+1.3
2,203,153	+				+1.8
2,203,153	+				-0.8
2,203,153	+				+0.2
2,203,153	+				-2.1
2,203,153	+				-1.0
2,203,153	+				+0.2
2,203,153	+				-0.1
2,203,154	-				+2.0
2,203,154	-				+1.8
2,203,154	-				-0.2
2,203,154	-				+1.1
2,203,154	-				+0.7
2,203,154	-				+0.6
2,203,154	-				-1.2
2,203,154	-				+0.2
2,203,154	-				-1.1
2,203,154	-				-1.2
2,203,154	-				-0.9
2,203,154	-				-1.2
2,203,154	-				-0.6
2,203,219	+				-0.2
2,203,219	+				+1.8
2,203,219	+				-0.6
2,203,219	+				-1.2
2,203,219	+				-0.6
2,203,219	+				-0.5
2,203,219	+				+0.2
2,203,219	+				-2.2
2,203,220	-				-1.8
2,203,220	-				+1.8
2,203,220	-				+0.4
2,203,220	-				-0.2
2,203,220	-				+0.8
2,203,220	-				+0.0
2,203,220	-				-0.2
2,203,220	-				-0.1
2,203,220	-				-1.5
2,203,220	-				-1.6
2,203,220	-				+1.2
2,203,220	-				-1.2
2,203,372	+		LRK54_RS10025	0.19	-0.1
2,203,372	+		LRK54_RS10025	0.19	-1.0
2,203,372	+		LRK54_RS10025	0.19	-0.5
2,203,372	+		LRK54_RS10025	0.19	+0.2
2,203,372	+		LRK54_RS10025	0.19	-0.5
2,203,373	-		LRK54_RS10025	0.19	+1.2
2,203,373	-		LRK54_RS10025	0.19	+1.8
2,203,373	-		LRK54_RS10025	0.19	-0.1
2,203,462	+		LRK54_RS10025	0.27	-0.8
2,203,462	+		LRK54_RS10025	0.27	+4.6
2,203,462	+		LRK54_RS10025	0.27	+0.5
2,203,462	+		LRK54_RS10025	0.27	+1.0
2,203,462	+		LRK54_RS10025	0.27	+0.2
2,203,463	-		LRK54_RS10025	0.27	-0.5
2,203,463	-		LRK54_RS10025	0.27	-1.7
2,203,463	-		LRK54_RS10025	0.27	-0.2
2,203,463	-		LRK54_RS10025	0.27	+0.2
2,203,468	+		LRK54_RS10025	0.28	-0.8
2,203,468	+		LRK54_RS10025	0.28	-2.2
2,203,468	+		LRK54_RS10025	0.28	-2.3
2,203,468	+		LRK54_RS10025	0.28	+0.0
2,203,468	+		LRK54_RS10025	0.28	-0.1
2,203,468	+		LRK54_RS10025	0.28	-0.5
2,203,468	+		LRK54_RS10025	0.28	+0.3
2,203,468	+		LRK54_RS10025	0.28	+0.2
2,203,468	+		LRK54_RS10025	0.28	-0.1
2,203,468	+		LRK54_RS10025	0.28	-4.0
2,203,468	+		LRK54_RS10025	0.28	+0.2
2,203,468	+		LRK54_RS10025	0.28	+0.4
2,203,468	+		LRK54_RS10025	0.28	+0.3
2,203,468	+		LRK54_RS10025	0.28	-0.5
2,203,468	+		LRK54_RS10025	0.28	-0.2
2,203,468	+		LRK54_RS10025	0.28	-0.2
2,203,468	+		LRK54_RS10025	0.28	+0.8
2,203,469	-		LRK54_RS10025	0.28	+0.4
2,203,469	-		LRK54_RS10025	0.28	-0.5
2,203,469	-		LRK54_RS10025	0.28	-0.8
2,203,469	-		LRK54_RS10025	0.28	-1.1
2,203,469	-		LRK54_RS10025	0.28	+0.1
2,203,469	-		LRK54_RS10025	0.28	+3.1
2,203,469	-		LRK54_RS10025	0.28	+2.8
2,203,469	-		LRK54_RS10025	0.28	-1.4
2,203,469	-		LRK54_RS10025	0.28	+0.9
2,203,469	-		LRK54_RS10025	0.28	+0.2
2,203,469	-		LRK54_RS10025	0.28	-1.1
2,203,469	-		LRK54_RS10025	0.28	-0.6
2,203,469	-		LRK54_RS10025	0.28	-0.2
2,203,469	-		LRK54_RS10025	0.28	-2.2
2,203,469	-		LRK54_RS10025	0.28	+0.2
2,203,469	-		LRK54_RS10025	0.28	+0.2
2,203,516	+		LRK54_RS10025	0.32	-0.2
2,203,516	+		LRK54_RS10025	0.32	+0.7
2,203,516	+		LRK54_RS10025	0.32	-1.4
2,203,516	+		LRK54_RS10025	0.32	-0.2
2,203,516	+		LRK54_RS10025	0.32	-1.0
2,203,516	+		LRK54_RS10025	0.32	-0.7
2,203,516	+		LRK54_RS10025	0.32	-0.8
2,203,516	+		LRK54_RS10025	0.32	-2.3
2,203,516	+		LRK54_RS10025	0.32	-0.8
2,203,517	-		LRK54_RS10025	0.32	-0.3
2,203,517	-		LRK54_RS10025	0.32	-1.7
2,203,517	-		LRK54_RS10025	0.32	+1.8
2,203,517	-		LRK54_RS10025	0.32	-0.2
2,203,517	-		LRK54_RS10025	0.32	-0.2
2,203,517	-		LRK54_RS10025	0.32	-0.2
2,203,517	-		LRK54_RS10025	0.32	-0.8
2,203,517	-		LRK54_RS10025	0.32	+0.5
2,203,517	-		LRK54_RS10025	0.32	+0.6
2,203,517	-		LRK54_RS10025	0.32	-0.6
2,203,517	-		LRK54_RS10025	0.32	-0.9
2,203,517	-		LRK54_RS10025	0.32	+0.1
2,203,517	-		LRK54_RS10025	0.32	+2.0
2,203,517	-		LRK54_RS10025	0.32	-0.9
2,203,517	-		LRK54_RS10025	0.32	-2.3
2,203,517	-		LRK54_RS10025	0.32	-0.5
2,203,609	+		LRK54_RS10025	0.40	+1.8
2,203,609	+		LRK54_RS10025	0.40	+0.7
2,203,609	+		LRK54_RS10025	0.40	-0.3
2,203,609	+		LRK54_RS10025	0.40	-1.4
2,203,609	+		LRK54_RS10025	0.40	-1.5
2,203,609	+		LRK54_RS10025	0.40	+0.4
2,203,609	+		LRK54_RS10025	0.40	+0.2
2,203,609	+		LRK54_RS10025	0.40	-0.6
2,203,609	+		LRK54_RS10025	0.40	+0.8
2,203,609	+		LRK54_RS10025	0.40	+1.9
2,203,609	+		LRK54_RS10025	0.40	+0.2
2,203,609	+		LRK54_RS10025	0.40	-0.8
2,203,609	+		LRK54_RS10025	0.40	-0.8
2,203,609	+		LRK54_RS10025	0.40	+0.2
2,203,609	+		LRK54_RS10025	0.40	-1.2
2,203,609	+		LRK54_RS10025	0.40	+0.4
2,203,610	-		LRK54_RS10025	0.40	-0.6
2,203,610	-		LRK54_RS10025	0.40	-1.8
2,203,610	-		LRK54_RS10025	0.40	-1.8
2,203,610	-		LRK54_RS10025	0.40	-1.8
2,203,610	-		LRK54_RS10025	0.40	-0.7
2,203,610	-		LRK54_RS10025	0.40	-1.1
2,203,610	-		LRK54_RS10025	0.40	+0.7
2,203,610	-		LRK54_RS10025	0.40	-1.8
2,203,610	-		LRK54_RS10025	0.40	+0.8
2,203,610	-		LRK54_RS10025	0.40	-0.6
2,203,610	-		LRK54_RS10025	0.40	-1.8
2,203,610	-		LRK54_RS10025	0.40	+1.8
2,203,610	-		LRK54_RS10025	0.40	-0.0
2,203,610	-		LRK54_RS10025	0.40	-0.9
2,203,610	-		LRK54_RS10025	0.40	-0.8
2,203,610	-		LRK54_RS10025	0.40	-1.1
2,203,610	-		LRK54_RS10025	0.40	-1.1
2,203,610	-		LRK54_RS10025	0.40	-1.6
2,203,610	-		LRK54_RS10025	0.40	-1.4
2,203,610	-		LRK54_RS10025	0.40	+1.0
2,203,619	-		LRK54_RS10025	0.41	-2.1
2,203,726	+		LRK54_RS10025	0.50	+0.8
2,203,726	+		LRK54_RS10025	0.50	-1.8
2,203,726	+		LRK54_RS10025	0.50	-0.7
2,203,726	+		LRK54_RS10025	0.50	+0.2
2,203,726	+		LRK54_RS10025	0.50	-0.9
2,203,727	-		LRK54_RS10025	0.51	-1.2
2,203,727	-		LRK54_RS10025	0.51	-1.1
2,203,727	-		LRK54_RS10025	0.51	-1.8
2,203,727	-		LRK54_RS10025	0.51	+0.8
2,203,727	-		LRK54_RS10025	0.51	-0.7
2,203,727	-		LRK54_RS10025	0.51	+0.7
2,203,825	+		LRK54_RS10025	0.59	-0.6
2,203,825	+		LRK54_RS10025	0.59	+1.8
2,203,825	+		LRK54_RS10025	0.59	-1.3
2,203,825	+		LRK54_RS10025	0.59	+1.3
2,203,826	-		LRK54_RS10025	0.59	-0.0
2,203,826	-		LRK54_RS10025	0.59	-2.2
2,203,826	-		LRK54_RS10025	0.59	-1.0
2,203,826	-		LRK54_RS10025	0.59	-0.7
2,203,826	-		LRK54_RS10025	0.59	-1.1
2,203,826	-		LRK54_RS10025	0.59	-2.6
2,203,826	-		LRK54_RS10025	0.59	+0.2
2,203,826	-		LRK54_RS10025	0.59	+0.9
2,203,826	-		LRK54_RS10025	0.59	-0.6
2,203,891	+		LRK54_RS10025	0.65	-1.1
2,203,891	+		LRK54_RS10025	0.65	-0.8
2,203,891	+		LRK54_RS10025	0.65	+0.2
2,203,892	-		LRK54_RS10025	0.65	+0.8
2,203,973	-		LRK54_RS10025	0.72	-2.2
2,203,973	-		LRK54_RS10025	0.72	-1.6
2,203,985	-		LRK54_RS10025	0.73	-1.7
2,203,985	-		LRK54_RS10025	0.73	+0.4
2,203,985	-		LRK54_RS10025	0.73	+0.2
2,203,985	-		LRK54_RS10025	0.73	-1.1
2,203,985	-		LRK54_RS10025	0.73	+1.2
2,203,985	-		LRK54_RS10025	0.73	-0.8
2,203,985	-		LRK54_RS10025	0.73	+0.8
2,203,985	-		LRK54_RS10025	0.73	-0.0
2,203,985	-		LRK54_RS10025	0.73	-0.2
2,203,985	-		LRK54_RS10025	0.73	-0.9
2,203,985	-		LRK54_RS10025	0.73	-0.7
2,203,985	-		LRK54_RS10025	0.73	-0.9
2,203,985	-		LRK54_RS10025	0.73	+0.8
2,203,985	-		LRK54_RS10025	0.73	+1.6
2,203,985	-		LRK54_RS10025	0.73	-0.6
2,203,985	-		LRK54_RS10025	0.73	-1.1
2,204,035	+		LRK54_RS10025	0.78	+0.2
2,204,035	+		LRK54_RS10025	0.78	-0.5
2,204,035	+		LRK54_RS10025	0.78	+0.8
2,204,036	-		LRK54_RS10025	0.78	-0.5
2,204,036	-		LRK54_RS10025	0.78	+1.8
2,204,036	-		LRK54_RS10025	0.78	+0.8
2,204,036	-		LRK54_RS10025	0.78	-0.2
2,204,036	-		LRK54_RS10025	0.78	+0.2
2,204,036	-		LRK54_RS10025	0.78	+2.2
2,204,098	+		LRK54_RS10025	0.83	+0.8
2,204,099	-		LRK54_RS10025	0.83	-0.7
2,204,099	-		LRK54_RS10025	0.83	-0.2
2,204,099	-		LRK54_RS10025	0.83	-2.8
2,204,099	-		LRK54_RS10025	0.83	-1.2
2,204,099	-		LRK54_RS10025	0.83	-0.4
2,204,149	+		LRK54_RS10025	0.88	-0.8
2,204,174	-		LRK54_RS10025	0.90	-1.4
2,204,278	-				-1.2
2,204,288	+				-0.2
2,204,288	+				+1.8
2,204,288	+				-1.1
2,204,288	+				-2.3
2,204,288	+				+2.1
2,204,288	+				-0.6
2,204,288	+				-0.3
2,204,289	-				+1.3
2,204,289	-				-0.6
2,204,289	-				+0.2
2,204,289	-				-1.7
2,204,289	-				-2.3
2,204,289	-				-1.8
2,204,289	-				-0.4
2,204,289	-				-0.5
2,204,289	-				+0.5
2,204,353	-				+0.2
2,204,353	-				-1.8
2,204,409	+				+1.8
2,204,409	+				+1.5
2,204,409	+				+1.0
2,204,409	+				-1.9
2,204,410	-				+0.7
2,204,468	-				+0.8
2,204,534	+				+0.2
2,204,534	+				-0.7
2,204,534	+				-1.2
2,204,534	+				+0.1
2,204,534	+				-0.2
2,204,535	-				+0.4
2,204,535	-				-1.7
2,204,535	-				-0.5
2,204,535	-				-2.1
2,204,535	-				+0.8
2,204,535	-				-1.9
2,204,535	-				-1.1
2,204,535	-				+4.1
2,204,561	-				-1.3
2,204,575	+				+1.6
2,204,588	-				-1.3
2,204,650	-				-1.0
2,204,650	-				+0.2
2,204,650	-				-1.8
2,204,686	-				-2.8
2,204,721	-				-2.1
2,204,858	+				-0.5
2,204,858	+				+0.9
2,204,858	+				-2.1
2,204,858	+				-0.4
2,204,859	-				+0.3
2,204,859	-				-0.6
2,204,954	+		LRK54_RS10030	0.12	-1.3
2,204,954	+		LRK54_RS10030	0.12	-1.7
2,204,976	+		LRK54_RS10030	0.14	-0.2
2,204,977	-		LRK54_RS10030	0.14	-0.9
2,205,140	+		LRK54_RS10030	0.26	+0.2
2,205,140	+		LRK54_RS10030	0.26	+0.6
2,205,141	-		LRK54_RS10030	0.26	+0.2
2,205,141	-		LRK54_RS10030	0.26	+0.8
2,205,173	+		LRK54_RS10030	0.28	+0.2
2,205,174	-		LRK54_RS10030	0.28	-2.4
2,205,218	+		LRK54_RS10030	0.32	-0.7
2,205,218	+		LRK54_RS10030	0.32	-0.7
2,205,218	+		LRK54_RS10030	0.32	+0.3
2,205,218	+		LRK54_RS10030	0.32	+0.3
2,205,218	+		LRK54_RS10030	0.32	+0.3
2,205,218	+		LRK54_RS10030	0.32	+0.5
2,205,218	+		LRK54_RS10030	0.32	+1.8
2,205,218	+		LRK54_RS10030	0.32	-1.5
2,205,218	+		LRK54_RS10030	0.32	+0.8
2,205,218	+		LRK54_RS10030	0.32	+0.2
2,205,218	+		LRK54_RS10030	0.32	+0.7
2,205,219	-		LRK54_RS10030	0.32	-0.9
2,205,219	-		LRK54_RS10030	0.32	-1.8
2,205,219	-		LRK54_RS10030	0.32	-0.2
2,205,219	-		LRK54_RS10030	0.32	+1.8
2,205,219	-		LRK54_RS10030	0.32	-1.7
2,205,219	-		LRK54_RS10030	0.32	-2.0
2,205,219	-		LRK54_RS10030	0.32	-0.4
2,205,219	-		LRK54_RS10030	0.32	+0.9
2,205,219	-		LRK54_RS10030	0.32	-0.6
2,205,219	-		LRK54_RS10030	0.32	-0.7
2,205,219	-		LRK54_RS10030	0.32	-1.6
2,205,219	-		LRK54_RS10030	0.32	+1.8
2,205,219	-		LRK54_RS10030	0.32	-2.6