Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05710

Experiment: Anaerobic, acetate donor; nitrate and iron electron acceptors

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, acetate donor; nitrate and iron electron acceptors
1,234,917	+				+1.1
1,235,226	+		LRK54_RS05710	0.21	-0.5
1,235,226	+		LRK54_RS05710	0.21	-1.2
1,235,226	+		LRK54_RS05710	0.21	-0.3
1,235,226	+		LRK54_RS05710	0.21	+0.8
1,235,226	+		LRK54_RS05710	0.21	+2.8
1,235,226	+		LRK54_RS05710	0.21	-1.3
1,235,226	+		LRK54_RS05710	0.21	-0.8
1,235,227	-		LRK54_RS05710	0.21	-0.2
1,235,227	-		LRK54_RS05710	0.21	+1.8
1,235,227	-		LRK54_RS05710	0.21	+0.5
1,235,227	-		LRK54_RS05710	0.21	-0.8
1,235,227	-		LRK54_RS05710	0.21	+0.8
1,235,227	-		LRK54_RS05710	0.21	-0.9
1,235,227	-		LRK54_RS05710	0.21	+1.8
1,235,244	+		LRK54_RS05710	0.22	-1.0
1,235,244	+		LRK54_RS05710	0.22	+0.5
1,235,244	+		LRK54_RS05710	0.22	-0.5
1,235,244	+		LRK54_RS05710	0.22	-1.4
1,235,244	+		LRK54_RS05710	0.22	-0.2
1,235,244	+		LRK54_RS05710	0.22	+0.8
1,235,244	+		LRK54_RS05710	0.22	+0.2
1,235,245	-		LRK54_RS05710	0.22	+1.8
1,235,245	-		LRK54_RS05710	0.22	+1.2
1,235,245	-		LRK54_RS05710	0.22	-0.7
1,235,245	-		LRK54_RS05710	0.22	-0.5
1,235,245	-		LRK54_RS05710	0.22	+0.4
1,235,245	-		LRK54_RS05710	0.22	-0.7
1,235,245	-		LRK54_RS05710	0.22	-0.5
1,235,245	-		LRK54_RS05710	0.22	+0.5
1,235,245	-		LRK54_RS05710	0.22	+0.8
1,235,245	-		LRK54_RS05710	0.22	-0.6
1,235,245	-		LRK54_RS05710	0.22	-0.1
1,235,245	-		LRK54_RS05710	0.22	-1.9
1,235,370	+		LRK54_RS05710	0.31	+0.2
1,235,370	+		LRK54_RS05710	0.31	-0.2
1,235,370	+		LRK54_RS05710	0.31	+0.8
1,235,370	+		LRK54_RS05710	0.31	+0.6
1,235,370	+		LRK54_RS05710	0.31	+0.8
1,235,371	-		LRK54_RS05710	0.31	+0.8
1,235,379	+		LRK54_RS05710	0.32	+0.2
1,235,379	+		LRK54_RS05710	0.32	+2.8
1,235,379	+		LRK54_RS05710	0.32	+1.8
1,235,379	+		LRK54_RS05710	0.32	+0.4
1,235,379	+		LRK54_RS05710	0.32	-0.0
1,235,379	+		LRK54_RS05710	0.32	+1.4
1,235,379	+		LRK54_RS05710	0.32	+0.8
1,235,379	+		LRK54_RS05710	0.32	-0.2
1,235,380	-		LRK54_RS05710	0.32	+0.9
1,235,380	-		LRK54_RS05710	0.32	+0.8
1,235,380	-		LRK54_RS05710	0.32	+1.2
1,235,380	-		LRK54_RS05710	0.32	-0.8
1,235,380	-		LRK54_RS05710	0.32	-0.5
1,235,380	-		LRK54_RS05710	0.32	+0.2
1,235,380	-		LRK54_RS05710	0.32	-0.0
1,235,394	+		LRK54_RS05710	0.33	-0.3
1,235,394	+		LRK54_RS05710	0.33	+2.8
1,235,394	+		LRK54_RS05710	0.33	+1.8
1,235,394	+		LRK54_RS05710	0.33	+0.2
1,235,394	+		LRK54_RS05710	0.33	+1.0
1,235,394	+		LRK54_RS05710	0.33	+0.8
1,235,394	+		LRK54_RS05710	0.33	+1.4
1,235,394	+		LRK54_RS05710	0.33	+1.0
1,235,394	+		LRK54_RS05710	0.33	-0.1
1,235,394	+		LRK54_RS05710	0.33	-0.5
1,235,394	+		LRK54_RS05710	0.33	+2.4
1,235,394	+		LRK54_RS05710	0.33	+2.4
1,235,394	+		LRK54_RS05710	0.33	+0.2
1,235,394	+		LRK54_RS05710	0.33	+1.4
1,235,394	+		LRK54_RS05710	0.33	-1.0
1,235,394	+		LRK54_RS05710	0.33	+1.8
1,235,394	+		LRK54_RS05710	0.33	-1.2
1,235,394	+		LRK54_RS05710	0.33	-0.8
1,235,394	+		LRK54_RS05710	0.33	+2.4
1,235,394	+		LRK54_RS05710	0.33	-0.5
1,235,395	-		LRK54_RS05710	0.33	+1.8
1,235,395	-		LRK54_RS05710	0.33	+0.8
1,235,395	-		LRK54_RS05710	0.33	+1.0
1,235,395	-		LRK54_RS05710	0.33	+0.2
1,235,395	-		LRK54_RS05710	0.33	+0.2
1,235,395	-		LRK54_RS05710	0.33	-2.0
1,235,395	-		LRK54_RS05710	0.33	+1.8
1,235,395	-		LRK54_RS05710	0.33	+2.6
1,235,395	-		LRK54_RS05710	0.33	-0.1
1,235,395	-		LRK54_RS05710	0.33	+0.9
1,235,395	-		LRK54_RS05710	0.33	-0.2
1,235,395	-		LRK54_RS05710	0.33	-0.5
1,235,395	-		LRK54_RS05710	0.33	-0.8
1,235,395	-		LRK54_RS05710	0.33	+1.6
1,235,395	-		LRK54_RS05710	0.33	-0.6
1,235,395	-		LRK54_RS05710	0.33	-1.0
1,235,395	-		LRK54_RS05710	0.33	-0.5
1,235,395	-		LRK54_RS05710	0.33	+2.8
1,235,457	+		LRK54_RS05710	0.37	-0.2
1,235,457	+		LRK54_RS05710	0.37	-0.4
1,235,457	+		LRK54_RS05710	0.37	+0.5
1,235,458	-		LRK54_RS05710	0.38	+0.8
1,235,458	-		LRK54_RS05710	0.38	+0.2
1,235,565	+		LRK54_RS05710	0.45	-0.5
1,235,565	+		LRK54_RS05710	0.45	-0.2
1,235,565	+		LRK54_RS05710	0.45	+1.2
1,235,565	+		LRK54_RS05710	0.45	-0.2
1,235,565	+		LRK54_RS05710	0.45	-1.0
1,235,565	+		LRK54_RS05710	0.45	+0.8
1,235,565	+		LRK54_RS05710	0.45	+1.8
1,235,565	+		LRK54_RS05710	0.45	+0.8
1,235,565	+		LRK54_RS05710	0.45	+1.8
1,235,566	-		LRK54_RS05710	0.45	-0.2
1,235,566	-		LRK54_RS05710	0.45	+0.0
1,235,566	-		LRK54_RS05710	0.45	-1.4
1,235,566	-		LRK54_RS05710	0.45	+0.8
1,235,566	-		LRK54_RS05710	0.45	+0.4
1,235,566	-		LRK54_RS05710	0.45	-0.8
1,235,673	+		LRK54_RS05710	0.53	+1.5
1,235,673	+		LRK54_RS05710	0.53	-0.5
1,235,673	+		LRK54_RS05710	0.53	+1.8
1,235,673	+		LRK54_RS05710	0.53	+1.2
1,235,673	+		LRK54_RS05710	0.53	+1.8
1,235,673	+		LRK54_RS05710	0.53	+2.8
1,235,673	+		LRK54_RS05710	0.53	-0.8
1,235,673	+		LRK54_RS05710	0.53	-1.0
1,235,673	+		LRK54_RS05710	0.53	+1.8
1,235,673	+		LRK54_RS05710	0.53	-1.4
1,235,673	+		LRK54_RS05710	0.53	-0.8
1,235,673	+		LRK54_RS05710	0.53	-0.2
1,235,673	+		LRK54_RS05710	0.53	+0.2
1,235,673	+		LRK54_RS05710	0.53	-0.2
1,235,673	+		LRK54_RS05710	0.53	+0.5
1,235,673	+		LRK54_RS05710	0.53	+0.5
1,235,674	-		LRK54_RS05710	0.53	+0.8
1,235,674	-		LRK54_RS05710	0.53	+1.2
1,235,674	-		LRK54_RS05710	0.53	+0.5
1,235,674	-		LRK54_RS05710	0.53	+1.5
1,235,674	-		LRK54_RS05710	0.53	+1.2
1,235,674	-		LRK54_RS05710	0.53	+0.8
1,235,674	-		LRK54_RS05710	0.53	+1.5
1,235,674	-		LRK54_RS05710	0.53	+1.0
1,235,674	-		LRK54_RS05710	0.53	-0.5
1,235,674	-		LRK54_RS05710	0.53	+0.8
1,235,674	-		LRK54_RS05710	0.53	+1.8
1,235,674	-		LRK54_RS05710	0.53	+1.3
1,235,674	-		LRK54_RS05710	0.53	+0.5
1,235,674	-		LRK54_RS05710	0.53	+0.2
1,235,674	-		LRK54_RS05710	0.53	+4.1
1,235,674	-		LRK54_RS05710	0.53	-0.2
1,235,674	-		LRK54_RS05710	0.53	+0.2
1,235,674	-		LRK54_RS05710	0.53	+0.5
1,235,674	-		LRK54_RS05710	0.53	-0.2
1,235,889	+		LRK54_RS05710	0.69	+0.2
1,235,889	+		LRK54_RS05710	0.69	+2.8
1,235,889	+		LRK54_RS05710	0.69	+0.8
1,235,889	+		LRK54_RS05710	0.69	+1.8
1,235,890	-		LRK54_RS05710	0.69	-1.2
1,235,890	-		LRK54_RS05710	0.69	-1.0
1,235,890	-		LRK54_RS05710	0.69	+2.8
1,235,890	-		LRK54_RS05710	0.69	-0.0
1,235,890	-		LRK54_RS05710	0.69	-0.8
1,235,890	-		LRK54_RS05710	0.69	+3.8
1,235,890	-		LRK54_RS05710	0.69	-0.5
1,235,890	-		LRK54_RS05710	0.69	+0.8
1,235,890	-		LRK54_RS05710	0.69	+2.1
1,235,890	-		LRK54_RS05710	0.69	-0.5
1,235,890	-		LRK54_RS05710	0.69	+1.5
1,235,934	+		LRK54_RS05710	0.72	+1.8
1,235,934	+		LRK54_RS05710	0.72	-0.0
1,235,934	+		LRK54_RS05710	0.72	+0.2
1,235,934	+		LRK54_RS05710	0.72	+0.2
1,235,935	-		LRK54_RS05710	0.72	-0.2
1,235,935	-		LRK54_RS05710	0.72	-0.5
1,235,935	-		LRK54_RS05710	0.72	+3.8
1,235,935	-		LRK54_RS05710	0.72	+0.2
1,235,935	-		LRK54_RS05710	0.72	-0.5
1,235,935	-		LRK54_RS05710	0.72	-0.5
1,235,935	-		LRK54_RS05710	0.72	-0.2
1,235,935	-		LRK54_RS05710	0.72	-0.2
1,235,937	+		LRK54_RS05710	0.73	+0.8
1,235,937	+		LRK54_RS05710	0.73	+0.5
1,235,937	+		LRK54_RS05710	0.73	+0.2
1,235,937	+		LRK54_RS05710	0.73	+0.8
1,235,937	+		LRK54_RS05710	0.73	-0.5
1,235,937	+		LRK54_RS05710	0.73	+1.8
1,235,937	+		LRK54_RS05710	0.73	+1.8
1,235,937	+		LRK54_RS05710	0.73	-1.2
1,235,937	+		LRK54_RS05710	0.73	+1.2
1,235,937	+		LRK54_RS05710	0.73	+2.8
1,235,937	+		LRK54_RS05710	0.73	-0.2
1,235,938	-		LRK54_RS05710	0.73	+1.0
1,235,938	-		LRK54_RS05710	0.73	+0.8
1,235,938	-		LRK54_RS05710	0.73	+0.8
1,235,938	-		LRK54_RS05710	0.73	-0.8
1,235,938	-		LRK54_RS05710	0.73	-1.5
1,235,938	-		LRK54_RS05710	0.73	+2.5
1,235,938	-		LRK54_RS05710	0.73	-0.0
1,236,274	+				+0.8
1,236,275	-				+1.4
1,236,275	-				-0.0
1,236,275	-				+2.8
1,236,275	-				-0.2
1,236,371	+				-1.7
1,236,371	+				+0.8
1,236,372	-				+0.2
1,236,390	+				+1.8
1,236,390	+				-1.2
1,236,390	+				+0.2
1,236,390	+				+1.1
1,236,390	+				+0.8
1,236,390	+				+0.3
1,236,390	+				-0.2
1,236,391	-				-1.7
1,236,391	-				+0.6
1,236,391	-				+1.8
1,236,391	-				+1.8
1,236,391	-				+0.8
1,236,627	+		LRK54_RS05715	0.69	+0.3
1,236,627	+		LRK54_RS05715	0.69	+0.2
1,236,627	+		LRK54_RS05715	0.69	-0.5
1,236,627	+		LRK54_RS05715	0.69	-1.8
1,236,627	+		LRK54_RS05715	0.69	+0.8
1,236,627	+		LRK54_RS05715	0.69	+0.2
1,236,627	+		LRK54_RS05715	0.69	-1.0
1,236,627	+		LRK54_RS05715	0.69	-1.3
1,236,627	+		LRK54_RS05715	0.69	-1.2
1,236,627	+		LRK54_RS05715	0.69	-1.0
1,236,627	+		LRK54_RS05715	0.69	-0.5
1,236,627	+		LRK54_RS05715	0.69	-0.2
1,236,627	+		LRK54_RS05715	0.69	-1.9
1,236,627	+		LRK54_RS05715	0.69	-1.7
1,236,628	-		LRK54_RS05715	0.69	+1.5
1,236,628	-		LRK54_RS05715	0.69	+0.2
1,236,628	-		LRK54_RS05715	0.69	+0.2
1,236,628	-		LRK54_RS05715	0.69	-1.7
1,236,628	-		LRK54_RS05715	0.69	-0.5
1,236,628	-		LRK54_RS05715	0.69	-1.5
1,236,628	-		LRK54_RS05715	0.69	-1.9
1,236,628	-		LRK54_RS05715	0.69	-0.2
1,236,628	-		LRK54_RS05715	0.69	-0.8
1,236,628	-		LRK54_RS05715	0.69	+0.0
1,236,628	-		LRK54_RS05715	0.69	+1.0
1,236,628	-		LRK54_RS05715	0.69	-0.8
1,236,628	-		LRK54_RS05715	0.69	+0.6
1,236,628	-		LRK54_RS05715	0.69	+0.8
1,236,628	-		LRK54_RS05715	0.69	-0.2
1,236,628	-		LRK54_RS05715	0.69	-0.4
1,236,628	-		LRK54_RS05715	0.69	+0.2
1,236,845	+				+0.5
1,236,846	-				+1.8
1,236,846	-				-1.4
1,236,884	+				-1.4
1,236,884	+				-1.6
1,236,884	+				-1.0
1,236,884	+				-1.7
1,236,884	+				-1.6
1,236,885	-				-0.8
1,236,885	-				-0.2
1,236,885	-				+0.2
1,236,973	+				-0.2
1,236,974	-				-0.5
1,236,974	-				-0.5
1,236,974	-				-0.2
1,236,974	-				-1.0
1,236,974	-				-0.6
1,236,974	-				+0.6
1,237,248	+		LRK54_RS05720	0.31	+1.8
1,237,248	+		LRK54_RS05720	0.31	+0.6
1,237,248	+		LRK54_RS05720	0.31	-0.5
1,237,248	+		LRK54_RS05720	0.31	+0.0
1,237,248	+		LRK54_RS05720	0.31	-0.8
1,237,248	+		LRK54_RS05720	0.31	+1.1
1,237,249	-		LRK54_RS05720	0.31	-1.8
1,237,249	-		LRK54_RS05720	0.31	-0.2
1,237,249	-		LRK54_RS05720	0.31	-1.4
1,237,249	-		LRK54_RS05720	0.31	-1.2
1,237,249	-		LRK54_RS05720	0.31	+0.2
1,237,249	-		LRK54_RS05720	0.31	+0.2
1,237,249	-		LRK54_RS05720	0.31	+0.4
1,237,299	+		LRK54_RS05720	0.38	+0.0
1,237,299	+		LRK54_RS05720	0.38	-0.2
1,237,299	+		LRK54_RS05720	0.38	-0.2
1,237,299	+		LRK54_RS05720	0.38	+0.6
1,237,299	+		LRK54_RS05720	0.38	-1.5
1,237,300	-		LRK54_RS05720	0.39	+0.2
1,237,300	-		LRK54_RS05720	0.39	-2.7
1,237,300	-		LRK54_RS05720	0.39	-2.0