Strain Fitness in Pantoea sp. MT58 around IAI47_19960

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19955 and IAI47_19960 are separated by 18 nucleotidesIAI47_19960 and IAI47_19965 are separated by 443 nucleotides IAI47_19955: IAI47_19955 - site-specific integrase, at 218,640 to 219,722 _19955 IAI47_19960: IAI47_19960 - lipid IV(A) palmitoyltransferase PagP, at 219,741 to 220,310 _19960 IAI47_19965: IAI47_19965 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 220,754 to 222,976 _19965 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.786 kb on + strand, within IAI47_19955at 218.787 kb on - strand, within IAI47_19955at 218.879 kb on - strand, within IAI47_19955at 218.954 kb on + strand, within IAI47_19955at 218.988 kb on + strand, within IAI47_19955at 218.988 kb on + strand, within IAI47_19955at 219.118 kb on + strand, within IAI47_19955at 219.118 kb on + strand, within IAI47_19955at 219.185 kb on - strand, within IAI47_19955at 219.217 kb on + strand, within IAI47_19955at 219.218 kb on - strand, within IAI47_19955at 219.218 kb on - strand, within IAI47_19955at 219.218 kb on - strand, within IAI47_19955at 219.245 kb on + strand, within IAI47_19955at 219.245 kb on + strand, within IAI47_19955at 219.246 kb on - strand, within IAI47_19955at 219.246 kb on - strand, within IAI47_19955at 219.447 kb on - strand, within IAI47_19955at 219.480 kb on - strand, within IAI47_19955at 219.503 kb on + strand, within IAI47_19955at 219.503 kb on + strand, within IAI47_19955at 219.558 kb on + strand, within IAI47_19955at 219.558 kb on + strand, within IAI47_19955at 219.558 kb on + strand, within IAI47_19955at 219.559 kb on - strand, within IAI47_19955at 219.559 kb on - strand, within IAI47_19955at 219.559 kb on - strand, within IAI47_19955at 219.559 kb on - strand, within IAI47_19955at 219.573 kb on + strand, within IAI47_19955at 219.573 kb on + strand, within IAI47_19955at 219.573 kb on + strand, within IAI47_19955at 219.629 kb on + strandat 219.630 kb on - strandat 219.645 kb on + strandat 219.666 kb on + strandat 219.667 kb on - strandat 219.702 kb on - strandat 219.702 kb on - strandat 219.786 kb on - strandat 219.786 kb on - strandat 219.786 kb on - strandat 219.786 kb on - strandat 219.800 kb on + strand, within IAI47_19960at 219.801 kb on - strand, within IAI47_19960at 219.802 kb on + strand, within IAI47_19960at 219.802 kb on + strand, within IAI47_19960at 219.802 kb on + strand, within IAI47_19960at 219.802 kb on + strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.803 kb on - strand, within IAI47_19960at 219.830 kb on - strand, within IAI47_19960at 219.871 kb on + strand, within IAI47_19960at 219.871 kb on + strand, within IAI47_19960at 219.871 kb on + strand, within IAI47_19960at 219.872 kb on - strand, within IAI47_19960at 219.872 kb on - strand, within IAI47_19960at 219.872 kb on - strand, within IAI47_19960at 219.872 kb on - strand, within IAI47_19960at 219.907 kb on + strand, within IAI47_19960at 219.908 kb on - strand, within IAI47_19960at 219.908 kb on - strand, within IAI47_19960at 219.967 kb on + strand, within IAI47_19960at 219.993 kb on - strand, within IAI47_19960at 220.005 kb on - strand, within IAI47_19960at 220.005 kb on - strand, within IAI47_19960at 220.015 kb on - strand, within IAI47_19960at 220.015 kb on - strand, within IAI47_19960at 220.015 kb on - strand, within IAI47_19960at 220.018 kb on + strand, within IAI47_19960at 220.018 kb on + strand, within IAI47_19960at 220.018 kb on + strand, within IAI47_19960at 220.018 kb on + strand, within IAI47_19960at 220.019 kb on - strand, within IAI47_19960at 220.019 kb on - strand, within IAI47_19960at 220.019 kb on - strand, within IAI47_19960at 220.089 kb on - strand, within IAI47_19960at 220.090 kb on + strand, within IAI47_19960at 220.090 kb on + strand, within IAI47_19960at 220.091 kb on - strand, within IAI47_19960at 220.094 kb on + strand, within IAI47_19960at 220.097 kb on + strand, within IAI47_19960at 220.100 kb on + strand, within IAI47_19960at 220.100 kb on + strand, within IAI47_19960at 220.101 kb on - strand, within IAI47_19960at 220.114 kb on + strand, within IAI47_19960at 220.114 kb on + strand, within IAI47_19960at 220.136 kb on + strand, within IAI47_19960at 220.136 kb on + strand, within IAI47_19960at 220.136 kb on + strand, within IAI47_19960at 220.137 kb on - strand, within IAI47_19960at 220.137 kb on - strand, within IAI47_19960at 220.139 kb on + strandat 220.150 kb on + strand, within IAI47_19960at 220.150 kb on + strand, within IAI47_19960at 220.151 kb on - strand, within IAI47_19960at 220.151 kb on - strand, within IAI47_19960at 220.193 kb on + strand, within IAI47_19960at 220.193 kb on + strand, within IAI47_19960at 220.232 kb on + strand, within IAI47_19960at 220.232 kb on + strand, within IAI47_19960at 220.233 kb on - strand, within IAI47_19960at 220.233 kb on - strand, within IAI47_19960at 220.274 kb on + strandat 220.274 kb on + strandat 220.274 kb on + strandat 220.274 kb on + strandat 220.274 kb on + strandat 220.275 kb on - strandat 220.275 kb on - strandat 220.275 kb on - strandat 220.327 kb on + strandat 220.327 kb on + strandat 220.328 kb on - strandat 220.328 kb on - strandat 220.338 kb on - strandat 220.338 kb on - strandat 220.338 kb on - strandat 220.338 kb on - strandat 220.341 kb on + strandat 220.342 kb on - strandat 220.342 kb on - strandat 220.433 kb on - strandat 220.474 kb on + strandat 220.474 kb on + strandat 220.566 kb on + strandat 220.676 kb on + strandat 220.676 kb on + strandat 220.715 kb on + strandat 220.726 kb on + strandat 220.726 kb on + strandat 220.727 kb on - strandat 220.734 kb on + strandat 220.735 kb on - strandat 220.740 kb on + strandat 220.741 kb on - strandat 220.741 kb on - strandat 220.752 kb on + strandat 220.786 kb on + strandat 220.786 kb on + strandat 220.787 kb on - strandat 220.787 kb on - strandat 220.861 kb on + strandat 220.861 kb on + strandat 220.861 kb on + strandat 220.861 kb on + strandat 220.861 kb on + strandat 220.861 kb on + strandat 220.861 kb on - strandat 220.862 kb on - strandat 220.862 kb on - strandat 220.862 kb on - strandat 220.862 kb on - strandat 220.862 kb on - strandat 220.971 kb on - strandat 221.105 kb on - strand, within IAI47_19965at 221.134 kb on + strand, within IAI47_19965at 221.146 kb on + strand, within IAI47_19965at 221.146 kb on + strand, within IAI47_19965at 221.146 kb on + strand, within IAI47_19965at 221.147 kb on - strand, within IAI47_19965at 221.147 kb on - strand, within IAI47_19965at 221.150 kb on + strand, within IAI47_19965at 221.150 kb on + strand, within IAI47_19965at 221.151 kb on - strand, within IAI47_19965at 221.151 kb on - strand, within IAI47_19965at 221.151 kb on - strand, within IAI47_19965at 221.153 kb on + strand, within IAI47_19965at 221.153 kb on + strand, within IAI47_19965at 221.153 kb on + strand, within IAI47_19965at 221.153 kb on + strand, within IAI47_19965at 221.154 kb on - strand, within IAI47_19965at 221.154 kb on - strand, within IAI47_19965at 221.154 kb on - strand, within IAI47_19965at 221.154 kb on - strand, within IAI47_19965at 221.154 kb on - strand, within IAI47_19965at 221.168 kb on - strand, within IAI47_19965at 221.168 kb on - strand, within IAI47_19965at 221.168 kb on - strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.180 kb on + strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.181 kb on - strand, within IAI47_19965at 221.182 kb on + strand, within IAI47_19965at 221.182 kb on + strand, within IAI47_19965at 221.183 kb on - strand, within IAI47_19965at 221.183 kb on - strand, within IAI47_19965at 221.183 kb on - strand, within IAI47_19965at 221.255 kb on + strand, within IAI47_19965at 221.255 kb on + strand, within IAI47_19965at 221.255 kb on + strand, within IAI47_19965at 221.255 kb on + strand, within IAI47_19965at 221.255 kb on + strand, within IAI47_19965at 221.256 kb on - strand, within IAI47_19965at 221.256 kb on - strand, within IAI47_19965at 221.256 kb on - strand, within IAI47_19965

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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218,782 + IAI47_19955 0.13 +0.8
218,782 + IAI47_19955 0.13 +2.5
218,782 + IAI47_19955 0.13 -0.5
218,782 + IAI47_19955 0.13 +1.0
218,782 + IAI47_19955 0.13 -0.9
218,782 + IAI47_19955 0.13 +0.5
218,782 + IAI47_19955 0.13 -0.5
218,782 + IAI47_19955 0.13 -1.9
218,782 + IAI47_19955 0.13 +1.7
218,782 + IAI47_19955 0.13 +0.2
218,783 - IAI47_19955 0.13 -1.6
218,783 - IAI47_19955 0.13 -0.8
218,783 - IAI47_19955 0.13 +0.7
218,783 - IAI47_19955 0.13 +0.0
218,783 - IAI47_19955 0.13 -0.4
218,783 - IAI47_19955 0.13 -0.7
218,786 + IAI47_19955 0.13 +0.5
218,787 - IAI47_19955 0.14 +0.5
218,879 - IAI47_19955 0.22 +0.6
218,954 + IAI47_19955 0.29 -1.0
218,988 + IAI47_19955 0.32 +0.6
218,988 + IAI47_19955 0.32 +1.5
219,118 + IAI47_19955 0.44 +2.9
219,118 + IAI47_19955 0.44 +1.5
219,185 - IAI47_19955 0.50 -0.2
219,217 + IAI47_19955 0.53 +0.5
219,218 - IAI47_19955 0.53 +1.3
219,218 - IAI47_19955 0.53 -0.1
219,218 - IAI47_19955 0.53 -0.7
219,245 + IAI47_19955 0.56 -0.2
219,245 + IAI47_19955 0.56 +1.1
219,246 - IAI47_19955 0.56 -0.3
219,246 - IAI47_19955 0.56 -1.4
219,447 - IAI47_19955 0.75 -0.7
219,480 - IAI47_19955 0.78 -1.1
219,503 + IAI47_19955 0.80 +1.5
219,503 + IAI47_19955 0.80 +0.6
219,558 + IAI47_19955 0.85 -0.2
219,558 + IAI47_19955 0.85 +0.2
219,558 + IAI47_19955 0.85 +1.3
219,559 - IAI47_19955 0.85 +0.9
219,559 - IAI47_19955 0.85 -0.2
219,559 - IAI47_19955 0.85 +0.4
219,559 - IAI47_19955 0.85 +0.1
219,573 + IAI47_19955 0.86 -0.9
219,573 + IAI47_19955 0.86 +0.6
219,573 + IAI47_19955 0.86 +0.3
219,629 + -0.4
219,630 - -0.1
219,645 + +0.2
219,666 + -0.7
219,667 - +0.4
219,702 - -0.2
219,702 - -1.7
219,786 - -0.7
219,786 - -0.6
219,786 - +0.9
219,786 - -0.4
219,800 + IAI47_19960 0.10 +0.6
219,801 - IAI47_19960 0.11 +1.1
219,802 + IAI47_19960 0.11 +0.3
219,802 + IAI47_19960 0.11 -1.1
219,802 + IAI47_19960 0.11 -2.8
219,802 + IAI47_19960 0.11 -0.6
219,803 - IAI47_19960 0.11 -1.4
219,803 - IAI47_19960 0.11 -0.7
219,803 - IAI47_19960 0.11 -1.5
219,803 - IAI47_19960 0.11 -0.6
219,803 - IAI47_19960 0.11 +0.4
219,803 - IAI47_19960 0.11 -1.0
219,803 - IAI47_19960 0.11 -1.5
219,803 - IAI47_19960 0.11 -0.1
219,830 - IAI47_19960 0.16 +0.5
219,871 + IAI47_19960 0.23 +1.1
219,871 + IAI47_19960 0.23 -1.0
219,871 + IAI47_19960 0.23 -0.3
219,872 - IAI47_19960 0.23 +0.1
219,872 - IAI47_19960 0.23 +1.5
219,872 - IAI47_19960 0.23 -1.1
219,872 - IAI47_19960 0.23 -0.7
219,907 + IAI47_19960 0.29 -1.2
219,908 - IAI47_19960 0.29 -0.2
219,908 - IAI47_19960 0.29 -0.0
219,967 + IAI47_19960 0.40 +0.2
219,993 - IAI47_19960 0.44 -0.1
220,005 - IAI47_19960 0.46 +0.2
220,005 - IAI47_19960 0.46 +0.9
220,015 - IAI47_19960 0.48 -0.2
220,015 - IAI47_19960 0.48 -2.2
220,015 - IAI47_19960 0.48 +1.1
220,018 + IAI47_19960 0.49 +0.6
220,018 + IAI47_19960 0.49 -0.5
220,018 + IAI47_19960 0.49 -0.5
220,018 + IAI47_19960 0.49 -1.4
220,019 - IAI47_19960 0.49 +0.6
220,019 - IAI47_19960 0.49 -0.6
220,019 - IAI47_19960 0.49 +1.5
220,089 - IAI47_19960 0.61 +0.8
220,090 + IAI47_19960 0.61 -0.8
220,090 + IAI47_19960 0.61 -1.1
220,091 - IAI47_19960 0.61 -0.2
220,094 + IAI47_19960 0.62 -0.5
220,097 + IAI47_19960 0.62 -0.8
220,100 + IAI47_19960 0.63 -1.7
220,100 + IAI47_19960 0.63 -1.1
220,101 - IAI47_19960 0.63 -0.0
220,114 + IAI47_19960 0.65 -0.7
220,114 + IAI47_19960 0.65 -1.1
220,136 + IAI47_19960 0.69 +0.5
220,136 + IAI47_19960 0.69 -1.0
220,136 + IAI47_19960 0.69 -2.3
220,137 - IAI47_19960 0.69 +0.3
220,137 - IAI47_19960 0.69 -1.4
220,139 + +0.5
220,150 + IAI47_19960 0.72 +0.3
220,150 + IAI47_19960 0.72 -0.5
220,151 - IAI47_19960 0.72 -0.8
220,151 - IAI47_19960 0.72 -0.5
220,193 + IAI47_19960 0.79 -1.5
220,193 + IAI47_19960 0.79 -1.6
220,232 + IAI47_19960 0.86 -0.5
220,232 + IAI47_19960 0.86 -1.2
220,233 - IAI47_19960 0.86 -0.3
220,233 - IAI47_19960 0.86 -0.6
220,274 + -0.2
220,274 + +0.3
220,274 + -0.0
220,274 + +0.4
220,274 + +0.1
220,275 - +1.5
220,275 - -0.4
220,275 - +1.5
220,327 + -1.1
220,327 + -2.4
220,328 - +0.3
220,328 - +1.3
220,338 - +1.4
220,338 - -0.2
220,338 - +1.0
220,338 - +0.9
220,341 + -1.9
220,342 - +0.8
220,342 - +1.1
220,433 - -1.0
220,474 + +0.0
220,474 + -0.2
220,566 + -0.4
220,676 + -1.2
220,676 + +2.4
220,715 + +0.0
220,726 + -0.6
220,726 + +0.8
220,727 - +0.5
220,734 + +2.5
220,735 - -0.7
220,740 + +0.5
220,741 - -0.5
220,741 - -1.8
220,752 + +1.8
220,786 + -0.2
220,786 + +0.0
220,787 - -1.2
220,787 - -0.6
220,861 + +0.4
220,861 + -0.5
220,861 + -0.5
220,861 + +0.7
220,861 + -0.0
220,861 + +0.4
220,861 - -1.2
220,862 - -2.1
220,862 - +1.2
220,862 - -1.4
220,862 - +1.3
220,862 - +0.1
220,971 - +1.5
221,105 - IAI47_19965 0.16 +0.1
221,134 + IAI47_19965 0.17 -0.2
221,146 + IAI47_19965 0.18 +0.9
221,146 + IAI47_19965 0.18 -0.5
221,146 + IAI47_19965 0.18 +2.1
221,147 - IAI47_19965 0.18 +1.3
221,147 - IAI47_19965 0.18 -0.7
221,150 + IAI47_19965 0.18 -1.1
221,150 + IAI47_19965 0.18 +0.9
221,151 - IAI47_19965 0.18 +0.1
221,151 - IAI47_19965 0.18 +1.1
221,151 - IAI47_19965 0.18 -0.8
221,153 + IAI47_19965 0.18 -1.4
221,153 + IAI47_19965 0.18 +1.0
221,153 + IAI47_19965 0.18 +1.1
221,153 + IAI47_19965 0.18 -0.3
221,154 - IAI47_19965 0.18 -0.2
221,154 - IAI47_19965 0.18 +0.8
221,154 - IAI47_19965 0.18 +0.9
221,154 - IAI47_19965 0.18 -0.2
221,154 - IAI47_19965 0.18 -0.2
221,168 - IAI47_19965 0.19 +1.3
221,168 - IAI47_19965 0.19 +0.6
221,168 - IAI47_19965 0.19 +0.6
221,180 + IAI47_19965 0.19 -0.1
221,180 + IAI47_19965 0.19 +0.3
221,180 + IAI47_19965 0.19 +1.1
221,180 + IAI47_19965 0.19 +0.3
221,180 + IAI47_19965 0.19 -0.0
221,180 + IAI47_19965 0.19 -1.2
221,180 + IAI47_19965 0.19 -0.9
221,180 + IAI47_19965 0.19 -0.4
221,180 + IAI47_19965 0.19 +2.6
221,180 + IAI47_19965 0.19 +0.4
221,181 - IAI47_19965 0.19 -0.2
221,181 - IAI47_19965 0.19 +2.1
221,181 - IAI47_19965 0.19 +1.2
221,181 - IAI47_19965 0.19 +1.1
221,181 - IAI47_19965 0.19 +0.1
221,181 - IAI47_19965 0.19 -0.8
221,181 - IAI47_19965 0.19 -0.6
221,181 - IAI47_19965 0.19 +2.1
221,181 - IAI47_19965 0.19 -0.2
221,181 - IAI47_19965 0.19 -1.0
221,182 + IAI47_19965 0.19 +0.6
221,182 + IAI47_19965 0.19 +0.3
221,183 - IAI47_19965 0.19 -0.2
221,183 - IAI47_19965 0.19 +1.2
221,183 - IAI47_19965 0.19 -0.6
221,255 + IAI47_19965 0.23 -0.4
221,255 + IAI47_19965 0.23 -0.6
221,255 + IAI47_19965 0.23 -0.4
221,255 + IAI47_19965 0.23 -0.2
221,255 + IAI47_19965 0.23 -0.2
221,256 - IAI47_19965 0.23 -0.1
221,256 - IAI47_19965 0.23 -0.6
221,256 - IAI47_19965 0.23 +0.1

Or see this region's nucleotide sequence