Strain Fitness in Pantoea sp. MT58 around IAI47_09525

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,011,920	+		IAI47_09520	0.77	+0.3
2,011,920	+		IAI47_09520	0.77	+0.3
2,011,920	+		IAI47_09520	0.77	+1.5
2,011,921	-		IAI47_09520	0.77	+1.7
2,012,011	+		IAI47_09520	0.79	+1.6
2,012,011	+		IAI47_09520	0.79	+2.9
2,012,011	+		IAI47_09520	0.79	+2.4
2,012,011	+		IAI47_09520	0.79	-0.8
2,012,012	-		IAI47_09520	0.79	+1.6
2,012,012	-		IAI47_09520	0.79	-0.4
2,012,032	+		IAI47_09520	0.80	+0.2
2,012,032	+		IAI47_09520	0.80	+0.3
2,012,033	-		IAI47_09520	0.80	+0.2
2,012,033	-		IAI47_09520	0.80	-0.5
2,012,033	-		IAI47_09520	0.80	-0.4
2,012,172	+		IAI47_09520	0.83	+0.4
2,012,176	+		IAI47_09520	0.83	+0.3
2,012,177	-		IAI47_09520	0.83	-0.8
2,012,177	-		IAI47_09520	0.83	+1.3
2,012,218	+		IAI47_09520	0.84	+1.3
2,012,218	+		IAI47_09520	0.84	+2.0
2,012,218	+		IAI47_09520	0.84	-1.1
2,012,219	-		IAI47_09520	0.84	+0.5
2,012,224	-		IAI47_09520	0.84	+0.0
2,012,231	-		IAI47_09520	0.85	+0.3
2,012,262	+		IAI47_09520	0.85	+0.4
2,012,262	+		IAI47_09520	0.85	+1.2
2,012,262	+		IAI47_09520	0.85	+0.3
2,012,263	-		IAI47_09520	0.85	-0.5
2,012,263	-		IAI47_09520	0.85	-0.2
2,012,280	+		IAI47_09520	0.86	+0.2
2,012,280	+		IAI47_09520	0.86	+2.2
2,012,280	+		IAI47_09520	0.86	-0.5
2,012,281	-		IAI47_09520	0.86	+0.2
2,012,288	+		IAI47_09520	0.86	-0.5
2,012,288	+		IAI47_09520	0.86	-1.0
2,012,288	+		IAI47_09520	0.86	+0.9
2,012,289	-		IAI47_09520	0.86	+0.6
2,012,427	+		IAI47_09520	0.90	+0.3
2,012,427	+		IAI47_09520	0.90	+0.9
2,012,427	+		IAI47_09520	0.90	-0.5
2,012,427	+		IAI47_09520	0.90	-0.1
2,012,428	-		IAI47_09520	0.90	-0.2
2,012,451	+				+3.4
2,012,451	+				-1.6
2,012,451	+				+0.2
2,012,451	+				-1.2
2,012,451	+				+1.0
2,012,452	-				+0.2
2,012,452	-				+0.8
2,012,452	-				-1.2
2,012,452	-				-0.7
2,012,492	+				+0.5
2,012,492	+				+2.3
2,012,492	+				+0.4
2,012,493	-				-0.5
2,012,493	-				-0.5
2,012,550	+				+2.0
2,012,571	+				-0.5
2,012,572	-				+0.1
2,012,572	-				+0.3
2,012,572	-				-0.1
2,012,572	-				-0.1
2,012,631	-				-0.5
2,012,670	+				-0.3
2,012,670	+				+0.6
2,012,670	+				-0.1
2,012,673	+				+0.8
2,012,674	-				-0.2
2,012,738	+				+0.3
2,012,738	+				-0.0
2,012,738	+				+1.2
2,012,738	+				+0.9
2,012,738	+				+1.6
2,012,738	+				+0.2
2,012,739	-				-1.8
2,012,739	-				-1.1
2,012,739	-				-0.7
2,012,739	-				+0.3
2,012,739	-				+0.8
2,012,742	+				-0.7
2,012,742	+				-0.4
2,012,742	+				+1.4
2,012,743	-				-0.0
2,012,743	-				+1.2
2,012,750	-				-0.2
2,012,765	+				+0.2
2,012,776	+				+0.5
2,012,776	+				+1.9
2,012,776	+				-0.3
2,012,790	+				+1.6
2,012,790	+				+1.1
2,012,820	-				-1.1
2,012,850	-				+0.5
2,012,870	+				-0.0
2,012,871	-				-0.8
2,012,916	-				-1.5
2,012,954	-				-0.8
2,012,994	+		IAI47_09525	0.13	-1.4
2,013,009	-		IAI47_09525	0.15	+0.3
2,013,118	+		IAI47_09525	0.29	+0.5
2,013,126	-		IAI47_09525	0.30	-0.4
2,013,164	+		IAI47_09525	0.34	-1.3
2,013,164	+		IAI47_09525	0.34	-0.0
2,013,165	-		IAI47_09525	0.34	-1.1
2,013,252	+		IAI47_09525	0.45	-0.7
2,013,252	+		IAI47_09525	0.45	-1.5
2,013,252	+		IAI47_09525	0.45	+0.8
2,013,253	-		IAI47_09525	0.45	-0.8
2,013,253	-		IAI47_09525	0.45	+0.2
2,013,255	+		IAI47_09525	0.46	-1.0
2,013,256	-		IAI47_09525	0.46	-0.7
2,013,256	-		IAI47_09525	0.46	-0.0
2,013,256	-		IAI47_09525	0.46	+3.2
2,013,274	+		IAI47_09525	0.48	-1.9
2,013,275	-		IAI47_09525	0.48	-0.1
2,013,275	-		IAI47_09525	0.48	+1.0
2,013,359	+		IAI47_09525	0.58	-0.3
2,013,360	-		IAI47_09525	0.59	-0.2
2,013,360	-		IAI47_09525	0.59	-0.8
2,013,360	-		IAI47_09525	0.59	-0.0
2,013,360	-		IAI47_09525	0.59	+0.1
2,013,495	-		IAI47_09525	0.75	-0.4
2,013,503	+		IAI47_09525	0.76	-1.4
2,013,503	+		IAI47_09525	0.76	-0.0
2,013,551	+		IAI47_09525	0.82	-0.7
2,013,552	-		IAI47_09525	0.82	-0.7
2,013,552	-		IAI47_09525	0.82	-0.4
2,013,552	-		IAI47_09525	0.82	-0.8
2,013,599	+		IAI47_09525	0.88	-0.8
2,013,599	+		IAI47_09525	0.88	-0.7
2,013,599	+		IAI47_09525	0.88	-1.4
2,013,599	+		IAI47_09525	0.88	+0.2
2,013,600	-		IAI47_09525	0.88	+0.6
2,013,614	+		IAI47_09525	0.90	-2.4
2,013,675	+				-0.8
2,013,683	+				-0.4
2,013,695	+				+0.3
2,013,696	-				-0.7
2,013,727	+				-1.3
2,013,727	+				+0.2
2,013,727	+				+0.5
2,013,733	+				-1.8
2,013,733	+				+0.0
2,013,733	+				-0.2
2,013,736	+				-0.4
2,013,736	+				+0.8
2,013,736	+				+0.6
2,013,736	+				+1.7
2,013,736	+				+0.5
2,013,737	-				+1.0
2,013,740	+				-1.5
2,013,740	+				+0.7
2,013,740	+				+0.2
2,013,741	-				+1.2
2,013,741	-				-0.9
2,013,741	-				+1.6
2,013,741	-				+1.4
2,013,741	-				+0.7
2,013,741	-				+1.6
2,013,741	-				+0.9
2,013,744	+				+0.7
2,013,744	+				-1.2
2,013,744	+				-0.5
2,013,749	+				+0.3
2,013,749	+				-0.2
2,013,750	-				-0.3
2,013,753	+				-0.4
2,013,753	+				+0.5
2,013,753	+				-1.1
2,013,753	+				-1.3
2,013,754	-				+0.7
2,013,754	-				-1.1
2,013,754	-				+1.2
2,013,754	-				-1.1
2,013,754	-				-1.9
2,013,755	+				-0.1
2,013,756	-				-1.4
2,013,792	-				-0.0
2,013,804	-				-0.8
2,013,804	-				-0.5
2,013,816	+				-1.0
2,013,852	+				-0.0
2,013,852	+				+2.0
2,013,852	+				-2.1
2,013,853	-				-0.6
2,013,864	+				+0.0
2,013,889	+				+0.4
2,013,889	+				-0.5
2,013,890	-				-1.1
2,013,890	-				+0.4
2,013,956	-				+1.0
2,013,956	-				+1.2
2,013,993	-				-0.6
2,014,038	+				+1.2
2,014,039	-				-0.2
2,014,068	+		IAI47_09530	0.15	+0.6
2,014,068	+		IAI47_09530	0.15	+1.7
2,014,069	-		IAI47_09530	0.15	+0.3
2,014,069	-		IAI47_09530	0.15	+0.7
2,014,072	+		IAI47_09530	0.15	-0.2
2,014,125	+		IAI47_09530	0.25	+2.9
2,014,126	-		IAI47_09530	0.25	+0.1
2,014,152	+		IAI47_09530	0.30	-0.1
2,014,266	+		IAI47_09530	0.52	+1.2
2,014,266	+		IAI47_09530	0.52	+0.0
2,014,266	+		IAI47_09530	0.52	-0.0
2,014,350	+		IAI47_09530	0.68	+0.7
2,014,350	+		IAI47_09530	0.68	+1.8
2,014,351	-		IAI47_09530	0.68	-0.5
2,014,410	+		IAI47_09530	0.79	+0.6
2,014,410	+		IAI47_09530	0.79	-0.5
2,014,410	+		IAI47_09530	0.79	-0.1
2,014,411	-		IAI47_09530	0.79	+0.6
2,014,413	+		IAI47_09530	0.79	-0.0
2,014,413	+		IAI47_09530	0.79	+2.2
2,014,413	+		IAI47_09530	0.79	-1.9
2,014,413	+		IAI47_09530	0.79	+1.9
2,014,413	+		IAI47_09530	0.79	+3.5
2,014,414	-		IAI47_09530	0.80	+0.2
2,014,414	-		IAI47_09530	0.80	+0.2
2,014,414	-		IAI47_09530	0.80	+1.6
2,014,414	-		IAI47_09530	0.80	-0.2
2,014,414	-		IAI47_09530	0.80	-0.2
2,014,414	-		IAI47_09530	0.80	+0.2
2,014,414	-		IAI47_09530	0.80	+0.5
2,014,479	+				-0.7
2,014,479	+				+1.6
2,014,479	+				-1.0
2,014,479	+				-0.4
2,014,479	+				-0.3
2,014,479	+				+0.3
2,014,480	-				+1.0
2,014,480	-				+0.2
2,014,480	-				+1.9
2,014,480	-				+0.7
2,014,485	+				+2.4
2,014,486	-				-0.5
2,014,554	+				+0.2
2,014,554	+				+1.7
2,014,554	+				+2.6
2,014,555	-				-0.7
2,014,555	-				-0.4
2,014,555	-				+0.6
2,014,582	+				+1.3
2,014,582	+				+0.3
2,014,582	+				+0.1
2,014,583	-				+1.5
2,014,583	-				+0.9
2,014,583	-				-0.3
2,014,583	-				-1.2
2,014,583	-				-1.4
2,014,584	+				-0.0
2,014,584	+				-0.5
2,014,631	-				+0.2
2,014,631	-				-0.8
2,014,641	-				+0.9
2,014,682	+				+2.2
2,014,682	+				-0.1
2,014,682	+				+1.0
2,014,682	+				-1.2
2,014,682	+				-0.6
2,014,683	-				+0.6
2,014,683	-				+0.3
2,014,683	-				-0.5
2,014,686	+				-0.2
2,014,686	+				+0.1
2,014,686	+				-0.7
2,014,687	-				+1.0
2,014,687	-				-0.4
2,014,687	-				+0.8
2,014,687	-				-1.0
2,014,687	-				-0.8
2,014,687	-				+0.3
2,014,687	-				+0.9
2,014,689	+				+1.6
2,014,689	+				-0.2
2,014,689	+				+0.4
2,014,689	+				+0.3
2,014,690	-				+1.6
2,014,690	-				+0.2
2,014,694	+				-0.0
2,014,694	+				+0.6
2,014,694	+				+0.3
2,014,694	+				+2.5
2,014,695	-				-1.5
2,014,695	-				-0.4
2,014,695	-				+0.3