Strain Fitness in Pantoea sp. MT58 around IAI47_08955

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_08945 and IAI47_08950 are separated by 341 nucleotidesIAI47_08950 and IAI47_08955 are separated by 5 nucleotidesIAI47_08955 and IAI47_08960 are separated by 39 nucleotidesIAI47_08960 and IAI47_08965 are separated by 16 nucleotides IAI47_08945: IAI47_08945 - glyceraldehyde-3-phosphate dehydrogenase, at 1,891,532 to 1,892,530 _08945 IAI47_08950: IAI47_08950 - peptide-methionine (R)-S-oxide reductase MsrB, at 1,892,872 to 1,893,282 _08950 IAI47_08955: IAI47_08955 - DUF1315 family protein, at 1,893,288 to 1,893,569 _08955 IAI47_08960: IAI47_08960 - bifunctional nicotinamidase/pyrazinamidase, at 1,893,609 to 1,894,217 _08960 IAI47_08965: IAI47_08965 - asparaginase, at 1,894,234 to 1,895,247 _08965 Position (kb) 1893 1894Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1892.684 kb on + strandat 1892.685 kb on - strandat 1892.685 kb on - strandat 1892.685 kb on - strandat 1892.686 kb on + strandat 1892.687 kb on - strandat 1892.687 kb on - strandat 1892.713 kb on + strandat 1892.713 kb on + strandat 1892.713 kb on + strandat 1892.713 kb on + strandat 1892.713 kb on + strandat 1892.713 kb on + strandat 1892.714 kb on - strandat 1892.714 kb on - strandat 1892.714 kb on - strandat 1892.714 kb on - strandat 1892.714 kb on - strandat 1892.714 kb on - strandat 1892.715 kb on + strandat 1892.715 kb on + strandat 1892.715 kb on + strandat 1892.715 kb on + strandat 1892.716 kb on - strandat 1892.717 kb on + strandat 1892.717 kb on + strandat 1892.717 kb on + strandat 1892.718 kb on - strandat 1892.718 kb on - strandat 1892.718 kb on - strandat 1892.807 kb on + strandat 1892.808 kb on - strandat 1892.808 kb on - strandat 1892.823 kb on + strandat 1892.824 kb on - strandat 1892.828 kb on + strandat 1892.829 kb on - strandat 1892.868 kb on + strandat 1892.868 kb on + strandat 1892.929 kb on + strand, within IAI47_08950at 1892.929 kb on + strand, within IAI47_08950at 1892.929 kb on + strand, within IAI47_08950at 1892.930 kb on - strand, within IAI47_08950at 1893.001 kb on + strand, within IAI47_08950at 1893.001 kb on + strand, within IAI47_08950at 1893.001 kb on + strand, within IAI47_08950at 1893.001 kb on + strand, within IAI47_08950at 1893.002 kb on - strand, within IAI47_08950at 1893.002 kb on - strand, within IAI47_08950at 1893.002 kb on - strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.049 kb on + strand, within IAI47_08950at 1893.050 kb on - strand, within IAI47_08950at 1893.050 kb on - strand, within IAI47_08950at 1893.050 kb on - strand, within IAI47_08950at 1893.050 kb on - strand, within IAI47_08950at 1893.089 kb on + strand, within IAI47_08950at 1893.089 kb on + strand, within IAI47_08950at 1893.089 kb on + strand, within IAI47_08950at 1893.089 kb on + strand, within IAI47_08950at 1893.090 kb on - strand, within IAI47_08950at 1893.109 kb on + strand, within IAI47_08950at 1893.109 kb on + strand, within IAI47_08950at 1893.109 kb on + strand, within IAI47_08950at 1893.121 kb on - strand, within IAI47_08950at 1893.121 kb on - strand, within IAI47_08950at 1893.221 kb on - strand, within IAI47_08950at 1893.228 kb on + strand, within IAI47_08950at 1893.228 kb on + strand, within IAI47_08950at 1893.228 kb on + strand, within IAI47_08950at 1893.229 kb on - strand, within IAI47_08950at 1893.229 kb on - strand, within IAI47_08950at 1893.336 kb on + strand, within IAI47_08955at 1893.368 kb on + strand, within IAI47_08955at 1893.368 kb on + strand, within IAI47_08955at 1893.368 kb on + strand, within IAI47_08955at 1893.368 kb on + strand, within IAI47_08955at 1893.369 kb on - strand, within IAI47_08955at 1893.369 kb on - strand, within IAI47_08955at 1893.427 kb on + strand, within IAI47_08955at 1893.428 kb on - strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.467 kb on + strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.468 kb on - strand, within IAI47_08955at 1893.547 kb on + strandat 1893.548 kb on - strandat 1893.548 kb on - strandat 1893.567 kb on + strandat 1893.568 kb on - strandat 1893.582 kb on - strandat 1893.582 kb on - strandat 1893.582 kb on - strandat 1893.604 kb on + strandat 1893.620 kb on + strandat 1893.738 kb on + strand, within IAI47_08960at 1893.738 kb on + strand, within IAI47_08960at 1893.739 kb on - strand, within IAI47_08960at 1893.743 kb on + strand, within IAI47_08960at 1893.744 kb on - strand, within IAI47_08960at 1893.744 kb on - strand, within IAI47_08960at 1893.745 kb on + strand, within IAI47_08960at 1893.745 kb on + strand, within IAI47_08960at 1893.745 kb on + strand, within IAI47_08960at 1893.746 kb on - strand, within IAI47_08960at 1893.746 kb on - strand, within IAI47_08960at 1893.758 kb on - strand, within IAI47_08960at 1893.758 kb on - strand, within IAI47_08960at 1893.862 kb on + strand, within IAI47_08960at 1893.862 kb on + strand, within IAI47_08960at 1893.862 kb on + strand, within IAI47_08960at 1893.863 kb on - strand, within IAI47_08960at 1893.863 kb on - strand, within IAI47_08960at 1893.863 kb on - strand, within IAI47_08960at 1893.863 kb on - strand, within IAI47_08960at 1893.863 kb on - strand, within IAI47_08960at 1893.960 kb on - strand, within IAI47_08960at 1893.960 kb on - strand, within IAI47_08960at 1893.997 kb on - strand, within IAI47_08960at 1893.997 kb on - strand, within IAI47_08960at 1894.012 kb on + strand, within IAI47_08960at 1894.012 kb on + strand, within IAI47_08960at 1894.191 kb on - strandat 1894.196 kb on + strandat 1894.196 kb on + strandat 1894.196 kb on + strandat 1894.197 kb on - strandat 1894.218 kb on + strandat 1894.219 kb on - strandat 1894.219 kb on - strandat 1894.219 kb on - strandat 1894.219 kb on - strandat 1894.322 kb on - strandat 1894.347 kb on + strand, within IAI47_08965at 1894.347 kb on + strand, within IAI47_08965at 1894.348 kb on - strand, within IAI47_08965at 1894.348 kb on - strand, within IAI47_08965at 1894.367 kb on - strand, within IAI47_08965at 1894.367 kb on - strand, within IAI47_08965at 1894.367 kb on - strand, within IAI47_08965at 1894.400 kb on + strand, within IAI47_08965at 1894.410 kb on + strand, within IAI47_08965at 1894.411 kb on - strand, within IAI47_08965at 1894.428 kb on + strand, within IAI47_08965at 1894.428 kb on + strand, within IAI47_08965at 1894.429 kb on - strand, within IAI47_08965at 1894.429 kb on - strand, within IAI47_08965at 1894.429 kb on - strand, within IAI47_08965at 1894.429 kb on - strand, within IAI47_08965at 1894.512 kb on + strand, within IAI47_08965at 1894.523 kb on + strand, within IAI47_08965at 1894.523 kb on + strand, within IAI47_08965at 1894.524 kb on - strand, within IAI47_08965at 1894.567 kb on - strand, within IAI47_08965at 1894.567 kb on - strand, within IAI47_08965at 1894.567 kb on - strand, within IAI47_08965

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,892,684 + +1.1
1,892,685 - +0.6
1,892,685 - +0.5
1,892,685 - +0.4
1,892,686 + +1.1
1,892,687 - +2.0
1,892,687 - +0.5
1,892,713 + +2.7
1,892,713 + -0.5
1,892,713 + +0.6
1,892,713 + +2.0
1,892,713 + -0.5
1,892,713 + +0.9
1,892,714 - +1.1
1,892,714 - +0.9
1,892,714 - +1.1
1,892,714 - -0.8
1,892,714 - -0.6
1,892,714 - +1.7
1,892,715 + +0.5
1,892,715 + -0.4
1,892,715 + +0.7
1,892,715 + -1.1
1,892,716 - +1.2
1,892,717 + +0.6
1,892,717 + +1.1
1,892,717 + -1.3
1,892,718 - +1.2
1,892,718 - +0.1
1,892,718 - +0.9
1,892,807 + +1.6
1,892,808 - +0.2
1,892,808 - -0.4
1,892,823 + -0.4
1,892,824 - +1.9
1,892,828 + -0.3
1,892,829 - +1.5
1,892,868 + +1.9
1,892,868 + +0.5
1,892,929 + IAI47_08950 0.14 +0.8
1,892,929 + IAI47_08950 0.14 +0.6
1,892,929 + IAI47_08950 0.14 +1.3
1,892,930 - IAI47_08950 0.14 +0.9
1,893,001 + IAI47_08950 0.31 +1.1
1,893,001 + IAI47_08950 0.31 +0.6
1,893,001 + IAI47_08950 0.31 +0.3
1,893,001 + IAI47_08950 0.31 +1.1
1,893,002 - IAI47_08950 0.32 +0.8
1,893,002 - IAI47_08950 0.32 -1.0
1,893,002 - IAI47_08950 0.32 -0.1
1,893,049 + IAI47_08950 0.43 +0.4
1,893,049 + IAI47_08950 0.43 +2.1
1,893,049 + IAI47_08950 0.43 +0.0
1,893,049 + IAI47_08950 0.43 -1.2
1,893,049 + IAI47_08950 0.43 +2.5
1,893,049 + IAI47_08950 0.43 +1.5
1,893,049 + IAI47_08950 0.43 -1.6
1,893,049 + IAI47_08950 0.43 +0.3
1,893,049 + IAI47_08950 0.43 -1.0
1,893,050 - IAI47_08950 0.43 +0.6
1,893,050 - IAI47_08950 0.43 +0.1
1,893,050 - IAI47_08950 0.43 +0.3
1,893,050 - IAI47_08950 0.43 +1.4
1,893,089 + IAI47_08950 0.53 +3.6
1,893,089 + IAI47_08950 0.53 -0.6
1,893,089 + IAI47_08950 0.53 -0.1
1,893,089 + IAI47_08950 0.53 +0.3
1,893,090 - IAI47_08950 0.53 -1.2
1,893,109 + IAI47_08950 0.58 -1.0
1,893,109 + IAI47_08950 0.58 +0.9
1,893,109 + IAI47_08950 0.58 -0.8
1,893,121 - IAI47_08950 0.61 +0.5
1,893,121 - IAI47_08950 0.61 +1.9
1,893,221 - IAI47_08950 0.85 -0.5
1,893,228 + IAI47_08950 0.87 -0.1
1,893,228 + IAI47_08950 0.87 +1.6
1,893,228 + IAI47_08950 0.87 +0.1
1,893,229 - IAI47_08950 0.87 +1.4
1,893,229 - IAI47_08950 0.87 +2.1
1,893,336 + IAI47_08955 0.17 -0.3
1,893,368 + IAI47_08955 0.28 +1.3
1,893,368 + IAI47_08955 0.28 +0.7
1,893,368 + IAI47_08955 0.28 -0.4
1,893,368 + IAI47_08955 0.28 +1.1
1,893,369 - IAI47_08955 0.29 +1.8
1,893,369 - IAI47_08955 0.29 +0.2
1,893,427 + IAI47_08955 0.49 +2.1
1,893,428 - IAI47_08955 0.50 -1.7
1,893,467 + IAI47_08955 0.63 +3.1
1,893,467 + IAI47_08955 0.63 +0.4
1,893,467 + IAI47_08955 0.63 +1.7
1,893,467 + IAI47_08955 0.63 +0.9
1,893,467 + IAI47_08955 0.63 +1.8
1,893,467 + IAI47_08955 0.63 +1.9
1,893,467 + IAI47_08955 0.63 +0.8
1,893,467 + IAI47_08955 0.63 +0.4
1,893,467 + IAI47_08955 0.63 +2.7
1,893,467 + IAI47_08955 0.63 +1.1
1,893,468 - IAI47_08955 0.64 +0.6
1,893,468 - IAI47_08955 0.64 -0.3
1,893,468 - IAI47_08955 0.64 +3.1
1,893,468 - IAI47_08955 0.64 +2.1
1,893,468 - IAI47_08955 0.64 +0.7
1,893,468 - IAI47_08955 0.64 +0.3
1,893,468 - IAI47_08955 0.64 -1.1
1,893,468 - IAI47_08955 0.64 +0.3
1,893,468 - IAI47_08955 0.64 +0.7
1,893,468 - IAI47_08955 0.64 +1.3
1,893,468 - IAI47_08955 0.64 -0.2
1,893,468 - IAI47_08955 0.64 +0.3
1,893,468 - IAI47_08955 0.64 -0.6
1,893,547 + +1.2
1,893,548 - -2.0
1,893,548 - +0.3
1,893,567 + +0.4
1,893,568 - +0.3
1,893,582 - +0.6
1,893,582 - +0.1
1,893,582 - +1.1
1,893,604 + +0.5
1,893,620 + +1.5
1,893,738 + IAI47_08960 0.21 -1.6
1,893,738 + IAI47_08960 0.21 +0.3
1,893,739 - IAI47_08960 0.21 -0.7
1,893,743 + IAI47_08960 0.22 -0.6
1,893,744 - IAI47_08960 0.22 -0.3
1,893,744 - IAI47_08960 0.22 +0.3
1,893,745 + IAI47_08960 0.22 -0.3
1,893,745 + IAI47_08960 0.22 -2.0
1,893,745 + IAI47_08960 0.22 -2.1
1,893,746 - IAI47_08960 0.22 +0.7
1,893,746 - IAI47_08960 0.22 -1.2
1,893,758 - IAI47_08960 0.24 -0.0
1,893,758 - IAI47_08960 0.24 -0.6
1,893,862 + IAI47_08960 0.42 -2.2
1,893,862 + IAI47_08960 0.42 +0.5
1,893,862 + IAI47_08960 0.42 -2.1
1,893,863 - IAI47_08960 0.42 -0.7
1,893,863 - IAI47_08960 0.42 -1.5
1,893,863 - IAI47_08960 0.42 -1.9
1,893,863 - IAI47_08960 0.42 -1.5
1,893,863 - IAI47_08960 0.42 +0.5
1,893,960 - IAI47_08960 0.58 -0.9
1,893,960 - IAI47_08960 0.58 -0.6
1,893,997 - IAI47_08960 0.64 -0.5
1,893,997 - IAI47_08960 0.64 -0.3
1,894,012 + IAI47_08960 0.66 -0.7
1,894,012 + IAI47_08960 0.66 -1.4
1,894,191 - +0.1
1,894,196 + -0.6
1,894,196 + -0.9
1,894,196 + +1.1
1,894,197 - -1.2
1,894,218 + -1.0
1,894,219 - -1.1
1,894,219 - -0.0
1,894,219 - -1.5
1,894,219 - +0.7
1,894,322 - +2.1
1,894,347 + IAI47_08965 0.11 +0.1
1,894,347 + IAI47_08965 0.11 -0.6
1,894,348 - IAI47_08965 0.11 +0.4
1,894,348 - IAI47_08965 0.11 +0.2
1,894,367 - IAI47_08965 0.13 +1.3
1,894,367 - IAI47_08965 0.13 +2.4
1,894,367 - IAI47_08965 0.13 +0.7
1,894,400 + IAI47_08965 0.16 -2.2
1,894,410 + IAI47_08965 0.17 +0.9
1,894,411 - IAI47_08965 0.17 -0.0
1,894,428 + IAI47_08965 0.19 -0.5
1,894,428 + IAI47_08965 0.19 -0.8
1,894,429 - IAI47_08965 0.19 +1.1
1,894,429 - IAI47_08965 0.19 +2.2
1,894,429 - IAI47_08965 0.19 +0.3
1,894,429 - IAI47_08965 0.19 +1.7
1,894,512 + IAI47_08965 0.27 -0.9
1,894,523 + IAI47_08965 0.29 +0.3
1,894,523 + IAI47_08965 0.29 -0.4
1,894,524 - IAI47_08965 0.29 +0.1
1,894,567 - IAI47_08965 0.33 +1.7
1,894,567 - IAI47_08965 0.33 +1.8
1,894,567 - IAI47_08965 0.33 -0.3

Or see this region's nucleotide sequence