Strain Fitness in Pantoea sp. MT58 around IAI47_06675

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06670 and IAI47_06675 are separated by 106 nucleotidesIAI47_06675 and IAI47_06680 are separated by 9 nucleotidesIAI47_06680 and IAI47_06685 are separated by 117 nucleotides IAI47_06670: IAI47_06670 - YeiH family putative sulfate export transporter, at 1,389,617 to 1,390,672 _06670 IAI47_06675: IAI47_06675 - DUF1232 domain-containing protein, at 1,390,779 to 1,391,153 _06675 IAI47_06680: IAI47_06680 - LysR family transcriptional regulator, at 1,391,163 to 1,392,029 _06680 IAI47_06685: IAI47_06685 - amino acid permease, at 1,392,147 to 1,393,613 _06685 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1389.835 kb on + strand, within IAI47_06670at 1389.836 kb on - strand, within IAI47_06670at 1389.836 kb on - strand, within IAI47_06670at 1390.063 kb on + strand, within IAI47_06670at 1390.067 kb on + strand, within IAI47_06670at 1390.131 kb on + strand, within IAI47_06670at 1390.131 kb on + strand, within IAI47_06670at 1390.132 kb on - strand, within IAI47_06670at 1390.132 kb on - strand, within IAI47_06670at 1390.135 kb on + strand, within IAI47_06670at 1390.135 kb on + strand, within IAI47_06670at 1390.135 kb on + strand, within IAI47_06670at 1390.135 kb on + strand, within IAI47_06670at 1390.136 kb on - strand, within IAI47_06670at 1390.136 kb on - strand, within IAI47_06670at 1390.136 kb on - strand, within IAI47_06670at 1390.136 kb on - strand, within IAI47_06670at 1390.136 kb on - strand, within IAI47_06670at 1390.174 kb on + strand, within IAI47_06670at 1390.175 kb on - strand, within IAI47_06670at 1390.175 kb on - strand, within IAI47_06670at 1390.175 kb on - strand, within IAI47_06670at 1390.175 kb on - strand, within IAI47_06670at 1390.175 kb on - strand, within IAI47_06670at 1390.205 kb on + strand, within IAI47_06670at 1390.206 kb on - strand, within IAI47_06670at 1390.206 kb on - strand, within IAI47_06670at 1390.226 kb on + strand, within IAI47_06670at 1390.318 kb on + strand, within IAI47_06670at 1390.318 kb on + strand, within IAI47_06670at 1390.318 kb on + strand, within IAI47_06670at 1390.319 kb on - strand, within IAI47_06670at 1390.319 kb on - strand, within IAI47_06670at 1390.321 kb on + strand, within IAI47_06670at 1390.321 kb on + strand, within IAI47_06670at 1390.321 kb on + strand, within IAI47_06670at 1390.321 kb on + strand, within IAI47_06670at 1390.321 kb on + strand, within IAI47_06670at 1390.322 kb on - strand, within IAI47_06670at 1390.322 kb on - strand, within IAI47_06670at 1390.322 kb on - strand, within IAI47_06670at 1390.322 kb on - strand, within IAI47_06670at 1390.322 kb on - strand, within IAI47_06670at 1390.391 kb on + strand, within IAI47_06670at 1390.391 kb on + strand, within IAI47_06670at 1390.391 kb on + strand, within IAI47_06670at 1390.391 kb on + strand, within IAI47_06670at 1390.391 kb on + strand, within IAI47_06670at 1390.392 kb on - strand, within IAI47_06670at 1390.392 kb on - strand, within IAI47_06670at 1390.392 kb on - strand, within IAI47_06670at 1390.452 kb on - strand, within IAI47_06670at 1390.486 kb on + strand, within IAI47_06670at 1390.486 kb on + strand, within IAI47_06670at 1390.486 kb on + strand, within IAI47_06670at 1390.486 kb on + strand, within IAI47_06670at 1390.487 kb on - strand, within IAI47_06670at 1390.487 kb on - strand, within IAI47_06670at 1390.488 kb on + strand, within IAI47_06670at 1390.488 kb on + strand, within IAI47_06670at 1390.489 kb on - strand, within IAI47_06670at 1390.489 kb on - strand, within IAI47_06670at 1390.489 kb on - strand, within IAI47_06670at 1390.495 kb on + strand, within IAI47_06670at 1390.496 kb on - strand, within IAI47_06670at 1390.633 kb on + strandat 1390.633 kb on + strandat 1390.633 kb on + strandat 1390.634 kb on - strandat 1390.634 kb on - strandat 1390.652 kb on - strandat 1390.783 kb on + strandat 1390.783 kb on + strandat 1390.783 kb on + strandat 1390.784 kb on - strandat 1390.784 kb on - strandat 1390.784 kb on - strandat 1390.906 kb on - strand, within IAI47_06675at 1391.027 kb on + strand, within IAI47_06675at 1391.028 kb on - strand, within IAI47_06675at 1391.028 kb on - strand, within IAI47_06675at 1391.028 kb on - strand, within IAI47_06675at 1391.028 kb on - strand, within IAI47_06675at 1391.028 kb on - strand, within IAI47_06675at 1391.119 kb on + strandat 1391.119 kb on + strandat 1391.119 kb on + strandat 1391.127 kb on + strandat 1391.127 kb on + strandat 1391.127 kb on + strandat 1391.127 kb on + strandat 1391.128 kb on - strandat 1391.128 kb on - strandat 1391.128 kb on - strandat 1391.128 kb on - strandat 1391.128 kb on - strandat 1391.151 kb on + strandat 1391.151 kb on + strandat 1391.151 kb on + strandat 1391.151 kb on + strandat 1391.171 kb on + strandat 1391.171 kb on + strandat 1391.171 kb on + strandat 1391.171 kb on + strandat 1391.171 kb on + strandat 1391.171 kb on + strandat 1391.172 kb on - strandat 1391.172 kb on - strandat 1391.172 kb on - strandat 1391.172 kb on - strandat 1391.172 kb on - strandat 1391.172 kb on - strandat 1391.338 kb on + strand, within IAI47_06680at 1391.338 kb on + strand, within IAI47_06680at 1391.338 kb on + strand, within IAI47_06680at 1391.339 kb on - strand, within IAI47_06680at 1391.362 kb on - strand, within IAI47_06680at 1391.462 kb on + strand, within IAI47_06680at 1391.462 kb on + strand, within IAI47_06680at 1391.462 kb on + strand, within IAI47_06680at 1391.463 kb on - strand, within IAI47_06680at 1391.463 kb on - strand, within IAI47_06680at 1391.463 kb on - strand, within IAI47_06680at 1391.466 kb on + strand, within IAI47_06680at 1391.466 kb on + strand, within IAI47_06680at 1391.466 kb on + strand, within IAI47_06680at 1391.466 kb on + strand, within IAI47_06680at 1391.467 kb on - strand, within IAI47_06680at 1391.467 kb on - strand, within IAI47_06680at 1391.493 kb on + strand, within IAI47_06680at 1391.769 kb on + strand, within IAI47_06680at 1391.769 kb on + strand, within IAI47_06680at 1391.770 kb on - strand, within IAI47_06680at 1391.959 kb on - strandat 1391.984 kb on + strandat 1391.984 kb on + strandat 1391.984 kb on + strandat 1391.984 kb on + strandat 1391.984 kb on + strandat 1391.984 kb on + strandat 1391.985 kb on - strandat 1392.015 kb on + strandat 1392.016 kb on - strandat 1392.038 kb on - strandat 1392.060 kb on + strandat 1392.061 kb on - strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.065 kb on + strandat 1392.066 kb on - strandat 1392.066 kb on - strandat 1392.066 kb on - strandat 1392.066 kb on - strandat 1392.066 kb on - strandat 1392.066 kb on - strandat 1392.067 kb on + strandat 1392.067 kb on + strandat 1392.068 kb on - strandat 1392.068 kb on - strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.085 kb on + strandat 1392.086 kb on - strandat 1392.086 kb on - strandat 1392.086 kb on - strandat 1392.086 kb on - strandat 1392.086 kb on - strandat 1392.087 kb on + strandat 1392.087 kb on + strandat 1392.087 kb on + strandat 1392.087 kb on + strandat 1392.088 kb on - strandat 1392.088 kb on - strandat 1392.107 kb on + strandat 1392.107 kb on + strandat 1392.136 kb on - strandat 1392.136 kb on - strandat 1392.152 kb on + strandat 1392.152 kb on + strandat 1392.152 kb on + strandat 1392.152 kb on + strandat 1392.152 kb on + strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strandat 1392.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,389,835 + IAI47_06670 0.21 -1.9
1,389,836 - IAI47_06670 0.21 +0.5
1,389,836 - IAI47_06670 0.21 +2.1
1,390,063 + IAI47_06670 0.42 -0.1
1,390,067 + IAI47_06670 0.43 -2.2
1,390,131 + IAI47_06670 0.49 -1.0
1,390,131 + IAI47_06670 0.49 +0.9
1,390,132 - IAI47_06670 0.49 +0.6
1,390,132 - IAI47_06670 0.49 +0.2
1,390,135 + IAI47_06670 0.49 +0.7
1,390,135 + IAI47_06670 0.49 -0.7
1,390,135 + IAI47_06670 0.49 -0.6
1,390,135 + IAI47_06670 0.49 -0.2
1,390,136 - IAI47_06670 0.49 +0.7
1,390,136 - IAI47_06670 0.49 -1.1
1,390,136 - IAI47_06670 0.49 -0.2
1,390,136 - IAI47_06670 0.49 -1.0
1,390,136 - IAI47_06670 0.49 -0.7
1,390,174 + IAI47_06670 0.53 -1.5
1,390,175 - IAI47_06670 0.53 -0.3
1,390,175 - IAI47_06670 0.53 -1.7
1,390,175 - IAI47_06670 0.53 +0.2
1,390,175 - IAI47_06670 0.53 -0.4
1,390,175 - IAI47_06670 0.53 -0.3
1,390,205 + IAI47_06670 0.56 +1.2
1,390,206 - IAI47_06670 0.56 +0.6
1,390,206 - IAI47_06670 0.56 +1.7
1,390,226 + IAI47_06670 0.58 -1.5
1,390,318 + IAI47_06670 0.66 -0.1
1,390,318 + IAI47_06670 0.66 -0.4
1,390,318 + IAI47_06670 0.66 -0.7
1,390,319 - IAI47_06670 0.66 -0.4
1,390,319 - IAI47_06670 0.66 +0.3
1,390,321 + IAI47_06670 0.67 -1.5
1,390,321 + IAI47_06670 0.67 +1.1
1,390,321 + IAI47_06670 0.67 +1.3
1,390,321 + IAI47_06670 0.67 +0.3
1,390,321 + IAI47_06670 0.67 +0.1
1,390,322 - IAI47_06670 0.67 +2.9
1,390,322 - IAI47_06670 0.67 -0.3
1,390,322 - IAI47_06670 0.67 +0.1
1,390,322 - IAI47_06670 0.67 +0.5
1,390,322 - IAI47_06670 0.67 -0.3
1,390,391 + IAI47_06670 0.73 +0.0
1,390,391 + IAI47_06670 0.73 -0.7
1,390,391 + IAI47_06670 0.73 -0.7
1,390,391 + IAI47_06670 0.73 -0.3
1,390,391 + IAI47_06670 0.73 +0.6
1,390,392 - IAI47_06670 0.73 -0.9
1,390,392 - IAI47_06670 0.73 +0.7
1,390,392 - IAI47_06670 0.73 -0.5
1,390,452 - IAI47_06670 0.79 +1.7
1,390,486 + IAI47_06670 0.82 +1.0
1,390,486 + IAI47_06670 0.82 -1.2
1,390,486 + IAI47_06670 0.82 +0.1
1,390,486 + IAI47_06670 0.82 +0.1
1,390,487 - IAI47_06670 0.82 -0.5
1,390,487 - IAI47_06670 0.82 -0.2
1,390,488 + IAI47_06670 0.82 -0.3
1,390,488 + IAI47_06670 0.82 +0.1
1,390,489 - IAI47_06670 0.83 +0.3
1,390,489 - IAI47_06670 0.83 -1.8
1,390,489 - IAI47_06670 0.83 +0.9
1,390,495 + IAI47_06670 0.83 -0.4
1,390,496 - IAI47_06670 0.83 +0.6
1,390,633 + -0.1
1,390,633 + -0.9
1,390,633 + -0.9
1,390,634 - +2.9
1,390,634 - -0.8
1,390,652 - +1.0
1,390,783 + +1.3
1,390,783 + -0.8
1,390,783 + -1.3
1,390,784 - -0.8
1,390,784 - +0.4
1,390,784 - -1.3
1,390,906 - IAI47_06675 0.34 -1.1
1,391,027 + IAI47_06675 0.66 +1.6
1,391,028 - IAI47_06675 0.66 -0.5
1,391,028 - IAI47_06675 0.66 -2.7
1,391,028 - IAI47_06675 0.66 -0.1
1,391,028 - IAI47_06675 0.66 -1.3
1,391,028 - IAI47_06675 0.66 -0.5
1,391,119 + +0.4
1,391,119 + +0.1
1,391,119 + -1.1
1,391,127 + -0.1
1,391,127 + -0.5
1,391,127 + -1.3
1,391,127 + -0.8
1,391,128 - +0.2
1,391,128 - -0.1
1,391,128 - -0.2
1,391,128 - +0.2
1,391,128 - -1.4
1,391,151 + +0.5
1,391,151 + -0.1
1,391,151 + -0.8
1,391,151 + +0.7
1,391,171 + +3.1
1,391,171 + +1.3
1,391,171 + +1.6
1,391,171 + +0.8
1,391,171 + +1.6
1,391,171 + +2.3
1,391,172 - -0.2
1,391,172 - +0.5
1,391,172 - +0.9
1,391,172 - -1.6
1,391,172 - +1.5
1,391,172 - +0.3
1,391,338 + IAI47_06680 0.20 +1.8
1,391,338 + IAI47_06680 0.20 +0.6
1,391,338 + IAI47_06680 0.20 +1.0
1,391,339 - IAI47_06680 0.20 +0.5
1,391,362 - IAI47_06680 0.23 +0.5
1,391,462 + IAI47_06680 0.34 +0.2
1,391,462 + IAI47_06680 0.34 +0.1
1,391,462 + IAI47_06680 0.34 +0.3
1,391,463 - IAI47_06680 0.35 -1.0
1,391,463 - IAI47_06680 0.35 -0.8
1,391,463 - IAI47_06680 0.35 -1.7
1,391,466 + IAI47_06680 0.35 +1.2
1,391,466 + IAI47_06680 0.35 +2.4
1,391,466 + IAI47_06680 0.35 +1.4
1,391,466 + IAI47_06680 0.35 +0.2
1,391,467 - IAI47_06680 0.35 -0.9
1,391,467 - IAI47_06680 0.35 -0.2
1,391,493 + IAI47_06680 0.38 -0.5
1,391,769 + IAI47_06680 0.70 +0.8
1,391,769 + IAI47_06680 0.70 +0.9
1,391,770 - IAI47_06680 0.70 +1.0
1,391,959 - -0.4
1,391,984 + -0.2
1,391,984 + -1.0
1,391,984 + +0.3
1,391,984 + +1.5
1,391,984 + -0.2
1,391,984 + +0.6
1,391,985 - +1.2
1,392,015 + +1.1
1,392,016 - -0.2
1,392,038 - -2.0
1,392,060 + +0.3
1,392,061 - +0.3
1,392,065 + +0.3
1,392,065 + -0.2
1,392,065 + -0.1
1,392,065 + +1.7
1,392,065 + -0.2
1,392,065 + +1.3
1,392,065 + +0.0
1,392,065 + +1.3
1,392,065 + -1.0
1,392,066 - -0.0
1,392,066 - +1.0
1,392,066 - +0.1
1,392,066 - +0.1
1,392,066 - +2.0
1,392,066 - +1.5
1,392,067 + +0.3
1,392,067 + +0.1
1,392,068 - -0.4
1,392,068 - -0.3
1,392,085 + +2.1
1,392,085 + +1.1
1,392,085 + +1.0
1,392,085 + -0.6
1,392,085 + +0.0
1,392,085 + -1.2
1,392,085 + -0.4
1,392,086 - -0.6
1,392,086 - +0.5
1,392,086 - +0.6
1,392,086 - +0.8
1,392,086 - +0.2
1,392,087 + +0.8
1,392,087 + +0.8
1,392,087 + -0.7
1,392,087 + +2.1
1,392,088 - +0.2
1,392,088 - +0.3
1,392,107 + +0.6
1,392,107 + +1.9
1,392,136 - +2.7
1,392,136 - +1.3
1,392,152 + +1.5
1,392,152 + +0.1
1,392,152 + -0.8
1,392,152 + -0.2
1,392,152 + +1.3
1,392,153 - +0.1
1,392,153 - -0.2
1,392,153 - +0.6
1,392,153 - -0.5
1,392,153 - -1.4
1,392,153 - -0.8
1,392,153 - -0.3
1,392,153 - +0.2

Or see this region's nucleotide sequence