Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04425 and IAI47_04430 overlap by 1 nucleotides IAI47_04430 and IAI47_04435 are separated by 114 nucleotides IAI47_04435 and IAI47_04440 are separated by 473 nucleotides
IAI47_04425: IAI47_04425 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 926,964 to 927,941
_04425
IAI47_04430: IAI47_04430 - polyphenol oxidase, at 927,941 to 928,669
_04430
IAI47_04435: IAI47_04435 - ATP-dependent chaperone ClpB, at 928,784 to 931,369
_04435
IAI47_04440: IAI47_04440 - 16S ribosomal RNA, at 931,843 to 933,389
_04440
Position (kb) 928
929
930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 927.822 kb on + strand, within IAI47_04425 at 927.822 kb on + strand, within IAI47_04425 at 927.839 kb on + strand, within IAI47_04425 at 927.887 kb on - strand at 927.921 kb on - strand at 927.952 kb on + strand at 927.953 kb on - strand at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.014 kb on + strand, within IAI47_04430 at 928.015 kb on - strand, within IAI47_04430 at 928.015 kb on - strand, within IAI47_04430 at 928.015 kb on - strand, within IAI47_04430 at 928.063 kb on + strand, within IAI47_04430 at 928.063 kb on + strand, within IAI47_04430 at 928.063 kb on + strand, within IAI47_04430 at 928.064 kb on - strand, within IAI47_04430 at 928.084 kb on + strand, within IAI47_04430 at 928.084 kb on + strand, within IAI47_04430 at 928.085 kb on - strand, within IAI47_04430 at 928.085 kb on - strand, within IAI47_04430 at 928.105 kb on + strand, within IAI47_04430 at 928.105 kb on + strand, within IAI47_04430 at 928.106 kb on - strand, within IAI47_04430 at 928.123 kb on + strand, within IAI47_04430 at 928.124 kb on - strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.194 kb on + strand, within IAI47_04430 at 928.195 kb on - strand, within IAI47_04430 at 928.195 kb on - strand, within IAI47_04430 at 928.213 kb on + strand, within IAI47_04430 at 928.214 kb on - strand, within IAI47_04430 at 928.338 kb on + strand, within IAI47_04430 at 928.349 kb on - strand, within IAI47_04430 at 928.454 kb on - strand, within IAI47_04430 at 928.454 kb on - strand, within IAI47_04430 at 928.516 kb on + strand, within IAI47_04430 at 928.516 kb on + strand, within IAI47_04430 at 928.516 kb on + strand, within IAI47_04430 at 928.517 kb on - strand, within IAI47_04430 at 928.517 kb on - strand, within IAI47_04430 at 928.517 kb on - strand, within IAI47_04430 at 928.517 kb on - strand, within IAI47_04430 at 928.585 kb on + strand, within IAI47_04430 at 928.585 kb on + strand, within IAI47_04430 at 928.585 kb on + strand, within IAI47_04430 at 928.585 kb on + strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.586 kb on - strand, within IAI47_04430 at 928.592 kb on - strand, within IAI47_04430 at 928.630 kb on + strand at 928.630 kb on + strand at 928.630 kb on + strand at 928.630 kb on + strand at 928.631 kb on - strand at 928.631 kb on - strand at 928.642 kb on + strand at 928.653 kb on + strand at 928.654 kb on - strand at 928.654 kb on - strand at 928.665 kb on + strand at 928.666 kb on - strand at 928.666 kb on - strand at 928.666 kb on - strand at 928.667 kb on + strand at 928.667 kb on + strand at 928.668 kb on - strand at 928.668 kb on - strand at 928.668 kb on - strand at 928.668 kb on - strand at 928.673 kb on + strand at 928.674 kb on - strand at 928.674 kb on - strand at 928.680 kb on + strand at 928.680 kb on + strand at 928.681 kb on - strand at 928.681 kb on - strand at 928.694 kb on + strand at 928.694 kb on + strand at 928.694 kb on + strand at 928.695 kb on - strand at 928.695 kb on - strand at 928.706 kb on + strand at 928.706 kb on + strand at 928.725 kb on + strand at 928.726 kb on - strand at 928.757 kb on + strand at 928.757 kb on + strand at 928.758 kb on - strand at 928.758 kb on - strand at 928.768 kb on - strand at 928.783 kb on - strand at 928.795 kb on + strand at 928.795 kb on + strand at 928.795 kb on + strand at 928.796 kb on - strand at 928.796 kb on - strand at 928.796 kb on - strand at 928.796 kb on - strand at 928.796 kb on - strand at 928.813 kb on + strand at 928.813 kb on + strand at 928.813 kb on + strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.817 kb on - strand at 928.817 kb on - strand at 928.817 kb on - strand at 928.817 kb on - strand at 928.912 kb on + strand at 928.912 kb on + strand at 928.912 kb on + strand at 928.912 kb on + strand at 928.913 kb on - strand at 928.913 kb on - strand at 928.941 kb on + strand at 928.941 kb on + strand at 928.942 kb on - strand at 929.067 kb on + strand, within IAI47_04435 at 929.068 kb on - strand, within IAI47_04435 at 929.068 kb on - strand, within IAI47_04435 at 929.068 kb on - strand, within IAI47_04435 at 929.068 kb on - strand, within IAI47_04435 at 929.068 kb on - strand, within IAI47_04435 at 929.081 kb on - strand, within IAI47_04435 at 929.081 kb on - strand, within IAI47_04435 at 929.104 kb on + strand, within IAI47_04435 at 929.104 kb on + strand, within IAI47_04435 at 929.110 kb on + strand, within IAI47_04435 at 929.110 kb on + strand, within IAI47_04435 at 929.111 kb on - strand, within IAI47_04435 at 929.111 kb on - strand, within IAI47_04435 at 929.111 kb on - strand, within IAI47_04435 at 929.124 kb on + strand, within IAI47_04435 at 929.125 kb on - strand, within IAI47_04435 at 929.277 kb on + strand, within IAI47_04435 at 929.277 kb on + strand, within IAI47_04435 at 929.277 kb on + strand, within IAI47_04435 at 929.277 kb on + strand, within IAI47_04435 at 929.278 kb on - strand, within IAI47_04435 at 929.285 kb on + strand, within IAI47_04435 at 929.285 kb on + strand, within IAI47_04435 at 929.285 kb on + strand, within IAI47_04435 at 929.285 kb on + strand, within IAI47_04435 at 929.285 kb on + strand, within IAI47_04435 at 929.286 kb on - strand, within IAI47_04435 at 929.286 kb on - strand, within IAI47_04435 at 929.286 kb on - strand, within IAI47_04435 at 929.286 kb on - strand, within IAI47_04435 at 929.365 kb on + strand, within IAI47_04435 at 929.428 kb on + strand, within IAI47_04435 at 929.428 kb on + strand, within IAI47_04435 at 929.467 kb on + strand, within IAI47_04435 at 929.519 kb on - strand, within IAI47_04435 at 929.546 kb on + strand, within IAI47_04435 at 929.546 kb on + strand, within IAI47_04435 at 929.623 kb on + strand, within IAI47_04435 at 929.623 kb on + strand, within IAI47_04435 at 929.641 kb on + strand, within IAI47_04435 at 929.641 kb on + strand, within IAI47_04435 at 929.641 kb on + strand, within IAI47_04435 at 929.641 kb on + strand, within IAI47_04435 at 929.642 kb on - strand, within IAI47_04435 at 929.642 kb on - strand, within IAI47_04435 at 929.642 kb on - strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.686 kb on + strand, within IAI47_04435 at 929.687 kb on - strand, within IAI47_04435 at 929.687 kb on - strand, within IAI47_04435 at 929.687 kb on - strand, within IAI47_04435 at 929.687 kb on - strand, within IAI47_04435 at 929.687 kb on - strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.692 kb on + strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.693 kb on - strand, within IAI47_04435 at 929.750 kb on + strand, within IAI47_04435 at 929.750 kb on + strand, within IAI47_04435 at 929.751 kb on - strand, within IAI47_04435 at 929.759 kb on + strand, within IAI47_04435 at 929.759 kb on + strand, within IAI47_04435 at 929.759 kb on + strand, within IAI47_04435 at 929.759 kb on + strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.760 kb on - strand, within IAI47_04435 at 929.761 kb on + strand, within IAI47_04435 at 929.761 kb on + strand, within IAI47_04435 at 929.761 kb on + strand, within IAI47_04435 at 929.761 kb on + strand, within IAI47_04435 at 929.864 kb on + strand, within IAI47_04435 at 929.864 kb on + strand, within IAI47_04435 at 929.865 kb on - strand, within IAI47_04435 at 929.933 kb on + strand, within IAI47_04435 at 929.933 kb on + strand, within IAI47_04435 at 929.934 kb on - strand, within IAI47_04435 at 929.934 kb on - strand, within IAI47_04435 at 929.934 kb on - strand, within IAI47_04435 at 929.995 kb on + strand, within IAI47_04435 at 929.995 kb on + strand, within IAI47_04435 at 929.995 kb on + strand, within IAI47_04435 at 929.996 kb on - strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.001 kb on + strand, within IAI47_04435 at 930.002 kb on - strand, within IAI47_04435 at 930.002 kb on - strand, within IAI47_04435 at 930.002 kb on - strand, within IAI47_04435 at 930.049 kb on + strand, within IAI47_04435 at 930.049 kb on + strand, within IAI47_04435 at 930.050 kb on - strand, within IAI47_04435 at 930.055 kb on + strand, within IAI47_04435 at 930.158 kb on + strand, within IAI47_04435 at 930.158 kb on + strand, within IAI47_04435 at 930.159 kb on - strand, within IAI47_04435 at 930.159 kb on - strand, within IAI47_04435 at 930.159 kb on - strand, within IAI47_04435 at 930.252 kb on + strand, within IAI47_04435 at 930.302 kb on + strand, within IAI47_04435 at 930.302 kb on + strand, within IAI47_04435 at 930.303 kb on - strand, within IAI47_04435 at 930.303 kb on - strand, within IAI47_04435 at 930.303 kb on - strand, within IAI47_04435 at 930.333 kb on + strand, within IAI47_04435 at 930.358 kb on + strand, within IAI47_04435 at 930.358 kb on + strand, within IAI47_04435 at 930.358 kb on + strand, within IAI47_04435 at 930.358 kb on + strand, within IAI47_04435 at 930.359 kb on - strand, within IAI47_04435 at 930.359 kb on - strand, within IAI47_04435 at 930.372 kb on + strand, within IAI47_04435 at 930.372 kb on + strand, within IAI47_04435 at 930.373 kb on - strand, within IAI47_04435 at 930.392 kb on + strand, within IAI47_04435 at 930.411 kb on + strand, within IAI47_04435 at 930.411 kb on + strand, within IAI47_04435 at 930.411 kb on + strand, within IAI47_04435 at 930.412 kb on - strand, within IAI47_04435 at 930.412 kb on - strand, within IAI47_04435 at 930.412 kb on - strand, within IAI47_04435 at 930.466 kb on + strand, within IAI47_04435 at 930.466 kb on + strand, within IAI47_04435 at 930.467 kb on - strand, within IAI47_04435 at 930.525 kb on + strand, within IAI47_04435 at 930.547 kb on - strand, within IAI47_04435 at 930.553 kb on + strand, within IAI47_04435 at 930.577 kb on + strand, within IAI47_04435 at 930.586 kb on + strand, within IAI47_04435 at 930.625 kb on + strand, within IAI47_04435 at 930.625 kb on + strand, within IAI47_04435 at 930.625 kb on + strand, within IAI47_04435 at 930.625 kb on + strand, within IAI47_04435 at 930.626 kb on - strand, within IAI47_04435 at 930.626 kb on - strand, within IAI47_04435 at 930.626 kb on - strand, within IAI47_04435 at 930.626 kb on - strand, within IAI47_04435 at 930.640 kb on + strand, within IAI47_04435 at 930.640 kb on + strand, within IAI47_04435 at 930.640 kb on + strand, within IAI47_04435 at 930.640 kb on + strand, within IAI47_04435 at 930.640 kb on + strand, within IAI47_04435 at 930.641 kb on - strand, within IAI47_04435 at 930.641 kb on - strand, within IAI47_04435 at 930.653 kb on - strand, within IAI47_04435 at 930.689 kb on - strand, within IAI47_04435 at 930.706 kb on + strand, within IAI47_04435 at 930.752 kb on + strand, within IAI47_04435 at 930.762 kb on - strand, within IAI47_04435 at 930.776 kb on + strand, within IAI47_04435 at 930.777 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.807 kb on - strand, within IAI47_04435 at 930.911 kb on - strand, within IAI47_04435 at 930.950 kb on - strand, within IAI47_04435 at 930.950 kb on - strand, within IAI47_04435 at 930.967 kb on - strand, within IAI47_04435 at 930.967 kb on - strand, within IAI47_04435 at 930.967 kb on - strand, within IAI47_04435 at 930.967 kb on - strand, within IAI47_04435 at 931.012 kb on + strand, within IAI47_04435 at 931.013 kb on - strand, within IAI47_04435 at 931.013 kb on - strand, within IAI47_04435 at 931.013 kb on - strand, within IAI47_04435 at 931.013 kb on - strand, within IAI47_04435 at 931.063 kb on + strand, within IAI47_04435 at 931.063 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.074 kb on + strand, within IAI47_04435 at 931.075 kb on - strand, within IAI47_04435 at 931.075 kb on - strand, within IAI47_04435 at 931.075 kb on - strand, within IAI47_04435 at 931.142 kb on + strand at 931.142 kb on + strand at 931.142 kb on + strand at 931.142 kb on + strand at 931.143 kb on - strand at 931.167 kb on - strand at 931.194 kb on - strand at 931.217 kb on + strand at 931.218 kb on - strand at 931.229 kb on + strand at 931.229 kb on + strand at 931.229 kb on + strand at 931.230 kb on - strand at 931.230 kb on - strand at 931.230 kb on - strand at 931.230 kb on - strand at 931.257 kb on + strand at 931.257 kb on + strand at 931.257 kb on + strand at 931.318 kb on + strand at 931.367 kb on + strand at 931.367 kb on + strand at 931.368 kb on - strand at 931.368 kb on - strand at 931.370 kb on + strand at 931.371 kb on - strand at 931.371 kb on - strand at 931.416 kb on + strand at 931.416 kb on + strand at 931.416 kb on + strand at 931.417 kb on - strand at 931.432 kb on + strand at 931.436 kb on + strand at 931.436 kb on + strand at 931.436 kb on + strand at 931.436 kb on + strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.437 kb on - strand at 931.514 kb on - strand at 931.514 kb on - strand at 931.514 kb on - strand at 931.516 kb on - strand at 931.516 kb on - strand at 931.516 kb on - strand at 931.516 kb on - strand at 931.516 kb on - strand at 931.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 927,822 + IAI47_04425 0.88 +1.2 927,822 + IAI47_04425 0.88 +2.0 927,839 + IAI47_04425 0.89 +1.7 927,887 - +0.4 927,921 - -1.1 927,952 + +0.2 927,953 - +1.7 928,014 + IAI47_04430 0.10 +2.1 928,014 + IAI47_04430 0.10 -2.1 928,014 + IAI47_04430 0.10 -0.3 928,014 + IAI47_04430 0.10 +0.8 928,014 + IAI47_04430 0.10 +3.3 928,014 + IAI47_04430 0.10 +1.5 928,014 + IAI47_04430 0.10 +0.3 928,014 + IAI47_04430 0.10 +1.6 928,014 + IAI47_04430 0.10 -0.0 928,015 - IAI47_04430 0.10 -2.7 928,015 - IAI47_04430 0.10 -0.9 928,015 - IAI47_04430 0.10 +1.4 928,063 + IAI47_04430 0.17 +0.6 928,063 + IAI47_04430 0.17 +1.6 928,063 + IAI47_04430 0.17 -1.1 928,064 - IAI47_04430 0.17 -0.5 928,084 + IAI47_04430 0.20 +1.9 928,084 + IAI47_04430 0.20 -1.3 928,085 - IAI47_04430 0.20 -0.8 928,085 - IAI47_04430 0.20 +1.3 928,105 + IAI47_04430 0.22 +1.7 928,105 + IAI47_04430 0.22 -0.2 928,106 - IAI47_04430 0.23 -0.4 928,123 + IAI47_04430 0.25 +0.5 928,124 - IAI47_04430 0.25 -0.3 928,194 + IAI47_04430 0.35 +1.1 928,194 + IAI47_04430 0.35 +1.1 928,194 + IAI47_04430 0.35 +0.2 928,194 + IAI47_04430 0.35 -1.8 928,194 + IAI47_04430 0.35 +1.9 928,194 + IAI47_04430 0.35 +3.7 928,194 + IAI47_04430 0.35 +1.3 928,195 - IAI47_04430 0.35 -1.4 928,195 - IAI47_04430 0.35 -2.0 928,213 + IAI47_04430 0.37 -2.0 928,214 - IAI47_04430 0.37 -1.9 928,338 + IAI47_04430 0.54 +3.0 928,349 - IAI47_04430 0.56 +0.6 928,454 - IAI47_04430 0.70 +0.4 928,454 - IAI47_04430 0.70 -0.1 928,516 + IAI47_04430 0.79 +1.2 928,516 + IAI47_04430 0.79 -0.1 928,516 + IAI47_04430 0.79 +0.1 928,517 - IAI47_04430 0.79 +0.8 928,517 - IAI47_04430 0.79 -1.0 928,517 - IAI47_04430 0.79 -0.7 928,517 - IAI47_04430 0.79 -0.7 928,585 + IAI47_04430 0.88 -0.8 928,585 + IAI47_04430 0.88 -0.2 928,585 + IAI47_04430 0.88 -1.1 928,585 + IAI47_04430 0.88 +5.4 928,586 - IAI47_04430 0.88 +0.0 928,586 - IAI47_04430 0.88 -1.5 928,586 - IAI47_04430 0.88 +0.2 928,586 - IAI47_04430 0.88 -0.8 928,586 - IAI47_04430 0.88 -0.2 928,586 - IAI47_04430 0.88 -0.6 928,586 - IAI47_04430 0.88 -1.4 928,592 - IAI47_04430 0.89 -1.7 928,630 + -1.1 928,630 + -0.6 928,630 + +0.4 928,630 + +0.5 928,631 - -0.6 928,631 - -0.3 928,642 + -2.9 928,653 + -0.1 928,654 - +3.2 928,654 - -0.8 928,665 + -0.8 928,666 - +0.4 928,666 - -1.1 928,666 - -0.2 928,667 + -0.3 928,667 + +0.4 928,668 - -1.7 928,668 - +1.7 928,668 - +0.2 928,668 - -0.1 928,673 + +1.9 928,674 - -1.5 928,674 - -0.1 928,680 + -0.0 928,680 + +1.0 928,681 - +0.3 928,681 - -1.2 928,694 + -0.4 928,694 + +0.3 928,694 + +0.6 928,695 - +1.1 928,695 - +0.8 928,706 + +1.2 928,706 + -0.0 928,725 + -0.1 928,726 - -0.6 928,757 + -1.5 928,757 + -0.2 928,758 - -0.8 928,758 - -2.8 928,768 - -1.1 928,783 - -2.5 928,795 + -0.6 928,795 + +1.3 928,795 + +0.2 928,796 - +0.6 928,796 - -0.5 928,796 - -1.3 928,796 - -0.9 928,796 - -1.7 928,813 + +0.4 928,813 + -2.9 928,813 + -1.1 928,814 - -1.1 928,814 - -0.2 928,814 - -1.0 928,814 - -1.1 928,814 - -1.5 928,817 - -0.3 928,817 - -3.0 928,817 - -1.8 928,817 - 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Or see this region's nucleotide sequence