Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02990 and IAI47_02995 are separated by 95 nucleotides
IAI47_02990: IAI47_02990 - hypothetical protein, at 620,010 to 621,809
_02990
IAI47_02995: IAI47_02995 - tyrosine-type recombinase/integrase, at 621,905 to 622,921
_02995
Position (kb) 620
621
622 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 619.022 kb on - strand at 619.060 kb on + strand at 619.061 kb on - strand at 619.113 kb on + strand at 619.114 kb on - strand at 619.134 kb on + strand at 619.134 kb on + strand at 619.134 kb on + strand at 619.134 kb on + strand at 619.135 kb on - strand at 619.173 kb on - strand at 619.173 kb on - strand at 619.173 kb on - strand at 619.184 kb on + strand at 619.184 kb on + strand at 619.185 kb on - strand at 619.185 kb on - strand at 619.185 kb on - strand at 619.245 kb on - strand at 619.253 kb on + strand at 619.253 kb on + strand at 619.253 kb on + strand at 619.253 kb on + strand at 619.253 kb on + strand at 619.254 kb on - strand at 619.263 kb on + strand at 619.264 kb on - strand at 619.347 kb on - strand at 619.347 kb on - strand at 619.347 kb on - strand at 619.347 kb on - strand at 619.358 kb on + strand at 619.358 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.378 kb on + strand at 619.379 kb on - strand at 619.379 kb on - strand at 619.379 kb on - strand at 619.379 kb on - strand at 619.379 kb on - strand at 619.379 kb on - strand at 619.422 kb on - strand at 619.422 kb on - strand at 619.432 kb on + strand at 619.433 kb on - strand at 619.433 kb on - strand at 619.436 kb on - strand at 619.439 kb on + strand at 619.440 kb on - strand at 619.440 kb on - strand at 619.440 kb on - strand at 619.453 kb on + strand at 619.454 kb on - strand at 619.454 kb on - strand at 619.454 kb on - strand at 619.472 kb on + strand at 619.473 kb on - strand at 619.476 kb on + strand at 619.477 kb on - strand at 619.477 kb on - strand at 619.477 kb on - strand at 619.477 kb on - strand at 619.477 kb on - strand at 619.518 kb on - strand at 619.589 kb on + strand at 619.590 kb on - strand at 619.643 kb on + strand at 619.711 kb on - strand at 619.739 kb on + strand at 619.739 kb on + strand at 619.739 kb on + strand at 619.740 kb on - strand at 619.740 kb on - strand at 619.740 kb on - strand at 619.743 kb on + strand at 619.743 kb on + strand at 619.743 kb on + strand at 619.743 kb on + strand at 619.743 kb on + strand at 619.744 kb on - strand at 619.745 kb on + strand at 619.745 kb on + strand at 619.746 kb on - strand at 619.746 kb on - strand at 619.756 kb on - strand at 619.756 kb on - strand at 619.803 kb on + strand at 619.803 kb on + strand at 619.804 kb on - strand at 619.804 kb on - strand at 619.804 kb on - strand at 619.804 kb on - strand at 619.806 kb on + strand at 619.806 kb on + strand at 619.807 kb on - strand at 619.807 kb on - strand at 619.807 kb on - strand at 619.807 kb on - strand at 619.807 kb on - strand at 619.807 kb on - strand at 619.830 kb on + strand at 619.853 kb on + strand at 619.870 kb on + strand at 619.870 kb on + strand at 619.870 kb on + strand at 619.870 kb on + strand at 619.871 kb on - strand at 619.871 kb on - strand at 619.871 kb on - strand at 619.873 kb on + strand at 619.873 kb on + strand at 619.874 kb on - strand at 619.874 kb on - strand at 619.874 kb on - strand at 619.874 kb on - strand at 619.891 kb on + strand at 619.891 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.942 kb on + strand at 619.943 kb on - strand at 619.943 kb on - strand at 619.943 kb on - strand at 619.943 kb on - strand at 619.943 kb on - strand at 619.963 kb on + strand at 619.963 kb on + strand at 619.963 kb on + strand at 619.964 kb on - strand at 619.964 kb on - strand at 619.964 kb on - strand at 619.964 kb on - strand at 619.966 kb on - strand at 619.966 kb on - strand at 619.981 kb on - strand at 620.007 kb on + strand at 620.008 kb on - strand at 620.008 kb on - strand at 620.016 kb on + strand at 620.016 kb on + strand at 620.016 kb on + strand at 620.016 kb on + strand at 620.113 kb on - strand at 620.118 kb on + strand at 620.220 kb on - strand, within IAI47_02990 at 620.220 kb on - strand, within IAI47_02990 at 620.450 kb on - strand, within IAI47_02990 at 620.469 kb on - strand, within IAI47_02990 at 620.493 kb on + strand, within IAI47_02990 at 620.582 kb on + strand, within IAI47_02990 at 620.637 kb on - strand, within IAI47_02990 at 620.686 kb on - strand, within IAI47_02990 at 620.708 kb on + strand, within IAI47_02990 at 620.709 kb on - strand, within IAI47_02990 at 620.734 kb on + strand, within IAI47_02990 at 620.738 kb on - strand, within IAI47_02990 at 620.778 kb on - strand, within IAI47_02990 at 620.914 kb on + strand, within IAI47_02990 at 620.928 kb on + strand, within IAI47_02990 at 620.936 kb on + strand, within IAI47_02990 at 620.945 kb on + strand, within IAI47_02990 at 620.945 kb on + strand, within IAI47_02990 at 620.964 kb on - strand, within IAI47_02990 at 620.979 kb on + strand, within IAI47_02990 at 620.980 kb on - strand, within IAI47_02990 at 620.980 kb on - strand, within IAI47_02990 at 620.981 kb on + strand, within IAI47_02990 at 620.981 kb on + strand, within IAI47_02990 at 620.982 kb on - strand, within IAI47_02990 at 620.982 kb on - strand, within IAI47_02990 at 620.982 kb on - strand, within IAI47_02990 at 620.986 kb on + strand, within IAI47_02990 at 620.987 kb on - strand, within IAI47_02990 at 621.029 kb on + strand, within IAI47_02990 at 621.030 kb on - strand, within IAI47_02990 at 621.030 kb on - strand, within IAI47_02990 at 621.030 kb on - strand, within IAI47_02990 at 621.030 kb on - strand, within IAI47_02990 at 621.030 kb on - strand, within IAI47_02990 at 621.061 kb on - strand, within IAI47_02990 at 621.145 kb on + strand, within IAI47_02990 at 621.174 kb on + strand, within IAI47_02990 at 621.179 kb on + strand, within IAI47_02990 at 621.195 kb on - strand, within IAI47_02990 at 621.218 kb on + strand, within IAI47_02990 at 621.256 kb on - strand, within IAI47_02990 at 621.257 kb on + strand, within IAI47_02990 at 621.264 kb on + strand, within IAI47_02990 at 621.266 kb on + strand, within IAI47_02990 at 621.269 kb on - strand, within IAI47_02990 at 621.277 kb on - strand, within IAI47_02990 at 621.358 kb on - strand, within IAI47_02990 at 621.555 kb on - strand, within IAI47_02990 at 621.593 kb on + strand, within IAI47_02990 at 621.679 kb on + strand at 621.768 kb on + strand at 621.771 kb on + strand at 621.876 kb on - strand at 621.893 kb on + strand at 621.901 kb on + strand at 621.902 kb on - strand at 621.902 kb on - strand at 621.902 kb on - strand at 621.902 kb on - strand at 621.902 kb on - strand at 621.928 kb on + strand at 621.932 kb on + strand at 621.972 kb on + strand at 621.997 kb on + strand at 621.997 kb on + strand at 622.004 kb on + strand at 622.008 kb on - strand, within IAI47_02995 at 622.008 kb on - strand, within IAI47_02995 at 622.009 kb on + strand, within IAI47_02995 at 622.010 kb on - strand, within IAI47_02995 at 622.010 kb on - strand, within IAI47_02995 at 622.027 kb on + strand, within IAI47_02995 at 622.027 kb on + strand, within IAI47_02995 at 622.030 kb on + strand, within IAI47_02995 at 622.031 kb on - strand, within IAI47_02995 at 622.140 kb on + strand, within IAI47_02995 at 622.140 kb on + strand, within IAI47_02995 at 622.141 kb on - strand, within IAI47_02995 at 622.141 kb on - strand, within IAI47_02995 at 622.141 kb on - strand, within IAI47_02995 at 622.141 kb on - strand, within IAI47_02995 at 622.150 kb on + strand, within IAI47_02995 at 622.194 kb on - strand, within IAI47_02995 at 622.194 kb on - strand, within IAI47_02995 at 622.234 kb on + strand, within IAI47_02995 at 622.245 kb on + strand, within IAI47_02995 at 622.245 kb on + strand, within IAI47_02995 at 622.245 kb on + strand, within IAI47_02995 at 622.245 kb on + strand, within IAI47_02995 at 622.246 kb on - strand, within IAI47_02995 at 622.246 kb on - strand, within IAI47_02995 at 622.348 kb on + strand, within IAI47_02995 at 622.349 kb on - strand, within IAI47_02995 at 622.404 kb on + strand, within IAI47_02995 at 622.404 kb on + strand, within IAI47_02995 at 622.404 kb on + strand, within IAI47_02995 at 622.404 kb on + strand, within IAI47_02995 at 622.430 kb on - strand, within IAI47_02995 at 622.439 kb on + strand, within IAI47_02995 at 622.456 kb on + strand, within IAI47_02995 at 622.456 kb on + strand, within IAI47_02995 at 622.457 kb on - strand, within IAI47_02995 at 622.457 kb on - strand, within IAI47_02995 at 622.509 kb on + strand, within IAI47_02995 at 622.520 kb on + strand, within IAI47_02995 at 622.520 kb on + strand, within IAI47_02995 at 622.520 kb on + strand, within IAI47_02995 at 622.525 kb on + strand, within IAI47_02995 at 622.525 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.540 kb on + strand, within IAI47_02995 at 622.541 kb on - strand, within IAI47_02995 at 622.541 kb on - strand, within IAI47_02995 at 622.541 kb on - strand, within IAI47_02995 at 622.596 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.669 kb on + strand, within IAI47_02995 at 622.670 kb on - strand, within IAI47_02995 at 622.670 kb on - strand, within IAI47_02995 at 622.739 kb on + strand, within IAI47_02995 at 622.750 kb on + strand, within IAI47_02995 at 622.750 kb on + strand, within IAI47_02995 at 622.750 kb on + strand, within IAI47_02995 at 622.750 kb on + strand, within IAI47_02995 at 622.750 kb on + strand, within IAI47_02995 at 622.751 kb on - strand, within IAI47_02995 at 622.751 kb on - strand, within IAI47_02995 at 622.797 kb on - strand, within IAI47_02995 at 622.797 kb on - strand, within IAI47_02995 at 622.807 kb on + strand, within IAI47_02995 at 622.807 kb on + strand, within IAI47_02995 at 622.808 kb on - strand, within IAI47_02995 at 622.808 kb on - strand, within IAI47_02995
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 619,022 - +1.9 619,060 + +0.0 619,061 - +1.1 619,113 + +0.3 619,114 - +1.2 619,134 + -0.1 619,134 + -0.7 619,134 + -1.2 619,134 + -1.8 619,135 - +0.2 619,173 - -1.1 619,173 - -0.0 619,173 - -0.6 619,184 + +0.3 619,184 + +1.4 619,185 - +0.3 619,185 - -0.8 619,185 - -0.9 619,245 - +1.5 619,253 + +0.5 619,253 + -0.3 619,253 + -1.0 619,253 + -0.3 619,253 + +0.4 619,254 - +0.2 619,263 + -1.9 619,264 - -1.3 619,347 - -2.0 619,347 - -0.8 619,347 - +0.7 619,347 - +1.6 619,358 + -0.1 619,358 + -2.7 619,378 + -0.1 619,378 + -0.9 619,378 + +0.1 619,378 + -0.2 619,378 + +2.4 619,378 + -2.0 619,378 + -1.9 619,378 + -0.9 619,378 + -1.2 619,378 + +0.5 619,378 + -1.1 619,378 + +0.4 619,378 + +0.2 619,379 - -1.2 619,379 - -0.6 619,379 - +0.3 619,379 - +0.3 619,379 - -0.5 619,379 - -0.4 619,422 - -1.3 619,422 - +0.7 619,432 + -0.7 619,433 - -0.9 619,433 - -1.1 619,436 - +0.3 619,439 + -1.9 619,440 - -0.3 619,440 - -1.2 619,440 - +0.5 619,453 + -2.2 619,454 - +0.1 619,454 - +0.0 619,454 - -0.6 619,472 + +0.1 619,473 - +0.9 619,476 + -0.2 619,477 - -1.0 619,477 - -1.8 619,477 - -0.5 619,477 - -0.3 619,477 - -1.2 619,518 - -1.6 619,589 + -1.4 619,590 - +0.5 619,643 + -0.2 619,711 - -1.2 619,739 + +0.7 619,739 + +0.2 619,739 + -2.2 619,740 - +1.8 619,740 - +0.8 619,740 - -0.0 619,743 + -0.2 619,743 + -0.1 619,743 + -0.2 619,743 + -0.3 619,743 + -0.6 619,744 - -0.4 619,745 + +2.5 619,745 + -0.6 619,746 - +0.6 619,746 - -0.1 619,756 - -2.7 619,756 - -1.3 619,803 + +0.5 619,803 + +0.4 619,804 - -1.4 619,804 - -1.0 619,804 - -1.2 619,804 - -0.3 619,806 + -2.0 619,806 + +0.1 619,807 - +0.3 619,807 - +1.2 619,807 - -0.3 619,807 - +2.0 619,807 - +0.3 619,807 - -1.0 619,830 + +1.7 619,853 + +0.1 619,870 + +0.7 619,870 + -1.7 619,870 + +0.9 619,870 + +0.8 619,871 - -0.5 619,871 - -0.6 619,871 - +0.3 619,873 + +0.5 619,873 + +1.4 619,874 - -1.7 619,874 - -1.1 619,874 - +0.1 619,874 - +2.4 619,891 + -1.3 619,891 + +1.5 619,893 + -0.2 619,893 + -2.3 619,893 + +0.3 619,893 + +0.2 619,893 + -0.8 619,894 - -0.9 619,894 - -0.4 619,894 - +1.4 619,894 - +0.1 619,894 - -1.8 619,894 - -0.5 619,894 - +0.4 619,894 - -0.3 619,894 - -0.3 619,894 - -1.5 619,942 + -0.3 619,943 - -0.6 619,943 - -0.3 619,943 - -0.7 619,943 - -0.2 619,943 - -1.3 619,963 + +2.5 619,963 + +0.3 619,963 + -0.3 619,964 - -0.6 619,964 - +0.2 619,964 - -0.9 619,964 - -1.6 619,966 - -0.3 619,966 - +0.3 619,981 - -0.8 620,007 + -1.0 620,008 - -1.1 620,008 - -2.2 620,016 + -1.6 620,016 + -1.2 620,016 + -1.7 620,016 + -0.9 620,113 - +0.7 620,118 + -0.4 620,220 - IAI47_02990 0.12 -0.0 620,220 - IAI47_02990 0.12 +0.2 620,450 - IAI47_02990 0.24 +0.3 620,469 - IAI47_02990 0.26 -0.6 620,493 + IAI47_02990 0.27 -1.1 620,582 + IAI47_02990 0.32 -0.4 620,637 - IAI47_02990 0.35 -0.1 620,686 - IAI47_02990 0.38 -0.5 620,708 + IAI47_02990 0.39 +0.9 620,709 - IAI47_02990 0.39 -0.6 620,734 + IAI47_02990 0.40 +0.3 620,738 - IAI47_02990 0.40 -1.3 620,778 - IAI47_02990 0.43 -2.0 620,914 + IAI47_02990 0.50 -0.7 620,928 + IAI47_02990 0.51 +0.7 620,936 + IAI47_02990 0.51 +0.9 620,945 + IAI47_02990 0.52 -1.0 620,945 + IAI47_02990 0.52 -1.9 620,964 - IAI47_02990 0.53 -2.1 620,979 + IAI47_02990 0.54 -0.5 620,980 - IAI47_02990 0.54 +0.2 620,980 - IAI47_02990 0.54 -1.3 620,981 + IAI47_02990 0.54 -0.7 620,981 + IAI47_02990 0.54 -0.6 620,982 - IAI47_02990 0.54 +0.2 620,982 - IAI47_02990 0.54 -0.7 620,982 - IAI47_02990 0.54 -0.7 620,986 + IAI47_02990 0.54 -1.0 620,987 - IAI47_02990 0.54 -0.7 621,029 + IAI47_02990 0.57 -1.3 621,030 - IAI47_02990 0.57 +0.3 621,030 - IAI47_02990 0.57 -0.4 621,030 - IAI47_02990 0.57 -1.5 621,030 - IAI47_02990 0.57 +0.7 621,030 - IAI47_02990 0.57 +0.5 621,061 - IAI47_02990 0.58 -0.4 621,145 + IAI47_02990 0.63 +1.5 621,174 + IAI47_02990 0.65 -1.2 621,179 + IAI47_02990 0.65 -1.7 621,195 - IAI47_02990 0.66 -1.3 621,218 + IAI47_02990 0.67 -0.5 621,256 - IAI47_02990 0.69 -0.3 621,257 + IAI47_02990 0.69 -1.4 621,264 + IAI47_02990 0.70 -0.3 621,266 + IAI47_02990 0.70 -2.7 621,269 - IAI47_02990 0.70 -0.8 621,277 - IAI47_02990 0.70 -1.3 621,358 - IAI47_02990 0.75 -0.8 621,555 - IAI47_02990 0.86 -0.0 621,593 + IAI47_02990 0.88 -0.6 621,679 + -1.4 621,768 + -0.1 621,771 + -0.8 621,876 - -0.8 621,893 + -0.6 621,901 + +0.2 621,902 - -1.3 621,902 - +1.2 621,902 - +0.6 621,902 - +0.6 621,902 - +0.7 621,928 + -0.5 621,932 + +0.9 621,972 + -1.5 621,997 + -0.3 621,997 + +0.2 622,004 + -1.1 622,008 - IAI47_02995 0.10 +1.1 622,008 - IAI47_02995 0.10 -1.1 622,009 + IAI47_02995 0.10 -1.0 622,010 - IAI47_02995 0.10 -0.1 622,010 - IAI47_02995 0.10 +0.3 622,027 + IAI47_02995 0.12 +0.2 622,027 + IAI47_02995 0.12 +0.2 622,030 + IAI47_02995 0.12 +0.6 622,031 - IAI47_02995 0.12 -1.2 622,140 + IAI47_02995 0.23 -0.5 622,140 + IAI47_02995 0.23 -2.7 622,141 - IAI47_02995 0.23 +0.3 622,141 - IAI47_02995 0.23 -2.0 622,141 - IAI47_02995 0.23 +0.5 622,141 - IAI47_02995 0.23 -1.0 622,150 + IAI47_02995 0.24 +1.6 622,194 - IAI47_02995 0.28 -0.3 622,194 - IAI47_02995 0.28 +0.1 622,234 + IAI47_02995 0.32 +0.3 622,245 + IAI47_02995 0.33 +0.1 622,245 + IAI47_02995 0.33 -1.6 622,245 + IAI47_02995 0.33 -2.3 622,245 + IAI47_02995 0.33 -0.9 622,246 - IAI47_02995 0.34 -1.6 622,246 - IAI47_02995 0.34 -0.3 622,348 + IAI47_02995 0.44 -0.6 622,349 - IAI47_02995 0.44 +3.7 622,404 + IAI47_02995 0.49 -0.9 622,404 + IAI47_02995 0.49 +0.3 622,404 + IAI47_02995 0.49 -2.0 622,404 + IAI47_02995 0.49 +0.7 622,430 - IAI47_02995 0.52 +0.8 622,439 + IAI47_02995 0.53 +1.1 622,456 + IAI47_02995 0.54 +2.9 622,456 + IAI47_02995 0.54 -0.4 622,457 - IAI47_02995 0.54 -1.2 622,457 - IAI47_02995 0.54 +0.3 622,509 + IAI47_02995 0.59 +0.3 622,520 + IAI47_02995 0.60 -1.1 622,520 + IAI47_02995 0.60 +1.2 622,520 + IAI47_02995 0.60 +0.0 622,525 + IAI47_02995 0.61 -1.2 622,525 + IAI47_02995 0.61 -0.2 622,540 + IAI47_02995 0.62 -0.4 622,540 + IAI47_02995 0.62 -0.1 622,540 + IAI47_02995 0.62 +0.1 622,540 + IAI47_02995 0.62 -0.4 622,540 + IAI47_02995 0.62 -1.0 622,540 + IAI47_02995 0.62 -1.3 622,540 + IAI47_02995 0.62 -0.8 622,541 - IAI47_02995 0.63 -0.5 622,541 - IAI47_02995 0.63 -1.7 622,541 - IAI47_02995 0.63 -1.7 622,596 + IAI47_02995 0.68 -0.5 622,669 + IAI47_02995 0.75 +0.4 622,669 + IAI47_02995 0.75 +2.5 622,669 + IAI47_02995 0.75 -0.2 622,669 + IAI47_02995 0.75 -0.7 622,669 + IAI47_02995 0.75 -0.2 622,669 + IAI47_02995 0.75 -0.9 622,669 + IAI47_02995 0.75 -0.6 622,670 - IAI47_02995 0.75 +0.0 622,670 - IAI47_02995 0.75 -0.5 622,739 + IAI47_02995 0.82 +0.4 622,750 + IAI47_02995 0.83 -1.8 622,750 + IAI47_02995 0.83 -0.9 622,750 + IAI47_02995 0.83 -0.6 622,750 + IAI47_02995 0.83 -0.9 622,750 + IAI47_02995 0.83 -0.5 622,751 - IAI47_02995 0.83 +1.4 622,751 - IAI47_02995 0.83 +0.1 622,797 - IAI47_02995 0.88 -0.2 622,797 - IAI47_02995 0.88 -0.6 622,807 + IAI47_02995 0.89 +0.6 622,807 + IAI47_02995 0.89 +0.0 622,808 - IAI47_02995 0.89 -0.7 622,808 - IAI47_02995 0.89 -1.3
Or see this region's nucleotide sequence