Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS15560 and HSERO_RS15565 are separated by 49 nucleotides HSERO_RS15565 and HSERO_RS15570 overlap by 1 nucleotides HSERO_RS15570 and HSERO_RS15575 are separated by 37 nucleotides HSERO_RS15575 and HSERO_RS15580 are separated by 7 nucleotides
HSERO_RS15560: HSERO_RS15560 - phosphoadenosine phosphosulfate reductase, at 3,556,375 to 3,557,106
_RS15560
HSERO_RS15565: HSERO_RS15565 - sulfate adenylyltransferase subunit 2, at 3,557,156 to 3,558,091
_RS15565
HSERO_RS15570: HSERO_RS15570 - sulfate adenylyltransferase, at 3,558,091 to 3,559,422
_RS15570
HSERO_RS15575: HSERO_RS15575 - uroporphyrin-III C-methyltransferase, at 3,559,460 to 3,560,221
_RS15575
HSERO_RS15580: HSERO_RS15580 - tRNA-binding protein, at 3,560,229 to 3,560,600
_RS15580
Position (kb) 3558
3559
3560 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3557.306 kb on + strand, within HSERO_RS15565 at 3557.600 kb on + strand, within HSERO_RS15565 at 3557.728 kb on + strand, within HSERO_RS15565 at 3557.865 kb on + strand, within HSERO_RS15565 at 3558.513 kb on + strand, within HSERO_RS15570 at 3558.829 kb on + strand, within HSERO_RS15570 at 3559.103 kb on - strand, within HSERO_RS15570 at 3559.195 kb on - strand, within HSERO_RS15570 at 3559.236 kb on - strand, within HSERO_RS15570 at 3559.288 kb on + strand, within HSERO_RS15570 at 3559.464 kb on - strand at 3559.581 kb on + strand, within HSERO_RS15575 at 3560.235 kb on - strand at 3560.325 kb on + strand, within HSERO_RS15580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 3,557,306 + HSERO_RS15565 0.16 -4.8 3,557,600 + HSERO_RS15565 0.47 -3.2 3,557,728 + HSERO_RS15565 0.61 -0.1 3,557,865 + HSERO_RS15565 0.76 -4.3 3,558,513 + HSERO_RS15570 0.32 -3.6 3,558,829 + HSERO_RS15570 0.55 -3.1 3,559,103 - HSERO_RS15570 0.76 -5.1 3,559,195 - HSERO_RS15570 0.83 -3.4 3,559,236 - HSERO_RS15570 0.86 -3.0 3,559,288 + HSERO_RS15570 0.90 -4.6 3,559,464 - -1.1 3,559,581 + HSERO_RS15575 0.16 -2.0 3,560,235 - -0.3 3,560,325 + HSERO_RS15580 0.26 -0.7
Or see this region's nucleotide sequence