Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03885 and HSERO_RS03890 are separated by 63 nucleotides HSERO_RS03890 and HSERO_RS03895 are separated by 228 nucleotides
HSERO_RS03885: HSERO_RS03885 - hypothetical protein, at 856,539 to 858,266
_RS03885
HSERO_RS03890: HSERO_RS03890 - hypothetical protein, at 858,330 to 858,926
_RS03890
HSERO_RS03895: HSERO_RS03895 - SAM-dependent methyltransferase, at 859,155 to 860,726
_RS03895
Position (kb) 858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 857.574 kb on - strand, within HSERO_RS03885 at 857.603 kb on - strand, within HSERO_RS03885 at 857.653 kb on + strand, within HSERO_RS03885 at 857.655 kb on + strand, within HSERO_RS03885 at 857.741 kb on + strand, within HSERO_RS03885 at 857.758 kb on + strand, within HSERO_RS03885 at 857.873 kb on - strand, within HSERO_RS03885 at 858.066 kb on + strand, within HSERO_RS03885 at 858.255 kb on + strand at 858.269 kb on - strand at 858.337 kb on + strand at 858.589 kb on + strand, within HSERO_RS03890 at 858.831 kb on - strand, within HSERO_RS03890 at 858.859 kb on + strand, within HSERO_RS03890 at 859.158 kb on + strand at 859.175 kb on + strand at 859.263 kb on - strand at 859.263 kb on - strand at 859.299 kb on - strand at 859.322 kb on - strand, within HSERO_RS03895 at 859.322 kb on - strand, within HSERO_RS03895 at 859.391 kb on - strand, within HSERO_RS03895 at 859.398 kb on + strand, within HSERO_RS03895 at 859.403 kb on + strand, within HSERO_RS03895 at 859.403 kb on + strand, within HSERO_RS03895 at 859.523 kb on - strand, within HSERO_RS03895 at 859.526 kb on - strand, within HSERO_RS03895 at 859.576 kb on + strand, within HSERO_RS03895 at 859.595 kb on + strand, within HSERO_RS03895 at 859.847 kb on + strand, within HSERO_RS03895 at 859.895 kb on + strand, within HSERO_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 857,574 - HSERO_RS03885 0.60 -0.6 857,603 - HSERO_RS03885 0.62 -0.5 857,653 + HSERO_RS03885 0.64 +0.1 857,655 + HSERO_RS03885 0.65 -0.9 857,741 + HSERO_RS03885 0.70 -1.1 857,758 + HSERO_RS03885 0.71 -1.7 857,873 - HSERO_RS03885 0.77 -0.2 858,066 + HSERO_RS03885 0.88 -0.7 858,255 + -0.5 858,269 - -0.5 858,337 + -2.1 858,589 + HSERO_RS03890 0.43 -2.2 858,831 - HSERO_RS03890 0.84 -1.4 858,859 + HSERO_RS03890 0.89 -0.5 859,158 + -0.2 859,175 + -0.7 859,263 - -1.6 859,263 - -2.9 859,299 - +1.1 859,322 - HSERO_RS03895 0.11 -0.3 859,322 - HSERO_RS03895 0.11 -0.9 859,391 - HSERO_RS03895 0.15 -1.5 859,398 + HSERO_RS03895 0.15 +0.7 859,403 + HSERO_RS03895 0.16 -1.2 859,403 + HSERO_RS03895 0.16 -1.7 859,523 - HSERO_RS03895 0.23 -0.9 859,526 - HSERO_RS03895 0.24 -1.9 859,576 + HSERO_RS03895 0.27 -1.5 859,595 + HSERO_RS03895 0.28 -1.1 859,847 + HSERO_RS03895 0.44 -0.5 859,895 + HSERO_RS03895 0.47 -0.7
Or see this region's nucleotide sequence