Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03205 and HSERO_RS03210 are separated by 10 nucleotides HSERO_RS03210 and HSERO_RS03215 are separated by 20 nucleotides HSERO_RS03215 and HSERO_RS03220 overlap by 11 nucleotides HSERO_RS03220 and HSERO_RS03225 are separated by 1 nucleotides
HSERO_RS03205: HSERO_RS03205 - hypothetical protein, at 703,613 to 706,114
_RS03205
HSERO_RS03210: HSERO_RS03210 - transglutaminase, at 706,125 to 707,060
_RS03210
HSERO_RS03215: HSERO_RS03215 - sodium:solute symporter, at 707,081 to 709,132
_RS03215
HSERO_RS03220: HSERO_RS03220 - sodium:solute symporter, at 709,122 to 709,406
_RS03220
HSERO_RS03225: HSERO_RS03225 - histidine kinase, at 709,408 to 710,982
_RS03225
Position (kb) 707
708
709
710 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 706.108 kb on + strand at 706.125 kb on - strand at 706.139 kb on + strand at 706.203 kb on + strand at 706.428 kb on - strand, within HSERO_RS03210 at 706.431 kb on + strand, within HSERO_RS03210 at 706.583 kb on - strand, within HSERO_RS03210 at 706.687 kb on + strand, within HSERO_RS03210 at 706.762 kb on + strand, within HSERO_RS03210 at 706.843 kb on + strand, within HSERO_RS03210 at 706.913 kb on - strand, within HSERO_RS03210 at 707.115 kb on - strand at 707.151 kb on - strand at 707.155 kb on - strand at 707.486 kb on + strand, within HSERO_RS03215 at 707.519 kb on + strand, within HSERO_RS03215 at 707.550 kb on - strand, within HSERO_RS03215 at 707.571 kb on + strand, within HSERO_RS03215 at 707.711 kb on + strand, within HSERO_RS03215 at 707.883 kb on + strand, within HSERO_RS03215 at 708.140 kb on - strand, within HSERO_RS03215 at 708.499 kb on + strand, within HSERO_RS03215 at 708.514 kb on + strand, within HSERO_RS03215 at 708.576 kb on - strand, within HSERO_RS03215 at 708.578 kb on + strand, within HSERO_RS03215 at 708.591 kb on + strand, within HSERO_RS03215 at 708.591 kb on + strand, within HSERO_RS03215 at 708.599 kb on - strand, within HSERO_RS03215 at 708.599 kb on - strand, within HSERO_RS03215 at 708.631 kb on - strand, within HSERO_RS03215 at 708.693 kb on - strand, within HSERO_RS03215 at 708.722 kb on + strand, within HSERO_RS03215 at 708.750 kb on - strand, within HSERO_RS03215 at 709.493 kb on - strand at 709.742 kb on + strand, within HSERO_RS03225 at 709.742 kb on + strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.750 kb on - strand, within HSERO_RS03225 at 709.862 kb on - strand, within HSERO_RS03225 at 709.871 kb on + strand, within HSERO_RS03225 at 709.876 kb on + strand, within HSERO_RS03225 at 709.876 kb on + strand, within HSERO_RS03225 at 709.884 kb on - strand, within HSERO_RS03225 at 709.886 kb on + strand, within HSERO_RS03225 at 709.969 kb on - strand, within HSERO_RS03225 at 710.016 kb on + strand, within HSERO_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 706,108 + -0.3 706,125 - +0.4 706,139 + +0.1 706,203 + -0.2 706,428 - HSERO_RS03210 0.32 -1.1 706,431 + HSERO_RS03210 0.33 -0.3 706,583 - HSERO_RS03210 0.49 -0.5 706,687 + HSERO_RS03210 0.60 -0.1 706,762 + HSERO_RS03210 0.68 +0.1 706,843 + HSERO_RS03210 0.77 +0.2 706,913 - HSERO_RS03210 0.84 +0.3 707,115 - -0.9 707,151 - -2.5 707,155 - -2.2 707,486 + HSERO_RS03215 0.20 -2.4 707,519 + HSERO_RS03215 0.21 -2.7 707,550 - HSERO_RS03215 0.23 -1.5 707,571 + HSERO_RS03215 0.24 -2.3 707,711 + HSERO_RS03215 0.31 -1.3 707,883 + HSERO_RS03215 0.39 -3.6 708,140 - HSERO_RS03215 0.52 -2.3 708,499 + HSERO_RS03215 0.69 -2.3 708,514 + HSERO_RS03215 0.70 -1.9 708,576 - HSERO_RS03215 0.73 -2.4 708,578 + HSERO_RS03215 0.73 -3.1 708,591 + HSERO_RS03215 0.74 +0.1 708,591 + HSERO_RS03215 0.74 -1.6 708,599 - HSERO_RS03215 0.74 -2.6 708,599 - HSERO_RS03215 0.74 -2.4 708,631 - HSERO_RS03215 0.76 -1.0 708,693 - HSERO_RS03215 0.79 -2.1 708,722 + HSERO_RS03215 0.80 -3.0 708,750 - HSERO_RS03215 0.81 -1.9 709,493 - -3.0 709,742 + HSERO_RS03225 0.21 -3.4 709,742 + HSERO_RS03225 0.21 -2.8 709,750 - HSERO_RS03225 0.22 -3.6 709,750 - HSERO_RS03225 0.22 -3.0 709,750 - HSERO_RS03225 0.22 -2.9 709,862 - HSERO_RS03225 0.29 -3.2 709,871 + HSERO_RS03225 0.29 -3.9 709,876 + HSERO_RS03225 0.30 -3.8 709,876 + HSERO_RS03225 0.30 -2.7 709,884 - HSERO_RS03225 0.30 -2.7 709,886 + HSERO_RS03225 0.30 -1.9 709,969 - HSERO_RS03225 0.36 -2.8 710,016 + HSERO_RS03225 0.39 -3.7
Or see this region's nucleotide sequence