Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02330 and HSERO_RS02335 are separated by 175 nucleotides HSERO_RS02335 and HSERO_RS02340 overlap by 1 nucleotides HSERO_RS02340 and HSERO_RS02345 are separated by 114 nucleotides HSERO_RS02345 and HSERO_RS02350 overlap by 71 nucleotides
HSERO_RS02330: HSERO_RS02330 - aspartate carbamoyltransferase, at 508,747 to 509,706
_RS02330
HSERO_RS02335: HSERO_RS02335 - excinuclease ABC subunit C, at 509,882 to 510,166
_RS02335
HSERO_RS02340: HSERO_RS02340 - dihydroorotase, at 510,166 to 511,452
_RS02340
HSERO_RS02345: HSERO_RS02345 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 511,567 to 512,367
_RS02345
HSERO_RS02350: HSERO_RS02350 - diadenosine tetraphosphatase, at 512,297 to 513,121
_RS02350
Position (kb) 510
511
512 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 509.222 kb on - strand at 509.341 kb on - strand, within HSERO_RS02330 at 509.419 kb on - strand, within HSERO_RS02330 at 509.547 kb on + strand, within HSERO_RS02330 at 509.582 kb on - strand, within HSERO_RS02330 at 509.688 kb on - strand at 509.787 kb on - strand at 509.798 kb on + strand at 509.806 kb on - strand at 509.910 kb on + strand at 509.923 kb on + strand, within HSERO_RS02335 at 509.923 kb on + strand, within HSERO_RS02335 at 509.942 kb on - strand, within HSERO_RS02335 at 509.997 kb on - strand, within HSERO_RS02335 at 510.308 kb on + strand, within HSERO_RS02340 at 510.375 kb on + strand, within HSERO_RS02340 at 510.412 kb on + strand, within HSERO_RS02340 at 510.525 kb on + strand, within HSERO_RS02340 at 510.533 kb on - strand, within HSERO_RS02340 at 510.567 kb on + strand, within HSERO_RS02340 at 510.576 kb on - strand, within HSERO_RS02340 at 510.576 kb on - strand, within HSERO_RS02340 at 510.645 kb on - strand, within HSERO_RS02340 at 510.726 kb on - strand, within HSERO_RS02340 at 510.800 kb on + strand, within HSERO_RS02340 at 510.808 kb on - strand, within HSERO_RS02340 at 510.900 kb on + strand, within HSERO_RS02340 at 510.905 kb on + strand, within HSERO_RS02340 at 510.908 kb on + strand, within HSERO_RS02340 at 510.955 kb on - strand, within HSERO_RS02340 at 511.076 kb on + strand, within HSERO_RS02340 at 511.081 kb on + strand, within HSERO_RS02340 at 511.084 kb on - strand, within HSERO_RS02340 at 511.129 kb on + strand, within HSERO_RS02340 at 511.216 kb on - strand, within HSERO_RS02340 at 511.218 kb on + strand, within HSERO_RS02340 at 511.229 kb on + strand, within HSERO_RS02340 at 511.272 kb on - strand, within HSERO_RS02340 at 511.347 kb on - strand at 511.605 kb on + strand at 511.646 kb on + strand at 511.740 kb on - strand, within HSERO_RS02345 at 511.925 kb on - strand, within HSERO_RS02345 at 511.996 kb on + strand, within HSERO_RS02345 at 512.062 kb on + strand, within HSERO_RS02345 at 512.070 kb on - strand, within HSERO_RS02345 at 512.070 kb on - strand, within HSERO_RS02345 at 512.075 kb on - strand, within HSERO_RS02345 at 512.077 kb on - strand, within HSERO_RS02345 at 512.173 kb on + strand, within HSERO_RS02345 at 512.208 kb on + strand, within HSERO_RS02345 at 512.216 kb on - strand, within HSERO_RS02345 at 512.361 kb on + strand at 512.369 kb on - strand at 512.445 kb on + strand, within HSERO_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 509,222 - -1.9 509,341 - HSERO_RS02330 0.62 -5.7 509,419 - HSERO_RS02330 0.70 -4.4 509,547 + HSERO_RS02330 0.83 -4.2 509,582 - HSERO_RS02330 0.87 -3.9 509,688 - -5.9 509,787 - -2.2 509,798 + +0.9 509,806 - -0.2 509,910 + +0.2 509,923 + HSERO_RS02335 0.14 +0.1 509,923 + HSERO_RS02335 0.14 +0.1 509,942 - HSERO_RS02335 0.21 -0.2 509,997 - HSERO_RS02335 0.40 +0.4 510,308 + HSERO_RS02340 0.11 -3.9 510,375 + HSERO_RS02340 0.16 -5.5 510,412 + HSERO_RS02340 0.19 -5.3 510,525 + HSERO_RS02340 0.28 -2.9 510,533 - HSERO_RS02340 0.29 -4.9 510,567 + HSERO_RS02340 0.31 -5.2 510,576 - HSERO_RS02340 0.32 -3.3 510,576 - HSERO_RS02340 0.32 -4.2 510,645 - HSERO_RS02340 0.37 -4.6 510,726 - HSERO_RS02340 0.44 -5.2 510,800 + HSERO_RS02340 0.49 -3.6 510,808 - HSERO_RS02340 0.50 -5.6 510,900 + HSERO_RS02340 0.57 -3.8 510,905 + HSERO_RS02340 0.57 -5.1 510,908 + HSERO_RS02340 0.58 -4.5 510,955 - HSERO_RS02340 0.61 -5.5 511,076 + HSERO_RS02340 0.71 -4.8 511,081 + HSERO_RS02340 0.71 -4.4 511,084 - HSERO_RS02340 0.71 -4.3 511,129 + HSERO_RS02340 0.75 -4.4 511,216 - HSERO_RS02340 0.82 -3.7 511,218 + HSERO_RS02340 0.82 -4.2 511,229 + HSERO_RS02340 0.83 -5.9 511,272 - HSERO_RS02340 0.86 -3.4 511,347 - -5.8 511,605 + +0.3 511,646 + -0.2 511,740 - HSERO_RS02345 0.22 +0.3 511,925 - HSERO_RS02345 0.45 +0.2 511,996 + HSERO_RS02345 0.54 +0.5 512,062 + HSERO_RS02345 0.62 +0.1 512,070 - HSERO_RS02345 0.63 -0.3 512,070 - HSERO_RS02345 0.63 +0.1 512,075 - HSERO_RS02345 0.63 -1.0 512,077 - HSERO_RS02345 0.64 +0.8 512,173 + HSERO_RS02345 0.76 -0.1 512,208 + HSERO_RS02345 0.80 +0.4 512,216 - HSERO_RS02345 0.81 +0.4 512,361 + -0.3 512,369 - +0.8 512,445 + HSERO_RS02350 0.18 +0.1
Or see this region's nucleotide sequence