Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00755

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00750 and HSERO_RS00755 are separated by 26 nucleotidesHSERO_RS00755 and HSERO_RS00760 are separated by 291 nucleotides HSERO_RS00750: HSERO_RS00750 - RNA polymerase subunit sigma-24, at 156,854 to 157,828 _RS00750 HSERO_RS00755: HSERO_RS00755 - delta-aminolevulinic acid dehydratase, at 157,855 to 158,874 _RS00755 HSERO_RS00760: HSERO_RS00760 - GTP-binding protein EngB, at 159,166 to 159,906 _RS00760 Position (kb) 157 158 159Strain fitness (log2 ratio) -1 0 1at 157.234 kb on - strand, within HSERO_RS00750at 157.261 kb on + strand, within HSERO_RS00750at 157.271 kb on + strand, within HSERO_RS00750at 157.418 kb on + strand, within HSERO_RS00750at 157.425 kb on + strand, within HSERO_RS00750at 157.428 kb on - strand, within HSERO_RS00750at 157.433 kb on - strand, within HSERO_RS00750at 157.542 kb on + strand, within HSERO_RS00750at 157.556 kb on - strand, within HSERO_RS00750at 157.585 kb on + strand, within HSERO_RS00750at 157.585 kb on + strand, within HSERO_RS00750at 157.686 kb on + strand, within HSERO_RS00750at 157.831 kb on + strandat 157.852 kb on + strandat 159.057 kb on - strandat 159.175 kb on - strandat 159.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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157,234 - HSERO_RS00750 0.39 +0.3
157,261 + HSERO_RS00750 0.42 -0.2
157,271 + HSERO_RS00750 0.43 -0.5
157,418 + HSERO_RS00750 0.58 +0.6
157,425 + HSERO_RS00750 0.59 +0.8
157,428 - HSERO_RS00750 0.59 +0.7
157,433 - HSERO_RS00750 0.59 -1.2
157,542 + HSERO_RS00750 0.71 -0.2
157,556 - HSERO_RS00750 0.72 -0.0
157,585 + HSERO_RS00750 0.75 -0.5
157,585 + HSERO_RS00750 0.75 -0.4
157,686 + HSERO_RS00750 0.85 +0.2
157,831 + -0.2
157,852 + -0.0
159,057 - +0.0
159,175 - -0.0
159,177 - +0.2

Or see this region's nucleotide sequence