Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02189

Experiment: PYE 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02187 and CCNA_02188 overlap by 4 nucleotidesCCNA_02188 and CCNA_02189 are separated by 7 nucleotidesCCNA_02189 and CCNA_02190 are separated by 78 nucleotides CCNA_02187: CCNA_02187 - adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB, at 2,339,090 to 2,339,578 _02187 CCNA_02188: CCNA_02188 - PaaI-family thioesterase, at 2,339,575 to 2,340,048 _02188 CCNA_02189: CCNA_02189 - peptidase, C13 family, at 2,340,056 to 2,340,829 _02189 CCNA_02190: CCNA_02190 - penicillin-binding protein, at 2,340,908 to 2,343,046 _02190 Position (kb) 2340 2341Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2339.088 kb on + strandat 2339.092 kb on + strandat 2339.138 kb on + strandat 2339.218 kb on + strand, within CCNA_02187at 2339.229 kb on - strand, within CCNA_02187at 2339.312 kb on + strand, within CCNA_02187at 2339.312 kb on + strand, within CCNA_02187at 2339.320 kb on - strand, within CCNA_02187at 2339.357 kb on + strand, within CCNA_02187at 2339.366 kb on - strand, within CCNA_02187at 2339.377 kb on + strand, within CCNA_02187at 2339.377 kb on + strand, within CCNA_02187at 2339.377 kb on + strand, within CCNA_02187at 2339.395 kb on + strand, within CCNA_02187at 2339.395 kb on + strand, within CCNA_02187at 2339.395 kb on + strand, within CCNA_02187at 2339.395 kb on + strand, within CCNA_02187at 2339.395 kb on + strand, within CCNA_02187at 2339.403 kb on - strand, within CCNA_02187at 2339.403 kb on - strand, within CCNA_02187at 2339.403 kb on - strandat 2339.475 kb on - strand, within CCNA_02187at 2339.503 kb on + strand, within CCNA_02187at 2339.511 kb on - strand, within CCNA_02187at 2339.553 kb on + strandat 2339.588 kb on + strandat 2339.641 kb on - strand, within CCNA_02188at 2339.678 kb on + strand, within CCNA_02188at 2339.678 kb on + strand, within CCNA_02188at 2339.686 kb on - strand, within CCNA_02188at 2339.726 kb on + strand, within CCNA_02188at 2339.743 kb on + strand, within CCNA_02188at 2339.746 kb on - strand, within CCNA_02188at 2339.764 kb on + strand, within CCNA_02188at 2339.764 kb on + strand, within CCNA_02188at 2339.777 kb on - strand, within CCNA_02188at 2339.780 kb on + strand, within CCNA_02188at 2339.784 kb on + strand, within CCNA_02188at 2339.797 kb on - strand, within CCNA_02188at 2339.805 kb on + strand, within CCNA_02188at 2339.810 kb on + strand, within CCNA_02188at 2339.831 kb on + strand, within CCNA_02188at 2339.851 kb on + strand, within CCNA_02188at 2339.912 kb on + strand, within CCNA_02188at 2339.920 kb on - strand, within CCNA_02188at 2339.948 kb on + strand, within CCNA_02188at 2339.956 kb on - strand, within CCNA_02188at 2339.975 kb on - strand, within CCNA_02188at 2339.997 kb on + strand, within CCNA_02188at 2340.050 kb on - strandat 2340.179 kb on + strand, within CCNA_02189at 2340.181 kb on + strand, within CCNA_02189at 2340.189 kb on - strand, within CCNA_02189at 2340.197 kb on - strand, within CCNA_02189at 2340.208 kb on - strand, within CCNA_02189at 2340.215 kb on + strand, within CCNA_02189at 2340.232 kb on + strand, within CCNA_02189at 2340.248 kb on + strand, within CCNA_02189at 2340.249 kb on + strand, within CCNA_02189at 2340.257 kb on - strand, within CCNA_02189at 2340.271 kb on + strand, within CCNA_02189at 2340.399 kb on + strand, within CCNA_02189at 2340.417 kb on + strand, within CCNA_02189at 2340.490 kb on + strand, within CCNA_02189at 2340.498 kb on - strand, within CCNA_02189at 2340.549 kb on + strand, within CCNA_02189at 2340.558 kb on + strand, within CCNA_02189at 2340.600 kb on + strand, within CCNA_02189at 2340.689 kb on + strand, within CCNA_02189at 2340.692 kb on + strand, within CCNA_02189at 2340.697 kb on + strand, within CCNA_02189at 2340.697 kb on + strand, within CCNA_02189at 2340.705 kb on - strand, within CCNA_02189at 2340.705 kb on - strand, within CCNA_02189at 2340.722 kb on - strand, within CCNA_02189at 2340.722 kb on - strand, within CCNA_02189at 2340.754 kb on + strandat 2340.754 kb on + strandat 2340.762 kb on - strandat 2340.762 kb on - strandat 2340.762 kb on - strandat 2340.762 kb on - strandat 2340.765 kb on + strandat 2340.765 kb on + strandat 2340.765 kb on + strandat 2340.765 kb on + strandat 2340.765 kb on + strandat 2340.765 kb on + strandat 2340.773 kb on - strandat 2340.773 kb on - strandat 2340.773 kb on - strandat 2340.773 kb on - strandat 2340.791 kb on - strandat 2340.798 kb on + strandat 2340.805 kb on - strandat 2340.841 kb on + strandat 2340.841 kb on + strandat 2340.848 kb on + strandat 2340.849 kb on - strandat 2340.849 kb on - strandat 2340.867 kb on + strandat 2340.874 kb on + strandat 2340.874 kb on + strandat 2340.882 kb on - strandat 2340.898 kb on + strandat 2340.936 kb on + strandat 2340.951 kb on + strandat 2340.955 kb on - strandat 2340.956 kb on + strandat 2341.062 kb on + strandat 2341.098 kb on - strandat 2341.221 kb on + strand, within CCNA_02190at 2341.221 kb on + strand, within CCNA_02190at 2341.221 kb on + strand, within CCNA_02190at 2341.221 kb on + strand, within CCNA_02190at 2341.221 kb on + strand, within CCNA_02190at 2341.229 kb on - strand, within CCNA_02190at 2341.231 kb on - strand, within CCNA_02190at 2341.243 kb on - strand, within CCNA_02190at 2341.260 kb on + strand, within CCNA_02190at 2341.277 kb on + strand, within CCNA_02190at 2341.285 kb on - strand, within CCNA_02190at 2341.307 kb on + strand, within CCNA_02190at 2341.325 kb on - strand, within CCNA_02190at 2341.331 kb on - strand, within CCNA_02190at 2341.342 kb on + strand, within CCNA_02190at 2341.366 kb on - strand, within CCNA_02190at 2341.371 kb on - strand, within CCNA_02190at 2341.403 kb on + strand, within CCNA_02190at 2341.464 kb on + strand, within CCNA_02190at 2341.473 kb on - strand, within CCNA_02190at 2341.500 kb on - strand, within CCNA_02190at 2341.537 kb on - strand, within CCNA_02190at 2341.542 kb on + strand, within CCNA_02190at 2341.549 kb on + strand, within CCNA_02190at 2341.557 kb on + strand, within CCNA_02190at 2341.591 kb on + strand, within CCNA_02190at 2341.601 kb on + strand, within CCNA_02190at 2341.609 kb on - strand, within CCNA_02190at 2341.625 kb on + strand, within CCNA_02190at 2341.651 kb on + strand, within CCNA_02190at 2341.687 kb on + strand, within CCNA_02190at 2341.758 kb on + strand, within CCNA_02190at 2341.763 kb on + strand, within CCNA_02190at 2341.763 kb on + strand, within CCNA_02190at 2341.763 kb on + strand, within CCNA_02190at 2341.763 kb on + strand, within CCNA_02190

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days
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2,339,088 + +1.4
2,339,092 + +0.6
2,339,138 + -1.4
2,339,218 + CCNA_02187 0.26 +0.5
2,339,229 - CCNA_02187 0.28 -1.4
2,339,312 + CCNA_02187 0.45 +1.5
2,339,312 + CCNA_02187 0.45 +1.8
2,339,320 - CCNA_02187 0.47 +2.5
2,339,357 + CCNA_02187 0.55 +1.6
2,339,366 - CCNA_02187 0.56 -1.5
2,339,377 + CCNA_02187 0.59 +1.2
2,339,377 + CCNA_02187 0.59 +1.1
2,339,377 + CCNA_02187 0.59 +0.5
2,339,395 + CCNA_02187 0.62 +2.0
2,339,395 + CCNA_02187 0.62 -0.7
2,339,395 + CCNA_02187 0.62 +2.0
2,339,395 + CCNA_02187 0.62 +0.3
2,339,395 + CCNA_02187 0.62 -1.6
2,339,403 - CCNA_02187 0.64 -0.5
2,339,403 - CCNA_02187 0.64 -0.5
2,339,403 - -1.3
2,339,475 - CCNA_02187 0.79 -0.3
2,339,503 + CCNA_02187 0.84 +1.9
2,339,511 - CCNA_02187 0.86 +0.5
2,339,553 + +2.1
2,339,588 + +0.5
2,339,641 - CCNA_02188 0.14 +1.2
2,339,678 + CCNA_02188 0.22 -2.6
2,339,678 + CCNA_02188 0.22 +1.0
2,339,686 - CCNA_02188 0.23 +2.5
2,339,726 + CCNA_02188 0.32 +0.1
2,339,743 + CCNA_02188 0.35 -0.3
2,339,746 - CCNA_02188 0.36 -0.5
2,339,764 + CCNA_02188 0.40 -3.1
2,339,764 + CCNA_02188 0.40 +0.1
2,339,777 - CCNA_02188 0.43 -0.3
2,339,780 + CCNA_02188 0.43 -2.9
2,339,784 + CCNA_02188 0.44 -0.2
2,339,797 - CCNA_02188 0.47 +0.9
2,339,805 + CCNA_02188 0.49 +0.1
2,339,810 + CCNA_02188 0.50 +1.1
2,339,831 + CCNA_02188 0.54 -0.2
2,339,851 + CCNA_02188 0.58 +0.5
2,339,912 + CCNA_02188 0.71 -0.8
2,339,920 - CCNA_02188 0.73 +0.5
2,339,948 + CCNA_02188 0.79 +1.1
2,339,956 - CCNA_02188 0.80 -2.6
2,339,975 - CCNA_02188 0.84 -1.2
2,339,997 + CCNA_02188 0.89 +0.8
2,340,050 - +0.5
2,340,179 + CCNA_02189 0.16 -2.3
2,340,181 + CCNA_02189 0.16 -0.9
2,340,189 - CCNA_02189 0.17 -0.9
2,340,197 - CCNA_02189 0.18 -0.6
2,340,208 - CCNA_02189 0.20 -0.8
2,340,215 + CCNA_02189 0.21 -2.2
2,340,232 + CCNA_02189 0.23 -0.7
2,340,248 + CCNA_02189 0.25 -2.1
2,340,249 + CCNA_02189 0.25 -1.5
2,340,257 - CCNA_02189 0.26 -1.6
2,340,271 + CCNA_02189 0.28 -1.1
2,340,399 + CCNA_02189 0.44 -2.4
2,340,417 + CCNA_02189 0.47 +0.2
2,340,490 + CCNA_02189 0.56 -1.9
2,340,498 - CCNA_02189 0.57 -2.2
2,340,549 + CCNA_02189 0.64 +0.0
2,340,558 + CCNA_02189 0.65 -1.6
2,340,600 + CCNA_02189 0.70 +0.3
2,340,689 + CCNA_02189 0.82 -0.6
2,340,692 + CCNA_02189 0.82 -0.6
2,340,697 + CCNA_02189 0.83 -2.4
2,340,697 + CCNA_02189 0.83 -1.6
2,340,705 - CCNA_02189 0.84 -2.8
2,340,705 - CCNA_02189 0.84 +2.5
2,340,722 - CCNA_02189 0.86 -1.2
2,340,722 - CCNA_02189 0.86 -2.8
2,340,754 + -1.5
2,340,754 + -1.5
2,340,762 - -3.5
2,340,762 - -1.1
2,340,762 - +0.4
2,340,762 - -0.3
2,340,765 + -2.0
2,340,765 + -0.1
2,340,765 + -3.2
2,340,765 + -1.6
2,340,765 + +0.5
2,340,765 + -1.4
2,340,773 - -0.0
2,340,773 - +1.5
2,340,773 - -0.9
2,340,773 - -2.3
2,340,791 - +4.9
2,340,798 + -2.1
2,340,805 - +1.1
2,340,841 + -0.8
2,340,841 + -0.2
2,340,848 + -2.3
2,340,849 - +0.5
2,340,849 - -1.7
2,340,867 + +0.2
2,340,874 + +0.9
2,340,874 + -1.1
2,340,882 - -1.9
2,340,898 + +1.1
2,340,936 + -0.6
2,340,951 + +0.9
2,340,955 - -0.6
2,340,956 + +1.7
2,341,062 + -0.1
2,341,098 - +0.2
2,341,221 + CCNA_02190 0.15 -1.5
2,341,221 + CCNA_02190 0.15 -0.1
2,341,221 + CCNA_02190 0.15 +1.7
2,341,221 + CCNA_02190 0.15 +2.5
2,341,221 + CCNA_02190 0.15 -3.1
2,341,229 - CCNA_02190 0.15 -1.7
2,341,231 - CCNA_02190 0.15 -1.5
2,341,243 - CCNA_02190 0.16 -0.6
2,341,260 + CCNA_02190 0.16 -1.6
2,341,277 + CCNA_02190 0.17 +0.3
2,341,285 - CCNA_02190 0.18 +2.5
2,341,307 + CCNA_02190 0.19 -2.1
2,341,325 - CCNA_02190 0.19 -0.3
2,341,331 - CCNA_02190 0.20 +0.1
2,341,342 + CCNA_02190 0.20 -0.3
2,341,366 - CCNA_02190 0.21 +0.9
2,341,371 - CCNA_02190 0.22 -1.8
2,341,403 + CCNA_02190 0.23 -3.3
2,341,464 + CCNA_02190 0.26 +0.9
2,341,473 - CCNA_02190 0.26 +0.5
2,341,500 - CCNA_02190 0.28 -0.8
2,341,537 - CCNA_02190 0.29 +1.4
2,341,542 + CCNA_02190 0.30 -1.0
2,341,549 + CCNA_02190 0.30 +0.6
2,341,557 + CCNA_02190 0.30 +0.0
2,341,591 + CCNA_02190 0.32 +1.2
2,341,601 + CCNA_02190 0.32 +0.4
2,341,609 - CCNA_02190 0.33 -1.8
2,341,625 + CCNA_02190 0.34 -1.2
2,341,651 + CCNA_02190 0.35 -2.9
2,341,687 + CCNA_02190 0.36 -2.1
2,341,758 + CCNA_02190 0.40 -0.1
2,341,763 + CCNA_02190 0.40 -0.8
2,341,763 + CCNA_02190 0.40 -0.8
2,341,763 + CCNA_02190 0.40 +1.2
2,341,763 + CCNA_02190 0.40 -2.6

Or see this region's nucleotide sequence