Experiment: PYE 25C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01227 and CCNA_01228 overlap by 4 nucleotides CCNA_01228 and CCNA_01229 overlap by 4 nucleotides CCNA_01229 and CCNA_01230 are separated by 71 nucleotides
CCNA_01227: CCNA_01227 - alkanesulfonate monoxygenase, at 1,353,981 to 1,355,048
_01227
CCNA_01228: CCNA_01228 - pyrazinamidase/nicotinamidase, at 1,355,045 to 1,355,674
_01228
CCNA_01229: CCNA_01229 - 2-hydroxychromene-2-carboxylate isomerase, at 1,355,671 to 1,357,023
_01229
CCNA_01230: CCNA_01230 - arylsulfatase family protein, at 1,357,095 to 1,358,750
_01230
Position (kb)
1355
1356
1357
1358 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1354.692 kb on + strand, within CCNA_01227 at 1354.707 kb on + strand, within CCNA_01227 at 1354.707 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.714 kb on + strand, within CCNA_01227 at 1354.724 kb on + strand, within CCNA_01227 at 1354.724 kb on + strand, within CCNA_01227 at 1354.732 kb on - strand, within CCNA_01227 at 1354.753 kb on + strand, within CCNA_01227 at 1354.758 kb on + strand, within CCNA_01227 at 1354.758 kb on + strand, within CCNA_01227 at 1354.773 kb on - strand, within CCNA_01227 at 1354.780 kb on + strand, within CCNA_01227 at 1354.833 kb on - strand, within CCNA_01227 at 1354.837 kb on + strand, within CCNA_01227 at 1354.892 kb on - strand, within CCNA_01227 at 1354.933 kb on - strand, within CCNA_01227 at 1354.945 kb on + strand at 1354.973 kb on - strand at 1355.081 kb on + strand at 1355.081 kb on + strand at 1355.180 kb on - strand, within CCNA_01228 at 1355.194 kb on + strand, within CCNA_01228 at 1355.228 kb on - strand, within CCNA_01228 at 1355.262 kb on + strand, within CCNA_01228 at 1355.275 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.306 kb on + strand, within CCNA_01228 at 1355.311 kb on + strand, within CCNA_01228 at 1355.314 kb on - strand, within CCNA_01228 at 1355.314 kb on - strand, within CCNA_01228 at 1355.314 kb on - strand, within CCNA_01228 at 1355.321 kb on + strand, within CCNA_01228 at 1355.324 kb on - strand, within CCNA_01228 at 1355.368 kb on + strand, within CCNA_01228 at 1355.413 kb on + strand, within CCNA_01228 at 1355.582 kb on - strand, within CCNA_01228 at 1355.604 kb on + strand, within CCNA_01228 at 1355.619 kb on + strand at 1355.619 kb on - strand at 1355.718 kb on + strand at 1355.750 kb on - strand at 1355.751 kb on - strand at 1355.765 kb on - strand at 1355.792 kb on + strand at 1355.804 kb on + strand at 1355.812 kb on - strand, within CCNA_01229 at 1355.835 kb on - strand, within CCNA_01229 at 1355.835 kb on - strand, within CCNA_01229 at 1355.848 kb on + strand, within CCNA_01229 at 1355.849 kb on - strand, within CCNA_01229 at 1355.851 kb on + strand, within CCNA_01229 at 1355.884 kb on + strand, within CCNA_01229 at 1355.887 kb on - strand, within CCNA_01229 at 1355.909 kb on + strand, within CCNA_01229 at 1355.965 kb on - strand, within CCNA_01229 at 1355.980 kb on + strand, within CCNA_01229 at 1355.988 kb on - strand, within CCNA_01229 at 1355.988 kb on - strand, within CCNA_01229 at 1355.992 kb on + strand, within CCNA_01229 at 1356.084 kb on - strand, within CCNA_01229 at 1356.102 kb on + strand, within CCNA_01229 at 1356.103 kb on + strand, within CCNA_01229 at 1356.103 kb on + strand, within CCNA_01229 at 1356.103 kb on + strand, within CCNA_01229 at 1356.103 kb on + strand, within CCNA_01229 at 1356.116 kb on - strand, within CCNA_01229 at 1356.130 kb on - strand, within CCNA_01229 at 1356.138 kb on + strand, within CCNA_01229 at 1356.138 kb on + strand, within CCNA_01229 at 1356.163 kb on - strand, within CCNA_01229 at 1356.178 kb on + strand, within CCNA_01229 at 1356.178 kb on + strand, within CCNA_01229 at 1356.191 kb on + strand, within CCNA_01229 at 1356.191 kb on + strand, within CCNA_01229 at 1356.191 kb on + strand, within CCNA_01229 at 1356.191 kb on + strand, within CCNA_01229 at 1356.199 kb on - strand, within CCNA_01229 at 1356.204 kb on - strand, within CCNA_01229 at 1356.204 kb on - strand, within CCNA_01229 at 1356.207 kb on + strand, within CCNA_01229 at 1356.348 kb on + strand, within CCNA_01229 at 1356.356 kb on - strand, within CCNA_01229 at 1356.356 kb on - strand, within CCNA_01229 at 1356.356 kb on - strand, within CCNA_01229 at 1356.375 kb on + strand, within CCNA_01229 at 1356.401 kb on + strand, within CCNA_01229 at 1356.401 kb on + strand, within CCNA_01229 at 1356.409 kb on - strand, within CCNA_01229 at 1356.409 kb on - strand, within CCNA_01229 at 1356.409 kb on - strand, within CCNA_01229 at 1356.409 kb on - strand, within CCNA_01229 at 1356.422 kb on + strand, within CCNA_01229 at 1356.422 kb on + strand, within CCNA_01229 at 1356.461 kb on - strand, within CCNA_01229 at 1356.498 kb on + strand, within CCNA_01229 at 1356.506 kb on - strand, within CCNA_01229 at 1356.506 kb on - strand, within CCNA_01229 at 1356.560 kb on - strand, within CCNA_01229 at 1356.606 kb on + strand, within CCNA_01229 at 1356.614 kb on - strand, within CCNA_01229 at 1356.614 kb on - strand, within CCNA_01229 at 1356.627 kb on - strand, within CCNA_01229 at 1356.636 kb on - strand, within CCNA_01229 at 1356.637 kb on + strand, within CCNA_01229 at 1356.637 kb on + strand, within CCNA_01229 at 1356.656 kb on - strand, within CCNA_01229 at 1356.663 kb on + strand, within CCNA_01229 at 1356.671 kb on - strand, within CCNA_01229 at 1356.687 kb on + strand, within CCNA_01229 at 1356.695 kb on - strand, within CCNA_01229 at 1356.695 kb on - strand, within CCNA_01229 at 1356.723 kb on + strand, within CCNA_01229 at 1356.723 kb on + strand, within CCNA_01229 at 1356.731 kb on - strand, within CCNA_01229 at 1356.731 kb on - strand, within CCNA_01229 at 1356.731 kb on - strand, within CCNA_01229 at 1356.731 kb on - strand, within CCNA_01229 at 1356.748 kb on + strand, within CCNA_01229 at 1356.829 kb on + strand, within CCNA_01229 at 1356.955 kb on + strand at 1356.955 kb on + strand at 1356.955 kb on + strand at 1356.963 kb on - strand at 1356.963 kb on - strand at 1356.963 kb on - strand at 1356.963 kb on - strand at 1356.975 kb on - strand at 1357.004 kb on + strand at 1357.004 kb on + strand at 1357.072 kb on + strand at 1357.074 kb on + strand at 1357.082 kb on - strand at 1357.190 kb on + strand at 1357.198 kb on - strand at 1357.198 kb on - strand at 1357.270 kb on + strand, within CCNA_01230 at 1357.324 kb on + strand, within CCNA_01230 at 1357.324 kb on + strand, within CCNA_01230 at 1357.357 kb on + strand, within CCNA_01230 at 1357.362 kb on + strand, within CCNA_01230 at 1357.364 kb on + strand, within CCNA_01230 at 1357.365 kb on - strand, within CCNA_01230 at 1357.365 kb on - strand, within CCNA_01230 at 1357.383 kb on - strand, within CCNA_01230 at 1357.415 kb on + strand, within CCNA_01230 at 1357.424 kb on - strand, within CCNA_01230 at 1357.443 kb on + strand, within CCNA_01230 at 1357.457 kb on + strand, within CCNA_01230 at 1357.504 kb on - strand, within CCNA_01230 at 1357.509 kb on + strand, within CCNA_01230 at 1357.515 kb on - strand, within CCNA_01230 at 1357.551 kb on + strand, within CCNA_01230 at 1357.551 kb on + strand, within CCNA_01230 at 1357.551 kb on + strand, within CCNA_01230 at 1357.551 kb on + strand, within CCNA_01230 at 1357.553 kb on + strand, within CCNA_01230 at 1357.595 kb on + strand, within CCNA_01230 at 1357.595 kb on + strand, within CCNA_01230 at 1357.597 kb on + strand, within CCNA_01230 at 1357.610 kb on + strand at 1357.665 kb on - strand, within CCNA_01230 at 1357.675 kb on + strand, within CCNA_01230 at 1357.675 kb on + strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.683 kb on - strand, within CCNA_01230 at 1357.698 kb on - strand, within CCNA_01230 at 1357.746 kb on + strand, within CCNA_01230 at 1357.775 kb on + strand, within CCNA_01230 at 1357.783 kb on - strand, within CCNA_01230 at 1357.862 kb on - strand, within CCNA_01230 at 1357.889 kb on + strand, within CCNA_01230 at 1357.889 kb on + strand, within CCNA_01230 at 1357.894 kb on + strand, within CCNA_01230 at 1357.897 kb on - strand, within CCNA_01230 at 1357.897 kb on - strand, within CCNA_01230 at 1357.897 kb on - strand, within CCNA_01230 at 1357.985 kb on + strand, within CCNA_01230 at 1357.991 kb on - strand, within CCNA_01230 at 1357.997 kb on + strand, within CCNA_01230 at 1358.004 kb on + strand, within CCNA_01230
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days remove 1,354,692 + CCNA_01227 0.67 +1.9 1,354,707 + CCNA_01227 0.68 -1.6 1,354,707 + CCNA_01227 0.68 -3.1 1,354,714 + CCNA_01227 0.69 -2.2 1,354,714 + CCNA_01227 0.69 -2.0 1,354,714 + CCNA_01227 0.69 -3.0 1,354,714 + CCNA_01227 0.69 -1.7 1,354,714 + CCNA_01227 0.69 -0.2 1,354,714 + CCNA_01227 0.69 -2.4 1,354,724 + CCNA_01227 0.70 +0.4 1,354,724 + CCNA_01227 0.70 -0.9 1,354,732 - CCNA_01227 0.70 +1.4 1,354,753 + CCNA_01227 0.72 -2.3 1,354,758 + CCNA_01227 0.73 -2.7 1,354,758 + CCNA_01227 0.73 -0.5 1,354,773 - CCNA_01227 0.74 +2.7 1,354,780 + CCNA_01227 0.75 -2.3 1,354,833 - CCNA_01227 0.80 +1.1 1,354,837 + CCNA_01227 0.80 +0.7 1,354,892 - CCNA_01227 0.85 -2.1 1,354,933 - CCNA_01227 0.89 -0.5 1,354,945 + +0.2 1,354,973 - +1.2 1,355,081 + -0.8 1,355,081 + -3.1 1,355,180 - CCNA_01228 0.21 +0.1 1,355,194 + CCNA_01228 0.24 -0.8 1,355,228 - CCNA_01228 0.29 +0.9 1,355,262 + CCNA_01228 0.34 +0.9 1,355,275 + CCNA_01228 0.37 -0.6 1,355,306 + CCNA_01228 0.41 -0.4 1,355,306 + CCNA_01228 0.41 -2.2 1,355,306 + CCNA_01228 0.41 +1.0 1,355,306 + CCNA_01228 0.41 -1.3 1,355,306 + CCNA_01228 0.41 +0.9 1,355,306 + CCNA_01228 0.41 +1.5 1,355,306 + CCNA_01228 0.41 +2.8 1,355,306 + CCNA_01228 0.41 -0.5 1,355,311 + CCNA_01228 0.42 -1.6 1,355,314 - CCNA_01228 0.43 -2.0 1,355,314 - CCNA_01228 0.43 +1.3 1,355,314 - CCNA_01228 0.43 -2.8 1,355,321 + CCNA_01228 0.44 -2.0 1,355,324 - CCNA_01228 0.44 -3.5 1,355,368 + CCNA_01228 0.51 -2.2 1,355,413 + CCNA_01228 0.58 -0.6 1,355,582 - CCNA_01228 0.85 -1.2 1,355,604 + CCNA_01228 0.89 -0.6 1,355,619 + -0.1 1,355,619 - +1.7 1,355,718 + -0.8 1,355,750 - -0.4 1,355,751 - -0.8 1,355,765 - -2.1 1,355,792 + -0.6 1,355,804 + -2.9 1,355,812 - CCNA_01229 0.10 -2.1 1,355,835 - CCNA_01229 0.12 +0.1 1,355,835 - CCNA_01229 0.12 -1.1 1,355,848 + CCNA_01229 0.13 +2.7 1,355,849 - CCNA_01229 0.13 -0.7 1,355,851 + CCNA_01229 0.13 +1.2 1,355,884 + CCNA_01229 0.16 -0.5 1,355,887 - CCNA_01229 0.16 -1.6 1,355,909 + CCNA_01229 0.18 -0.5 1,355,965 - CCNA_01229 0.22 -1.4 1,355,980 + CCNA_01229 0.23 -0.9 1,355,988 - CCNA_01229 0.23 -2.6 1,355,988 - CCNA_01229 0.23 +0.1 1,355,992 + CCNA_01229 0.24 +2.7 1,356,084 - CCNA_01229 0.31 -1.9 1,356,102 + CCNA_01229 0.32 +0.7 1,356,103 + CCNA_01229 0.32 +0.0 1,356,103 + CCNA_01229 0.32 +0.7 1,356,103 + CCNA_01229 0.32 -0.6 1,356,103 + CCNA_01229 0.32 +1.0 1,356,116 - CCNA_01229 0.33 -3.3 1,356,130 - CCNA_01229 0.34 +0.1 1,356,138 + CCNA_01229 0.35 +1.7 1,356,138 + CCNA_01229 0.35 +5.5 1,356,163 - CCNA_01229 0.36 -3.4 1,356,178 + CCNA_01229 0.37 +0.4 1,356,178 + CCNA_01229 0.37 -1.6 1,356,191 + CCNA_01229 0.38 -0.1 1,356,191 + CCNA_01229 0.38 -1.6 1,356,191 + CCNA_01229 0.38 -0.5 1,356,191 + CCNA_01229 0.38 -0.9 1,356,199 - CCNA_01229 0.39 -2.9 1,356,204 - CCNA_01229 0.39 -0.6 1,356,204 - CCNA_01229 0.39 +0.1 1,356,207 + CCNA_01229 0.40 -1.1 1,356,348 + CCNA_01229 0.50 +0.1 1,356,356 - CCNA_01229 0.51 -1.0 1,356,356 - CCNA_01229 0.51 +2.7 1,356,356 - CCNA_01229 0.51 -1.5 1,356,375 + CCNA_01229 0.52 -1.4 1,356,401 + CCNA_01229 0.54 -0.3 1,356,401 + CCNA_01229 0.54 -0.8 1,356,409 - CCNA_01229 0.55 -0.8 1,356,409 - CCNA_01229 0.55 +1.1 1,356,409 - CCNA_01229 0.55 -3.2 1,356,409 - CCNA_01229 0.55 -0.5 1,356,422 + CCNA_01229 0.56 -0.5 1,356,422 + CCNA_01229 0.56 -1.4 1,356,461 - CCNA_01229 0.58 -2.4 1,356,498 + CCNA_01229 0.61 -1.8 1,356,506 - CCNA_01229 0.62 -1.8 1,356,506 - CCNA_01229 0.62 -0.8 1,356,560 - CCNA_01229 0.66 -0.3 1,356,606 + CCNA_01229 0.69 -1.1 1,356,614 - CCNA_01229 0.70 +1.7 1,356,614 - CCNA_01229 0.70 -0.5 1,356,627 - CCNA_01229 0.71 -2.1 1,356,636 - CCNA_01229 0.71 +0.0 1,356,637 + CCNA_01229 0.71 -1.7 1,356,637 + CCNA_01229 0.71 -2.4 1,356,656 - CCNA_01229 0.73 -2.0 1,356,663 + CCNA_01229 0.73 -0.6 1,356,671 - CCNA_01229 0.74 +1.9 1,356,687 + CCNA_01229 0.75 -1.6 1,356,695 - CCNA_01229 0.76 -2.7 1,356,695 - CCNA_01229 0.76 -2.7 1,356,723 + CCNA_01229 0.78 -3.1 1,356,723 + CCNA_01229 0.78 +0.1 1,356,731 - CCNA_01229 0.78 -1.0 1,356,731 - CCNA_01229 0.78 -1.3 1,356,731 - CCNA_01229 0.78 +1.3 1,356,731 - CCNA_01229 0.78 -2.0 1,356,748 + CCNA_01229 0.80 -0.6 1,356,829 + CCNA_01229 0.86 -0.9 1,356,955 + -1.3 1,356,955 + +1.4 1,356,955 + +0.7 1,356,963 - -0.5 1,356,963 - +0.1 1,356,963 - +1.7 1,356,963 - +1.1 1,356,975 - +0.4 1,357,004 + -0.6 1,357,004 + +1.7 1,357,072 + +1.2 1,357,074 + -1.3 1,357,082 - -0.6 1,357,190 + -1.7 1,357,198 - -2.4 1,357,198 - +0.1 1,357,270 + CCNA_01230 0.11 -1.2 1,357,324 + CCNA_01230 0.14 -1.4 1,357,324 + CCNA_01230 0.14 -2.9 1,357,357 + CCNA_01230 0.16 -0.9 1,357,362 + CCNA_01230 0.16 +5.5 1,357,364 + CCNA_01230 0.16 +5.3 1,357,365 - CCNA_01230 0.16 -2.1 1,357,365 - CCNA_01230 0.16 +1.1 1,357,383 - CCNA_01230 0.17 -1.2 1,357,415 + CCNA_01230 0.19 -2.8 1,357,424 - CCNA_01230 0.20 +2.9 1,357,443 + CCNA_01230 0.21 +0.4 1,357,457 + CCNA_01230 0.22 -2.0 1,357,504 - CCNA_01230 0.25 +2.0 1,357,509 + CCNA_01230 0.25 +1.9 1,357,515 - CCNA_01230 0.25 +2.0 1,357,551 + CCNA_01230 0.28 +2.7 1,357,551 + CCNA_01230 0.28 -2.1 1,357,551 + CCNA_01230 0.28 +2.7 1,357,551 + CCNA_01230 0.28 +0.3 1,357,553 + CCNA_01230 0.28 -1.3 1,357,595 + CCNA_01230 0.30 +1.7 1,357,595 + CCNA_01230 0.30 +0.4 1,357,597 + CCNA_01230 0.30 -1.8 1,357,610 + +2.7 1,357,665 - CCNA_01230 0.34 -0.8 1,357,675 + CCNA_01230 0.35 +1.7 1,357,675 + CCNA_01230 0.35 +0.4 1,357,683 - CCNA_01230 0.36 -0.2 1,357,683 - CCNA_01230 0.36 +0.9 1,357,683 - CCNA_01230 0.36 +0.5 1,357,683 - CCNA_01230 0.36 +1.5 1,357,683 - CCNA_01230 0.36 +1.5 1,357,683 - CCNA_01230 0.36 +1.5 1,357,698 - CCNA_01230 0.36 +2.5 1,357,746 + CCNA_01230 0.39 -2.6 1,357,775 + CCNA_01230 0.41 +1.1 1,357,783 - CCNA_01230 0.42 +0.4 1,357,862 - CCNA_01230 0.46 +0.1 1,357,889 + CCNA_01230 0.48 -1.1 1,357,889 + CCNA_01230 0.48 -1.6 1,357,894 + CCNA_01230 0.48 -0.3 1,357,897 - CCNA_01230 0.48 +2.7 1,357,897 - CCNA_01230 0.48 -1.8 1,357,897 - CCNA_01230 0.48 +2.7 1,357,985 + CCNA_01230 0.54 -2.4 1,357,991 - CCNA_01230 0.54 +2.7 1,357,997 + CCNA_01230 0.54 +2.1 1,358,004 + CCNA_01230 0.55 -2.8
Or see this region's nucleotide sequence