Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01229

Experiment: PYE 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep2 28 days
1,354,692	+		CCNA_01227	0.67	+1.9
1,354,707	+		CCNA_01227	0.68	-1.6
1,354,707	+		CCNA_01227	0.68	-3.1
1,354,714	+		CCNA_01227	0.69	-2.2
1,354,714	+		CCNA_01227	0.69	-2.0
1,354,714	+		CCNA_01227	0.69	-3.0
1,354,714	+		CCNA_01227	0.69	-1.7
1,354,714	+		CCNA_01227	0.69	-0.2
1,354,714	+		CCNA_01227	0.69	-2.4
1,354,724	+		CCNA_01227	0.70	+0.4
1,354,724	+		CCNA_01227	0.70	-0.9
1,354,732	-		CCNA_01227	0.70	+1.4
1,354,753	+		CCNA_01227	0.72	-2.3
1,354,758	+		CCNA_01227	0.73	-2.7
1,354,758	+		CCNA_01227	0.73	-0.5
1,354,773	-		CCNA_01227	0.74	+2.7
1,354,780	+		CCNA_01227	0.75	-2.3
1,354,833	-		CCNA_01227	0.80	+1.1
1,354,837	+		CCNA_01227	0.80	+0.7
1,354,892	-		CCNA_01227	0.85	-2.1
1,354,933	-		CCNA_01227	0.89	-0.5
1,354,945	+				+0.2
1,354,973	-				+1.2
1,355,081	+				-0.8
1,355,081	+				-3.1
1,355,180	-		CCNA_01228	0.21	+0.1
1,355,194	+		CCNA_01228	0.24	-0.8
1,355,228	-		CCNA_01228	0.29	+0.9
1,355,262	+		CCNA_01228	0.34	+0.9
1,355,275	+		CCNA_01228	0.37	-0.6
1,355,306	+		CCNA_01228	0.41	-0.4
1,355,306	+		CCNA_01228	0.41	-2.2
1,355,306	+		CCNA_01228	0.41	+1.0
1,355,306	+		CCNA_01228	0.41	-1.3
1,355,306	+		CCNA_01228	0.41	+0.9
1,355,306	+		CCNA_01228	0.41	+1.5
1,355,306	+		CCNA_01228	0.41	+2.8
1,355,306	+		CCNA_01228	0.41	-0.5
1,355,311	+		CCNA_01228	0.42	-1.6
1,355,314	-		CCNA_01228	0.43	-2.0
1,355,314	-		CCNA_01228	0.43	+1.3
1,355,314	-		CCNA_01228	0.43	-2.8
1,355,321	+		CCNA_01228	0.44	-2.0
1,355,324	-		CCNA_01228	0.44	-3.5
1,355,368	+		CCNA_01228	0.51	-2.2
1,355,413	+		CCNA_01228	0.58	-0.6
1,355,582	-		CCNA_01228	0.85	-1.2
1,355,604	+		CCNA_01228	0.89	-0.6
1,355,619	+				-0.1
1,355,619	-				+1.7
1,355,718	+				-0.8
1,355,750	-				-0.4
1,355,751	-				-0.8
1,355,765	-				-2.1
1,355,792	+				-0.6
1,355,804	+				-2.9
1,355,812	-		CCNA_01229	0.10	-2.1
1,355,835	-		CCNA_01229	0.12	+0.1
1,355,835	-		CCNA_01229	0.12	-1.1
1,355,848	+		CCNA_01229	0.13	+2.7
1,355,849	-		CCNA_01229	0.13	-0.7
1,355,851	+		CCNA_01229	0.13	+1.2
1,355,884	+		CCNA_01229	0.16	-0.5
1,355,887	-		CCNA_01229	0.16	-1.6
1,355,909	+		CCNA_01229	0.18	-0.5
1,355,965	-		CCNA_01229	0.22	-1.4
1,355,980	+		CCNA_01229	0.23	-0.9
1,355,988	-		CCNA_01229	0.23	-2.6
1,355,988	-		CCNA_01229	0.23	+0.1
1,355,992	+		CCNA_01229	0.24	+2.7
1,356,084	-		CCNA_01229	0.31	-1.9
1,356,102	+		CCNA_01229	0.32	+0.7
1,356,103	+		CCNA_01229	0.32	+0.0
1,356,103	+		CCNA_01229	0.32	+0.7
1,356,103	+		CCNA_01229	0.32	-0.6
1,356,103	+		CCNA_01229	0.32	+1.0
1,356,116	-		CCNA_01229	0.33	-3.3
1,356,130	-		CCNA_01229	0.34	+0.1
1,356,138	+		CCNA_01229	0.35	+1.7
1,356,138	+		CCNA_01229	0.35	+5.5
1,356,163	-		CCNA_01229	0.36	-3.4
1,356,178	+		CCNA_01229	0.37	+0.4
1,356,178	+		CCNA_01229	0.37	-1.6
1,356,191	+		CCNA_01229	0.38	-0.1
1,356,191	+		CCNA_01229	0.38	-1.6
1,356,191	+		CCNA_01229	0.38	-0.5
1,356,191	+		CCNA_01229	0.38	-0.9
1,356,199	-		CCNA_01229	0.39	-2.9
1,356,204	-		CCNA_01229	0.39	-0.6
1,356,204	-		CCNA_01229	0.39	+0.1
1,356,207	+		CCNA_01229	0.40	-1.1
1,356,348	+		CCNA_01229	0.50	+0.1
1,356,356	-		CCNA_01229	0.51	-1.0
1,356,356	-		CCNA_01229	0.51	+2.7
1,356,356	-		CCNA_01229	0.51	-1.5
1,356,375	+		CCNA_01229	0.52	-1.4
1,356,401	+		CCNA_01229	0.54	-0.3
1,356,401	+		CCNA_01229	0.54	-0.8
1,356,409	-		CCNA_01229	0.55	-0.8
1,356,409	-		CCNA_01229	0.55	+1.1
1,356,409	-		CCNA_01229	0.55	-3.2
1,356,409	-		CCNA_01229	0.55	-0.5
1,356,422	+		CCNA_01229	0.56	-0.5
1,356,422	+		CCNA_01229	0.56	-1.4
1,356,461	-		CCNA_01229	0.58	-2.4
1,356,498	+		CCNA_01229	0.61	-1.8
1,356,506	-		CCNA_01229	0.62	-1.8
1,356,506	-		CCNA_01229	0.62	-0.8
1,356,560	-		CCNA_01229	0.66	-0.3
1,356,606	+		CCNA_01229	0.69	-1.1
1,356,614	-		CCNA_01229	0.70	+1.7
1,356,614	-		CCNA_01229	0.70	-0.5
1,356,627	-		CCNA_01229	0.71	-2.1
1,356,636	-		CCNA_01229	0.71	+0.0
1,356,637	+		CCNA_01229	0.71	-1.7
1,356,637	+		CCNA_01229	0.71	-2.4
1,356,656	-		CCNA_01229	0.73	-2.0
1,356,663	+		CCNA_01229	0.73	-0.6
1,356,671	-		CCNA_01229	0.74	+1.9
1,356,687	+		CCNA_01229	0.75	-1.6
1,356,695	-		CCNA_01229	0.76	-2.7
1,356,695	-		CCNA_01229	0.76	-2.7
1,356,723	+		CCNA_01229	0.78	-3.1
1,356,723	+		CCNA_01229	0.78	+0.1
1,356,731	-		CCNA_01229	0.78	-1.0
1,356,731	-		CCNA_01229	0.78	-1.3
1,356,731	-		CCNA_01229	0.78	+1.3
1,356,731	-		CCNA_01229	0.78	-2.0
1,356,748	+		CCNA_01229	0.80	-0.6
1,356,829	+		CCNA_01229	0.86	-0.9
1,356,955	+				-1.3
1,356,955	+				+1.4
1,356,955	+				+0.7
1,356,963	-				-0.5
1,356,963	-				+0.1
1,356,963	-				+1.7
1,356,963	-				+1.1
1,356,975	-				+0.4
1,357,004	+				-0.6
1,357,004	+				+1.7
1,357,072	+				+1.2
1,357,074	+				-1.3
1,357,082	-				-0.6
1,357,190	+				-1.7
1,357,198	-				-2.4
1,357,198	-				+0.1
1,357,270	+		CCNA_01230	0.11	-1.2
1,357,324	+		CCNA_01230	0.14	-1.4
1,357,324	+		CCNA_01230	0.14	-2.9
1,357,357	+		CCNA_01230	0.16	-0.9
1,357,362	+		CCNA_01230	0.16	+5.5
1,357,364	+		CCNA_01230	0.16	+5.3
1,357,365	-		CCNA_01230	0.16	-2.1
1,357,365	-		CCNA_01230	0.16	+1.1
1,357,383	-		CCNA_01230	0.17	-1.2
1,357,415	+		CCNA_01230	0.19	-2.8
1,357,424	-		CCNA_01230	0.20	+2.9
1,357,443	+		CCNA_01230	0.21	+0.4
1,357,457	+		CCNA_01230	0.22	-2.0
1,357,504	-		CCNA_01230	0.25	+2.0
1,357,509	+		CCNA_01230	0.25	+1.9
1,357,515	-		CCNA_01230	0.25	+2.0
1,357,551	+		CCNA_01230	0.28	+2.7
1,357,551	+		CCNA_01230	0.28	-2.1
1,357,551	+		CCNA_01230	0.28	+2.7
1,357,551	+		CCNA_01230	0.28	+0.3
1,357,553	+		CCNA_01230	0.28	-1.3
1,357,595	+		CCNA_01230	0.30	+1.7
1,357,595	+		CCNA_01230	0.30	+0.4
1,357,597	+		CCNA_01230	0.30	-1.8
1,357,610	+				+2.7
1,357,665	-		CCNA_01230	0.34	-0.8
1,357,675	+		CCNA_01230	0.35	+1.7
1,357,675	+		CCNA_01230	0.35	+0.4
1,357,683	-		CCNA_01230	0.36	-0.2
1,357,683	-		CCNA_01230	0.36	+0.9
1,357,683	-		CCNA_01230	0.36	+0.5
1,357,683	-		CCNA_01230	0.36	+1.5
1,357,683	-		CCNA_01230	0.36	+1.5
1,357,683	-		CCNA_01230	0.36	+1.5
1,357,698	-		CCNA_01230	0.36	+2.5
1,357,746	+		CCNA_01230	0.39	-2.6
1,357,775	+		CCNA_01230	0.41	+1.1
1,357,783	-		CCNA_01230	0.42	+0.4
1,357,862	-		CCNA_01230	0.46	+0.1
1,357,889	+		CCNA_01230	0.48	-1.1
1,357,889	+		CCNA_01230	0.48	-1.6
1,357,894	+		CCNA_01230	0.48	-0.3
1,357,897	-		CCNA_01230	0.48	+2.7
1,357,897	-		CCNA_01230	0.48	-1.8
1,357,897	-		CCNA_01230	0.48	+2.7
1,357,985	+		CCNA_01230	0.54	-2.4
1,357,991	-		CCNA_01230	0.54	+2.7
1,357,997	+		CCNA_01230	0.54	+2.1
1,358,004	+		CCNA_01230	0.55	-2.8