Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01229

Experiment: PYE 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01227 and CCNA_01228 overlap by 4 nucleotidesCCNA_01228 and CCNA_01229 overlap by 4 nucleotidesCCNA_01229 and CCNA_01230 are separated by 71 nucleotides CCNA_01227: CCNA_01227 - alkanesulfonate monoxygenase, at 1,353,981 to 1,355,048 _01227 CCNA_01228: CCNA_01228 - pyrazinamidase/nicotinamidase, at 1,355,045 to 1,355,674 _01228 CCNA_01229: CCNA_01229 - 2-hydroxychromene-2-carboxylate isomerase, at 1,355,671 to 1,357,023 _01229 CCNA_01230: CCNA_01230 - arylsulfatase family protein, at 1,357,095 to 1,358,750 _01230 Position (kb) 1355 1356 1357 1358Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1354.692 kb on + strand, within CCNA_01227at 1354.707 kb on + strand, within CCNA_01227at 1354.707 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.714 kb on + strand, within CCNA_01227at 1354.724 kb on + strand, within CCNA_01227at 1354.724 kb on + strand, within CCNA_01227at 1354.732 kb on - strand, within CCNA_01227at 1354.753 kb on + strand, within CCNA_01227at 1354.758 kb on + strand, within CCNA_01227at 1354.758 kb on + strand, within CCNA_01227at 1354.773 kb on - strand, within CCNA_01227at 1354.780 kb on + strand, within CCNA_01227at 1354.833 kb on - strand, within CCNA_01227at 1354.837 kb on + strand, within CCNA_01227at 1354.892 kb on - strand, within CCNA_01227at 1354.933 kb on - strand, within CCNA_01227at 1354.945 kb on + strandat 1354.973 kb on - strandat 1355.081 kb on + strandat 1355.081 kb on + strandat 1355.180 kb on - strand, within CCNA_01228at 1355.194 kb on + strand, within CCNA_01228at 1355.228 kb on - strand, within CCNA_01228at 1355.262 kb on + strand, within CCNA_01228at 1355.275 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.306 kb on + strand, within CCNA_01228at 1355.311 kb on + strand, within CCNA_01228at 1355.314 kb on - strand, within CCNA_01228at 1355.314 kb on - strand, within CCNA_01228at 1355.314 kb on - strand, within CCNA_01228at 1355.321 kb on + strand, within CCNA_01228at 1355.324 kb on - strand, within CCNA_01228at 1355.368 kb on + strand, within CCNA_01228at 1355.413 kb on + strand, within CCNA_01228at 1355.582 kb on - strand, within CCNA_01228at 1355.604 kb on + strand, within CCNA_01228at 1355.619 kb on + strandat 1355.619 kb on - strandat 1355.718 kb on + strandat 1355.750 kb on - strandat 1355.751 kb on - strandat 1355.765 kb on - strandat 1355.792 kb on + strandat 1355.804 kb on + strandat 1355.812 kb on - strand, within CCNA_01229at 1355.835 kb on - strand, within CCNA_01229at 1355.835 kb on - strand, within CCNA_01229at 1355.848 kb on + strand, within CCNA_01229at 1355.849 kb on - strand, within CCNA_01229at 1355.851 kb on + strand, within CCNA_01229at 1355.884 kb on + strand, within CCNA_01229at 1355.887 kb on - strand, within CCNA_01229at 1355.909 kb on + strand, within CCNA_01229at 1355.965 kb on - strand, within CCNA_01229at 1355.980 kb on + strand, within CCNA_01229at 1355.988 kb on - strand, within CCNA_01229at 1355.988 kb on - strand, within CCNA_01229at 1355.992 kb on + strand, within CCNA_01229at 1356.084 kb on - strand, within CCNA_01229at 1356.102 kb on + strand, within CCNA_01229at 1356.103 kb on + strand, within CCNA_01229at 1356.103 kb on + strand, within CCNA_01229at 1356.103 kb on + strand, within CCNA_01229at 1356.103 kb on + strand, within CCNA_01229at 1356.116 kb on - strand, within CCNA_01229at 1356.130 kb on - strand, within CCNA_01229at 1356.138 kb on + strand, within CCNA_01229at 1356.138 kb on + strand, within CCNA_01229at 1356.163 kb on - strand, within CCNA_01229at 1356.178 kb on + strand, within CCNA_01229at 1356.178 kb on + strand, within CCNA_01229at 1356.191 kb on + strand, within CCNA_01229at 1356.191 kb on + strand, within CCNA_01229at 1356.191 kb on + strand, within CCNA_01229at 1356.191 kb on + strand, within CCNA_01229at 1356.199 kb on - strand, within CCNA_01229at 1356.204 kb on - strand, within CCNA_01229at 1356.204 kb on - strand, within CCNA_01229at 1356.207 kb on + strand, within CCNA_01229at 1356.348 kb on + strand, within CCNA_01229at 1356.356 kb on - strand, within CCNA_01229at 1356.356 kb on - strand, within CCNA_01229at 1356.356 kb on - strand, within CCNA_01229at 1356.375 kb on + strand, within CCNA_01229at 1356.401 kb on + strand, within CCNA_01229at 1356.401 kb on + strand, within CCNA_01229at 1356.409 kb on - strand, within CCNA_01229at 1356.409 kb on - strand, within CCNA_01229at 1356.409 kb on - strand, within CCNA_01229at 1356.409 kb on - strand, within CCNA_01229at 1356.422 kb on + strand, within CCNA_01229at 1356.422 kb on + strand, within CCNA_01229at 1356.461 kb on - strand, within CCNA_01229at 1356.498 kb on + strand, within CCNA_01229at 1356.506 kb on - strand, within CCNA_01229at 1356.506 kb on - strand, within CCNA_01229at 1356.560 kb on - strand, within CCNA_01229at 1356.606 kb on + strand, within CCNA_01229at 1356.614 kb on - strand, within CCNA_01229at 1356.614 kb on - strand, within CCNA_01229at 1356.627 kb on - strand, within CCNA_01229at 1356.636 kb on - strand, within CCNA_01229at 1356.637 kb on + strand, within CCNA_01229at 1356.637 kb on + strand, within CCNA_01229at 1356.656 kb on - strand, within CCNA_01229at 1356.663 kb on + strand, within CCNA_01229at 1356.671 kb on - strand, within CCNA_01229at 1356.687 kb on + strand, within CCNA_01229at 1356.695 kb on - strand, within CCNA_01229at 1356.695 kb on - strand, within CCNA_01229at 1356.723 kb on + strand, within CCNA_01229at 1356.723 kb on + strand, within CCNA_01229at 1356.731 kb on - strand, within CCNA_01229at 1356.731 kb on - strand, within CCNA_01229at 1356.731 kb on - strand, within CCNA_01229at 1356.731 kb on - strand, within CCNA_01229at 1356.748 kb on + strand, within CCNA_01229at 1356.829 kb on + strand, within CCNA_01229at 1356.955 kb on + strandat 1356.955 kb on + strandat 1356.955 kb on + strandat 1356.963 kb on - strandat 1356.963 kb on - strandat 1356.963 kb on - strandat 1356.963 kb on - strandat 1356.975 kb on - strandat 1357.004 kb on + strandat 1357.004 kb on + strandat 1357.072 kb on + strandat 1357.074 kb on + strandat 1357.082 kb on - strandat 1357.190 kb on + strandat 1357.198 kb on - strandat 1357.198 kb on - strandat 1357.270 kb on + strand, within CCNA_01230at 1357.324 kb on + strand, within CCNA_01230at 1357.324 kb on + strand, within CCNA_01230at 1357.357 kb on + strand, within CCNA_01230at 1357.362 kb on + strand, within CCNA_01230at 1357.364 kb on + strand, within CCNA_01230at 1357.365 kb on - strand, within CCNA_01230at 1357.365 kb on - strand, within CCNA_01230at 1357.383 kb on - strand, within CCNA_01230at 1357.415 kb on + strand, within CCNA_01230at 1357.424 kb on - strand, within CCNA_01230at 1357.443 kb on + strand, within CCNA_01230at 1357.457 kb on + strand, within CCNA_01230at 1357.504 kb on - strand, within CCNA_01230at 1357.509 kb on + strand, within CCNA_01230at 1357.515 kb on - strand, within CCNA_01230at 1357.551 kb on + strand, within CCNA_01230at 1357.551 kb on + strand, within CCNA_01230at 1357.551 kb on + strand, within CCNA_01230at 1357.551 kb on + strand, within CCNA_01230at 1357.553 kb on + strand, within CCNA_01230at 1357.595 kb on + strand, within CCNA_01230at 1357.595 kb on + strand, within CCNA_01230at 1357.597 kb on + strand, within CCNA_01230at 1357.610 kb on + strandat 1357.665 kb on - strand, within CCNA_01230at 1357.675 kb on + strand, within CCNA_01230at 1357.675 kb on + strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.683 kb on - strand, within CCNA_01230at 1357.698 kb on - strand, within CCNA_01230at 1357.746 kb on + strand, within CCNA_01230at 1357.775 kb on + strand, within CCNA_01230at 1357.783 kb on - strand, within CCNA_01230at 1357.862 kb on - strand, within CCNA_01230at 1357.889 kb on + strand, within CCNA_01230at 1357.889 kb on + strand, within CCNA_01230at 1357.894 kb on + strand, within CCNA_01230at 1357.897 kb on - strand, within CCNA_01230at 1357.897 kb on - strand, within CCNA_01230at 1357.897 kb on - strand, within CCNA_01230at 1357.985 kb on + strand, within CCNA_01230at 1357.991 kb on - strand, within CCNA_01230at 1357.997 kb on + strand, within CCNA_01230at 1358.004 kb on + strand, within CCNA_01230

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days
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1,354,692 + CCNA_01227 0.67 +1.9
1,354,707 + CCNA_01227 0.68 -1.6
1,354,707 + CCNA_01227 0.68 -3.1
1,354,714 + CCNA_01227 0.69 -2.2
1,354,714 + CCNA_01227 0.69 -2.0
1,354,714 + CCNA_01227 0.69 -3.0
1,354,714 + CCNA_01227 0.69 -1.7
1,354,714 + CCNA_01227 0.69 -0.2
1,354,714 + CCNA_01227 0.69 -2.4
1,354,724 + CCNA_01227 0.70 +0.4
1,354,724 + CCNA_01227 0.70 -0.9
1,354,732 - CCNA_01227 0.70 +1.4
1,354,753 + CCNA_01227 0.72 -2.3
1,354,758 + CCNA_01227 0.73 -2.7
1,354,758 + CCNA_01227 0.73 -0.5
1,354,773 - CCNA_01227 0.74 +2.7
1,354,780 + CCNA_01227 0.75 -2.3
1,354,833 - CCNA_01227 0.80 +1.1
1,354,837 + CCNA_01227 0.80 +0.7
1,354,892 - CCNA_01227 0.85 -2.1
1,354,933 - CCNA_01227 0.89 -0.5
1,354,945 + +0.2
1,354,973 - +1.2
1,355,081 + -0.8
1,355,081 + -3.1
1,355,180 - CCNA_01228 0.21 +0.1
1,355,194 + CCNA_01228 0.24 -0.8
1,355,228 - CCNA_01228 0.29 +0.9
1,355,262 + CCNA_01228 0.34 +0.9
1,355,275 + CCNA_01228 0.37 -0.6
1,355,306 + CCNA_01228 0.41 -0.4
1,355,306 + CCNA_01228 0.41 -2.2
1,355,306 + CCNA_01228 0.41 +1.0
1,355,306 + CCNA_01228 0.41 -1.3
1,355,306 + CCNA_01228 0.41 +0.9
1,355,306 + CCNA_01228 0.41 +1.5
1,355,306 + CCNA_01228 0.41 +2.8
1,355,306 + CCNA_01228 0.41 -0.5
1,355,311 + CCNA_01228 0.42 -1.6
1,355,314 - CCNA_01228 0.43 -2.0
1,355,314 - CCNA_01228 0.43 +1.3
1,355,314 - CCNA_01228 0.43 -2.8
1,355,321 + CCNA_01228 0.44 -2.0
1,355,324 - CCNA_01228 0.44 -3.5
1,355,368 + CCNA_01228 0.51 -2.2
1,355,413 + CCNA_01228 0.58 -0.6
1,355,582 - CCNA_01228 0.85 -1.2
1,355,604 + CCNA_01228 0.89 -0.6
1,355,619 + -0.1
1,355,619 - +1.7
1,355,718 + -0.8
1,355,750 - -0.4
1,355,751 - -0.8
1,355,765 - -2.1
1,355,792 + -0.6
1,355,804 + -2.9
1,355,812 - CCNA_01229 0.10 -2.1
1,355,835 - CCNA_01229 0.12 +0.1
1,355,835 - CCNA_01229 0.12 -1.1
1,355,848 + CCNA_01229 0.13 +2.7
1,355,849 - CCNA_01229 0.13 -0.7
1,355,851 + CCNA_01229 0.13 +1.2
1,355,884 + CCNA_01229 0.16 -0.5
1,355,887 - CCNA_01229 0.16 -1.6
1,355,909 + CCNA_01229 0.18 -0.5
1,355,965 - CCNA_01229 0.22 -1.4
1,355,980 + CCNA_01229 0.23 -0.9
1,355,988 - CCNA_01229 0.23 -2.6
1,355,988 - CCNA_01229 0.23 +0.1
1,355,992 + CCNA_01229 0.24 +2.7
1,356,084 - CCNA_01229 0.31 -1.9
1,356,102 + CCNA_01229 0.32 +0.7
1,356,103 + CCNA_01229 0.32 +0.0
1,356,103 + CCNA_01229 0.32 +0.7
1,356,103 + CCNA_01229 0.32 -0.6
1,356,103 + CCNA_01229 0.32 +1.0
1,356,116 - CCNA_01229 0.33 -3.3
1,356,130 - CCNA_01229 0.34 +0.1
1,356,138 + CCNA_01229 0.35 +1.7
1,356,138 + CCNA_01229 0.35 +5.5
1,356,163 - CCNA_01229 0.36 -3.4
1,356,178 + CCNA_01229 0.37 +0.4
1,356,178 + CCNA_01229 0.37 -1.6
1,356,191 + CCNA_01229 0.38 -0.1
1,356,191 + CCNA_01229 0.38 -1.6
1,356,191 + CCNA_01229 0.38 -0.5
1,356,191 + CCNA_01229 0.38 -0.9
1,356,199 - CCNA_01229 0.39 -2.9
1,356,204 - CCNA_01229 0.39 -0.6
1,356,204 - CCNA_01229 0.39 +0.1
1,356,207 + CCNA_01229 0.40 -1.1
1,356,348 + CCNA_01229 0.50 +0.1
1,356,356 - CCNA_01229 0.51 -1.0
1,356,356 - CCNA_01229 0.51 +2.7
1,356,356 - CCNA_01229 0.51 -1.5
1,356,375 + CCNA_01229 0.52 -1.4
1,356,401 + CCNA_01229 0.54 -0.3
1,356,401 + CCNA_01229 0.54 -0.8
1,356,409 - CCNA_01229 0.55 -0.8
1,356,409 - CCNA_01229 0.55 +1.1
1,356,409 - CCNA_01229 0.55 -3.2
1,356,409 - CCNA_01229 0.55 -0.5
1,356,422 + CCNA_01229 0.56 -0.5
1,356,422 + CCNA_01229 0.56 -1.4
1,356,461 - CCNA_01229 0.58 -2.4
1,356,498 + CCNA_01229 0.61 -1.8
1,356,506 - CCNA_01229 0.62 -1.8
1,356,506 - CCNA_01229 0.62 -0.8
1,356,560 - CCNA_01229 0.66 -0.3
1,356,606 + CCNA_01229 0.69 -1.1
1,356,614 - CCNA_01229 0.70 +1.7
1,356,614 - CCNA_01229 0.70 -0.5
1,356,627 - CCNA_01229 0.71 -2.1
1,356,636 - CCNA_01229 0.71 +0.0
1,356,637 + CCNA_01229 0.71 -1.7
1,356,637 + CCNA_01229 0.71 -2.4
1,356,656 - CCNA_01229 0.73 -2.0
1,356,663 + CCNA_01229 0.73 -0.6
1,356,671 - CCNA_01229 0.74 +1.9
1,356,687 + CCNA_01229 0.75 -1.6
1,356,695 - CCNA_01229 0.76 -2.7
1,356,695 - CCNA_01229 0.76 -2.7
1,356,723 + CCNA_01229 0.78 -3.1
1,356,723 + CCNA_01229 0.78 +0.1
1,356,731 - CCNA_01229 0.78 -1.0
1,356,731 - CCNA_01229 0.78 -1.3
1,356,731 - CCNA_01229 0.78 +1.3
1,356,731 - CCNA_01229 0.78 -2.0
1,356,748 + CCNA_01229 0.80 -0.6
1,356,829 + CCNA_01229 0.86 -0.9
1,356,955 + -1.3
1,356,955 + +1.4
1,356,955 + +0.7
1,356,963 - -0.5
1,356,963 - +0.1
1,356,963 - +1.7
1,356,963 - +1.1
1,356,975 - +0.4
1,357,004 + -0.6
1,357,004 + +1.7
1,357,072 + +1.2
1,357,074 + -1.3
1,357,082 - -0.6
1,357,190 + -1.7
1,357,198 - -2.4
1,357,198 - +0.1
1,357,270 + CCNA_01230 0.11 -1.2
1,357,324 + CCNA_01230 0.14 -1.4
1,357,324 + CCNA_01230 0.14 -2.9
1,357,357 + CCNA_01230 0.16 -0.9
1,357,362 + CCNA_01230 0.16 +5.5
1,357,364 + CCNA_01230 0.16 +5.3
1,357,365 - CCNA_01230 0.16 -2.1
1,357,365 - CCNA_01230 0.16 +1.1
1,357,383 - CCNA_01230 0.17 -1.2
1,357,415 + CCNA_01230 0.19 -2.8
1,357,424 - CCNA_01230 0.20 +2.9
1,357,443 + CCNA_01230 0.21 +0.4
1,357,457 + CCNA_01230 0.22 -2.0
1,357,504 - CCNA_01230 0.25 +2.0
1,357,509 + CCNA_01230 0.25 +1.9
1,357,515 - CCNA_01230 0.25 +2.0
1,357,551 + CCNA_01230 0.28 +2.7
1,357,551 + CCNA_01230 0.28 -2.1
1,357,551 + CCNA_01230 0.28 +2.7
1,357,551 + CCNA_01230 0.28 +0.3
1,357,553 + CCNA_01230 0.28 -1.3
1,357,595 + CCNA_01230 0.30 +1.7
1,357,595 + CCNA_01230 0.30 +0.4
1,357,597 + CCNA_01230 0.30 -1.8
1,357,610 + +2.7
1,357,665 - CCNA_01230 0.34 -0.8
1,357,675 + CCNA_01230 0.35 +1.7
1,357,675 + CCNA_01230 0.35 +0.4
1,357,683 - CCNA_01230 0.36 -0.2
1,357,683 - CCNA_01230 0.36 +0.9
1,357,683 - CCNA_01230 0.36 +0.5
1,357,683 - CCNA_01230 0.36 +1.5
1,357,683 - CCNA_01230 0.36 +1.5
1,357,683 - CCNA_01230 0.36 +1.5
1,357,698 - CCNA_01230 0.36 +2.5
1,357,746 + CCNA_01230 0.39 -2.6
1,357,775 + CCNA_01230 0.41 +1.1
1,357,783 - CCNA_01230 0.42 +0.4
1,357,862 - CCNA_01230 0.46 +0.1
1,357,889 + CCNA_01230 0.48 -1.1
1,357,889 + CCNA_01230 0.48 -1.6
1,357,894 + CCNA_01230 0.48 -0.3
1,357,897 - CCNA_01230 0.48 +2.7
1,357,897 - CCNA_01230 0.48 -1.8
1,357,897 - CCNA_01230 0.48 +2.7
1,357,985 + CCNA_01230 0.54 -2.4
1,357,991 - CCNA_01230 0.54 +2.7
1,357,997 + CCNA_01230 0.54 +2.1
1,358,004 + CCNA_01230 0.55 -2.8

Or see this region's nucleotide sequence