Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01064

Experiment: PYE 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep2 28 days
1,166,898	+		CCNA_01062	0.64	+0.4
1,166,898	-		CCNA_01062	0.64	-2.1
1,166,934	-		CCNA_01062	0.68	-2.6
1,166,947	+		CCNA_01062	0.69	+0.7
1,166,947	+		CCNA_01062	0.69	+2.0
1,166,947	+		CCNA_01062	0.69	+2.3
1,166,947	+		CCNA_01062	0.69	+0.5
1,166,955	-		CCNA_01062	0.70	-0.7
1,166,955	-		CCNA_01062	0.70	-0.2
1,166,955	-		CCNA_01062	0.70	+4.9
1,166,955	-		CCNA_01062	0.70	-1.0
1,166,962	-		CCNA_01062	0.71	+1.3
1,166,988	-		CCNA_01062	0.73	-1.2
1,167,014	+		CCNA_01062	0.76	-0.0
1,167,019	+		CCNA_01062	0.77	+0.2
1,167,019	+		CCNA_01062	0.77	+1.8
1,167,019	+		CCNA_01062	0.77	+0.5
1,167,019	+		CCNA_01062	0.77	-1.5
1,167,019	+		CCNA_01062	0.77	+0.3
1,167,019	+		CCNA_01062	0.77	-0.7
1,167,019	+		CCNA_01062	0.77	+2.9
1,167,019	+		CCNA_01062	0.77	-2.6
1,167,019	+		CCNA_01062	0.77	+2.1
1,167,022	-		CCNA_01062	0.77	+0.1
1,167,027	-		CCNA_01062	0.77	-1.1
1,167,027	-		CCNA_01062	0.77	-2.0
1,167,027	-		CCNA_01062	0.77	+1.0
1,167,027	-		CCNA_01062	0.77	-0.9
1,167,027	-		CCNA_01062	0.77	-1.5
1,167,027	-		CCNA_01062	0.77	+0.3
1,167,027	-		CCNA_01062	0.77	-1.8
1,167,027	-		CCNA_01062	0.77	-3.2
1,167,027	-		CCNA_01062	0.77	+1.5
1,167,037	+		CCNA_01062	0.78	+0.8
1,167,039	+		CCNA_01062	0.79	-1.5
1,167,065	+		CCNA_01062	0.81	-0.1
1,167,083	-		CCNA_01062	0.83	-3.0
1,167,151	+				+2.1
1,167,151	+				+0.1
1,167,157	+				+2.2
1,167,157	+				+0.8
1,167,159	-				-1.5
1,167,299	+				-1.0
1,167,308	-				-2.3
1,167,308	-				-2.2
1,167,310	+				-2.0
1,167,382	+		CCNA_01063	0.21	-3.1
1,167,382	+		CCNA_01063	0.21	-0.7
1,167,382	+		CCNA_01063	0.21	-6.3
1,167,382	+		CCNA_01063	0.21	-0.8
1,167,382	+		CCNA_01063	0.21	-2.0
1,167,382	+		CCNA_01063	0.21	-4.5
1,167,390	-		CCNA_01063	0.22	-3.9
1,167,390	-		CCNA_01063	0.22	+0.0
1,167,390	-		CCNA_01063	0.22	-3.6
1,167,390	-		CCNA_01063	0.22	-3.3
1,167,390	-		CCNA_01063	0.22	-1.2
1,167,390	-		CCNA_01063	0.22	-0.4
1,167,390	-		CCNA_01063	0.22	-3.0
1,167,392	+		CCNA_01063	0.22	-1.5
1,167,400	-		CCNA_01063	0.24	-1.0
1,167,442	-		CCNA_01063	0.30	-5.1
1,167,442	-		CCNA_01063	0.30	-2.9
1,167,444	+		CCNA_01063	0.30	-1.9
1,167,444	+		CCNA_01063	0.30	-0.3
1,167,525	+		CCNA_01063	0.43	-3.0
1,167,533	-		CCNA_01063	0.44	-3.0
1,167,533	-		CCNA_01063	0.44	-2.3
1,167,533	-		CCNA_01063	0.44	-3.3
1,167,535	+		CCNA_01063	0.44	-0.6
1,167,543	-		CCNA_01063	0.46	-0.7
1,167,563	+		CCNA_01063	0.49	-0.4
1,167,571	-		CCNA_01063	0.50	-3.1
1,167,576	-		CCNA_01063	0.51	-2.7
1,167,576	-		CCNA_01063	0.51	-2.7
1,167,576	-		CCNA_01063	0.51	-1.5
1,167,589	+		CCNA_01063	0.53	-1.9
1,167,594	+		CCNA_01063	0.54	-1.7
1,167,621	-		CCNA_01063	0.58	-4.5
1,167,642	+		CCNA_01063	0.61	-3.0
1,167,656	-		CCNA_01063	0.63	-4.6
1,167,658	+		CCNA_01063	0.63	-2.6
1,167,666	-		CCNA_01063	0.65	+2.3
1,167,712	+		CCNA_01063	0.72	-4.0
1,167,712	+		CCNA_01063	0.72	-4.9
1,167,712	+		CCNA_01063	0.72	-3.3
1,167,720	-		CCNA_01063	0.73	-1.2
1,167,733	+		CCNA_01063	0.75	-2.2
1,167,765	-		CCNA_01063	0.80	-3.5
1,167,768	+		CCNA_01063	0.80	+0.2
1,167,776	-		CCNA_01063	0.82	-1.4
1,167,873	+				+1.1
1,167,873	+				+1.7
1,167,873	+				+0.1
1,167,873	+				+2.8
1,167,875	-				-1.0
1,167,881	-				-0.8
1,167,881	-				-1.4
1,167,881	-				+1.6
1,167,881	-				+2.3
1,167,942	+				-2.1
1,167,960	-				+1.0
1,167,975	+				-1.8
1,167,982	-				-4.5
1,167,990	+				-2.4
1,168,026	+		CCNA_01064	0.12	-1.5
1,168,075	-		CCNA_01064	0.16	+1.0
1,168,077	+		CCNA_01064	0.17	-0.7
1,168,078	+		CCNA_01064	0.17	-2.2
1,168,078	+		CCNA_01064	0.17	-3.3
1,168,078	+		CCNA_01064	0.17	-0.2
1,168,194	-		CCNA_01064	0.27	-1.9
1,168,216	+		CCNA_01064	0.29	-3.6
1,168,216	+		CCNA_01064	0.29	-1.1
1,168,224	-		CCNA_01064	0.30	-1.6
1,168,224	-		CCNA_01064	0.30	-2.3
1,168,224	-		CCNA_01064	0.30	-2.5
1,168,246	-		CCNA_01064	0.32	-1.2
1,168,246	-				-1.3
1,168,271	+		CCNA_01064	0.34	-3.6
1,168,286	+		CCNA_01064	0.35	-3.1
1,168,286	+		CCNA_01064	0.35	-1.9
1,168,294	-		CCNA_01064	0.36	-2.1
1,168,294	-		CCNA_01064	0.36	-2.2
1,168,302	-		CCNA_01064	0.37	-0.5
1,168,327	-		CCNA_01064	0.39	-1.2
1,168,336	+		CCNA_01064	0.40	-2.1
1,168,336	+		CCNA_01064	0.40	-0.7
1,168,336	+		CCNA_01064	0.40	-1.8
1,168,336	+		CCNA_01064	0.40	-1.7
1,168,336	+		CCNA_01064	0.40	-3.9
1,168,336	+		CCNA_01064	0.40	-0.7
1,168,336	+		CCNA_01064	0.40	-4.4
1,168,336	+		CCNA_01064	0.40	-1.8
1,168,336	+		CCNA_01064	0.40	-0.6
1,168,336	+		CCNA_01064	0.40	-1.6
1,168,344	-		CCNA_01064	0.41	-3.7
1,168,344	-		CCNA_01064	0.41	-2.4
1,168,344	-		CCNA_01064	0.41	-2.8
1,168,344	-		CCNA_01064	0.41	-2.7
1,168,344	-		CCNA_01064	0.41	-3.9
1,168,365	+		CCNA_01064	0.42	-3.8
1,168,529	+		CCNA_01064	0.57	-3.6
1,168,536	+		CCNA_01064	0.58	-4.2
1,168,536	+		CCNA_01064	0.58	-2.4
1,168,637	+		CCNA_01064	0.67	-0.8
1,168,638	+		CCNA_01064	0.67	-4.9
1,168,640	+		CCNA_01064	0.67	-4.2
1,168,659	+		CCNA_01064	0.69	-2.2
1,168,659	+				+1.3
1,168,667	-		CCNA_01064	0.70	-0.2
1,168,720	-		CCNA_01064	0.74	+1.6
1,168,722	+		CCNA_01064	0.74	+0.2
1,168,748	+		CCNA_01064	0.77	-2.2
1,168,756	+		CCNA_01064	0.78	-2.0
1,168,756	+		CCNA_01064	0.78	-1.0
1,168,756	-		CCNA_01064	0.78	-1.8
1,168,794	-		CCNA_01064	0.81	-1.7
1,168,824	-		CCNA_01064	0.84	+1.1
1,168,851	+		CCNA_01064	0.86	-1.0
1,168,947	+				-1.4
1,168,947	+				+0.0
1,168,952	+				+0.2
1,168,955	-				-2.7
1,168,962	+				-1.7
1,168,988	+				-1.7
1,168,994	+				-2.0
1,168,995	+				-1.4
1,169,000	+				+1.6
1,169,000	+				+0.3
1,169,008	-				+2.6
1,169,019	+				-1.8
1,169,019	+				+0.1
1,169,019	+				-3.2
1,169,019	+				-3.8
1,169,019	+				-5.6
1,169,027	+				-1.9
1,169,027	+				-2.9
1,169,027	+				-2.2
1,169,035	-				-3.1
1,169,035	-				-1.0
1,169,040	-				-1.0
1,169,077	+				-4.4
1,169,077	+				-1.5
1,169,078	-				-2.1
1,169,120	+		CCNA_01065	0.11	-2.5
1,169,120	+		CCNA_01065	0.11	-2.7
1,169,193	+		CCNA_01065	0.18	-1.3
1,169,213	+		CCNA_01065	0.20	-2.2
1,169,238	+		CCNA_01065	0.22	-2.8
1,169,238	+		CCNA_01065	0.22	-1.7
1,169,252	+		CCNA_01065	0.23	-3.3
1,169,267	-		CCNA_01065	0.25	-1.3
1,169,279	+		CCNA_01065	0.26	-3.4
1,169,279	+		CCNA_01065	0.26	-4.9
1,169,303	-		CCNA_01065	0.28	-2.5
1,169,318	-		CCNA_01065	0.30	-5.1
1,169,347	-		CCNA_01065	0.32	-4.0
1,169,347	-		CCNA_01065	0.32	-0.5
1,169,370	+		CCNA_01065	0.35	-2.1
1,169,552	+		CCNA_01065	0.52	-1.3
1,169,567	-		CCNA_01065	0.54	-1.5
1,169,573	+		CCNA_01065	0.54	-2.9
1,169,581	-		CCNA_01065	0.55	-3.1
1,169,602	+		CCNA_01065	0.57	-2.6
1,169,602	+		CCNA_01065	0.57	-1.8
1,169,604	+		CCNA_01065	0.57	-1.4
1,169,610	-		CCNA_01065	0.58	-1.7
1,169,640	+		CCNA_01065	0.61	-1.5
1,169,640	+		CCNA_01065	0.61	-2.1
1,169,657	+		CCNA_01065	0.62	+0.6
1,169,658	+		CCNA_01065	0.62	-2.6
1,169,665	-		CCNA_01065	0.63	+1.6
1,169,674	+		CCNA_01065	0.64	-2.0
1,169,701	-		CCNA_01065	0.67	-1.3
1,169,751	+		CCNA_01065	0.71	-0.6
1,169,759	-		CCNA_01065	0.72	-2.5
1,169,779	-		CCNA_01065	0.74	-3.1
1,169,786	-		CCNA_01065	0.75	-3.0
1,169,788	+		CCNA_01065	0.75	-4.1
1,169,802	+		CCNA_01065	0.76	-0.9
1,169,820	-		CCNA_01065	0.78	-2.2
1,169,870	+		CCNA_01065	0.83	+0.3
1,169,870	+		CCNA_01065	0.83	-1.1
1,169,878	-		CCNA_01065	0.84	-0.5
1,169,878	-		CCNA_01065	0.84	-2.2
1,169,889	+		CCNA_01065	0.85	-1.7
1,169,889	+		CCNA_01065	0.85	-1.1
1,169,889	+		CCNA_01065	0.85	-3.6
1,169,897	-		CCNA_01065	0.85	-5.7
1,169,897	-		CCNA_01065	0.85	+1.1
1,169,897	-		CCNA_01065	0.85	+0.5
1,169,902	+		CCNA_01065	0.86	-0.6
1,169,902	+		CCNA_01065	0.86	-3.3
1,169,921	+		CCNA_01065	0.88	-1.7