Experiment: PYE 25C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00662 and CCNA_00663 are separated by 43 nucleotides CCNA_00663 and CCNA_R0010 are separated by 421 nucleotides CCNA_R0010 and CCNA_00664 are separated by 86 nucleotides CCNA_00664 and CCNA_00665 are separated by 167 nucleotides
CCNA_00662: CCNA_00662 - hypothetical protein, at 719,217 to 719,564
_00662
CCNA_00663: CCNA_00663 - bacterial apoptosis endonuclease BapE, at 719,608 to 719,943
_00663
CCNA_R0010: CCNA_R0010 - tRNA-Arg, at 720,365 to 720,441
_R0010
CCNA_00664: CCNA_00664 - C4-dicarboxylate transport protein, at 720,528 to 721,781
_00664
CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094
_00665
Position (kb) 720
721
722 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 719.572 kb on - strand at 719.592 kb on + strand at 719.604 kb on - strand at 719.605 kb on + strand at 719.638 kb on - strand at 719.655 kb on + strand, within CCNA_00663 at 719.655 kb on + strand, within CCNA_00663 at 719.655 kb on + strand, within CCNA_00663 at 719.655 kb on + strand, within CCNA_00663 at 719.660 kb on + strand, within CCNA_00663 at 719.663 kb on - strand, within CCNA_00663 at 719.663 kb on - strand, within CCNA_00663 at 719.668 kb on - strand, within CCNA_00663 at 719.695 kb on + strand, within CCNA_00663 at 719.695 kb on + strand, within CCNA_00663 at 719.703 kb on - strand, within CCNA_00663 at 719.703 kb on - strand, within CCNA_00663 at 719.721 kb on - strand, within CCNA_00663 at 719.721 kb on - strand, within CCNA_00663 at 719.743 kb on - strand, within CCNA_00663 at 719.744 kb on - strand, within CCNA_00663 at 719.746 kb on - strand, within CCNA_00663 at 719.775 kb on + strand, within CCNA_00663 at 719.790 kb on - strand, within CCNA_00663 at 719.799 kb on - strand, within CCNA_00663 at 719.816 kb on + strand, within CCNA_00663 at 719.819 kb on - strand, within CCNA_00663 at 719.846 kb on + strand, within CCNA_00663 at 719.973 kb on + strand at 719.973 kb on + strand at 719.973 kb on + strand at 719.981 kb on - strand at 719.981 kb on - strand at 719.981 kb on - strand at 720.023 kb on + strand at 720.024 kb on + strand at 720.034 kb on + strand at 720.034 kb on + strand at 720.042 kb on - strand at 720.042 kb on - strand at 720.042 kb on - strand at 720.050 kb on - strand at 720.050 kb on - strand at 720.050 kb on - strand at 720.068 kb on + strand at 720.128 kb on - strand at 720.136 kb on - strand at 720.147 kb on + strand at 720.161 kb on + strand at 720.209 kb on - strand at 720.256 kb on + strand at 720.326 kb on - strand at 720.326 kb on - strand at 720.327 kb on - strand at 720.341 kb on + strand at 720.341 kb on + strand at 720.341 kb on + strand at 720.341 kb on + strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.350 kb on + strand at 720.355 kb on + strand at 720.396 kb on - strand, within CCNA_R0010 at 720.424 kb on - strand, within CCNA_R0010 at 720.429 kb on - strand, within CCNA_R0010 at 720.432 kb on - strand, within CCNA_R0010 at 720.437 kb on + strand at 720.442 kb on + strand at 720.454 kb on + strand at 720.454 kb on + strand at 720.454 kb on + strand at 720.462 kb on - strand at 720.462 kb on - strand at 720.468 kb on + strand at 720.474 kb on + strand at 720.483 kb on + strand at 720.483 kb on + strand at 720.533 kb on - strand at 720.541 kb on + strand at 720.565 kb on + strand at 720.565 kb on + strand at 720.573 kb on + strand at 720.573 kb on - strand at 720.573 kb on - strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.639 kb on + strand at 720.644 kb on + strand at 720.644 kb on + strand at 720.653 kb on + strand at 720.717 kb on - strand, within CCNA_00664 at 720.746 kb on + strand, within CCNA_00664 at 720.761 kb on + strand, within CCNA_00664 at 720.762 kb on + strand, within CCNA_00664 at 720.768 kb on + strand, within CCNA_00664 at 720.779 kb on + strand, within CCNA_00664 at 720.830 kb on - strand, within CCNA_00664 at 720.896 kb on + strand, within CCNA_00664 at 720.904 kb on - strand, within CCNA_00664 at 720.928 kb on - strand, within CCNA_00664 at 721.032 kb on + strand, within CCNA_00664 at 721.052 kb on - strand, within CCNA_00664 at 721.052 kb on - strand, within CCNA_00664 at 721.101 kb on + strand, within CCNA_00664 at 721.109 kb on - strand, within CCNA_00664 at 721.109 kb on - strand, within CCNA_00664 at 721.109 kb on - strand, within CCNA_00664 at 721.130 kb on - strand, within CCNA_00664 at 721.150 kb on + strand, within CCNA_00664 at 721.169 kb on + strand, within CCNA_00664 at 721.197 kb on - strand, within CCNA_00664 at 721.211 kb on + strand, within CCNA_00664 at 721.251 kb on - strand, within CCNA_00664 at 721.275 kb on + strand, within CCNA_00664 at 721.292 kb on + strand, within CCNA_00664 at 721.292 kb on + strand, within CCNA_00664 at 721.300 kb on - strand, within CCNA_00664 at 721.300 kb on - strand, within CCNA_00664 at 721.300 kb on - strand, within CCNA_00664 at 721.315 kb on + strand, within CCNA_00664 at 721.318 kb on + strand, within CCNA_00664 at 721.318 kb on + strand, within CCNA_00664 at 721.358 kb on - strand, within CCNA_00664 at 721.382 kb on + strand, within CCNA_00664 at 721.404 kb on + strand, within CCNA_00664 at 721.412 kb on - strand, within CCNA_00664 at 721.412 kb on - strand, within CCNA_00664 at 721.433 kb on + strand, within CCNA_00664 at 721.443 kb on + strand, within CCNA_00664 at 721.443 kb on + strand, within CCNA_00664 at 721.446 kb on - strand, within CCNA_00664 at 721.451 kb on - strand, within CCNA_00664 at 721.451 kb on - strand, within CCNA_00664 at 721.457 kb on + strand, within CCNA_00664 at 721.457 kb on + strand, within CCNA_00664 at 721.459 kb on + strand, within CCNA_00664 at 721.478 kb on - strand, within CCNA_00664 at 721.486 kb on - strand, within CCNA_00664 at 721.502 kb on - strand, within CCNA_00664 at 721.552 kb on + strand, within CCNA_00664 at 721.567 kb on + strand, within CCNA_00664 at 721.567 kb on + strand, within CCNA_00664 at 721.571 kb on - strand, within CCNA_00664 at 721.592 kb on - strand, within CCNA_00664 at 721.624 kb on + strand, within CCNA_00664 at 721.646 kb on + strand, within CCNA_00664 at 721.646 kb on + strand, within CCNA_00664 at 721.646 kb on + strand, within CCNA_00664 at 721.654 kb on - strand, within CCNA_00664 at 721.654 kb on - strand, within CCNA_00664 at 721.654 kb on - strand, within CCNA_00664 at 721.654 kb on - strand, within CCNA_00664 at 721.654 kb on - strand, within CCNA_00664 at 721.682 kb on + strand at 721.690 kb on - strand at 721.717 kb on + strand at 721.753 kb on - strand at 721.755 kb on - strand at 721.774 kb on - strand at 721.805 kb on - strand at 721.829 kb on - strand at 721.846 kb on + strand at 721.846 kb on + strand at 721.861 kb on + strand at 721.890 kb on - strand at 721.939 kb on + strand at 721.957 kb on - strand at 721.957 kb on - strand at 721.968 kb on + strand at 722.071 kb on - strand, within CCNA_00665 at 722.129 kb on + strand, within CCNA_00665 at 722.132 kb on - strand, within CCNA_00665 at 722.134 kb on + strand, within CCNA_00665 at 722.170 kb on - strand, within CCNA_00665 at 722.176 kb on + strand, within CCNA_00665 at 722.177 kb on + strand, within CCNA_00665 at 722.200 kb on + strand at 722.208 kb on - strand, within CCNA_00665 at 722.208 kb on - strand, within CCNA_00665 at 722.244 kb on + strand, within CCNA_00665 at 722.244 kb on + strand, within CCNA_00665 at 722.252 kb on - strand, within CCNA_00665 at 722.252 kb on - strand, within CCNA_00665 at 722.272 kb on + strand, within CCNA_00665 at 722.295 kb on + strand, within CCNA_00665 at 722.359 kb on + strand, within CCNA_00665 at 722.406 kb on - strand, within CCNA_00665 at 722.407 kb on + strand, within CCNA_00665 at 722.407 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.435 kb on + strand, within CCNA_00665 at 722.437 kb on - strand, within CCNA_00665 at 722.437 kb on - strand, within CCNA_00665 at 722.437 kb on - strand, within CCNA_00665 at 722.443 kb on - strand, within CCNA_00665 at 722.443 kb on - strand, within CCNA_00665 at 722.443 kb on - strand, within CCNA_00665 at 722.475 kb on + strand, within CCNA_00665 at 722.513 kb on - strand, within CCNA_00665 at 722.513 kb on - strand, within CCNA_00665 at 722.513 kb on - strand, within CCNA_00665 at 722.556 kb on + strand, within CCNA_00665 at 722.556 kb on + strand, within CCNA_00665 at 722.574 kb on - strand, within CCNA_00665 at 722.600 kb on - strand at 722.618 kb on - strand, within CCNA_00665 at 722.618 kb on - strand, within CCNA_00665 at 722.633 kb on + strand, within CCNA_00665 at 722.659 kb on + strand, within CCNA_00665 at 722.682 kb on + strand, within CCNA_00665 at 722.699 kb on + strand, within CCNA_00665 at 722.738 kb on + strand, within CCNA_00665 at 722.745 kb on - strand, within CCNA_00665
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days remove 719,572 - +0.2 719,592 + +2.7 719,604 - +0.4 719,605 + +1.4 719,638 - +4.3 719,655 + CCNA_00663 0.14 +2.4 719,655 + CCNA_00663 0.14 -0.3 719,655 + CCNA_00663 0.14 +2.7 719,655 + CCNA_00663 0.14 -0.7 719,660 + CCNA_00663 0.15 -0.3 719,663 - CCNA_00663 0.16 -3.7 719,663 - CCNA_00663 0.16 -2.8 719,668 - CCNA_00663 0.18 -2.5 719,695 + CCNA_00663 0.26 +0.2 719,695 + CCNA_00663 0.26 +1.7 719,703 - CCNA_00663 0.28 +1.9 719,703 - CCNA_00663 0.28 +2.6 719,721 - CCNA_00663 0.34 +0.4 719,721 - CCNA_00663 0.34 +0.8 719,743 - CCNA_00663 0.40 +1.4 719,744 - CCNA_00663 0.40 -0.6 719,746 - CCNA_00663 0.41 +0.4 719,775 + CCNA_00663 0.50 +2.7 719,790 - CCNA_00663 0.54 -2.7 719,799 - CCNA_00663 0.57 +0.9 719,816 + CCNA_00663 0.62 +0.8 719,819 - CCNA_00663 0.63 -0.8 719,846 + CCNA_00663 0.71 +2.7 719,973 + -1.4 719,973 + -1.8 719,973 + +2.5 719,981 - +2.3 719,981 - +1.2 719,981 - +0.3 720,023 + -0.1 720,024 + -1.3 720,034 + +0.7 720,034 + +1.7 720,042 - -1.4 720,042 - -0.9 720,042 - -3.1 720,050 - -1.1 720,050 - -1.9 720,050 - -2.0 720,068 + +0.2 720,128 - -2.3 720,136 - +1.2 720,147 + -1.8 720,161 + -0.6 720,209 - -2.6 720,256 + -1.0 720,326 - +1.2 720,326 - -2.9 720,327 - -0.9 720,341 + -1.9 720,341 + +0.1 720,341 + -2.1 720,341 + +0.6 720,349 - +3.1 720,349 - -0.3 720,349 - +0.3 720,349 - +0.1 720,349 - +0.7 720,349 - -2.2 720,349 - -0.5 720,349 - -4.8 720,349 - -0.3 720,350 + -1.9 720,355 + -3.2 720,396 - CCNA_R0010 0.40 -1.6 720,424 - CCNA_R0010 0.77 +1.2 720,429 - CCNA_R0010 0.83 +2.8 720,432 - CCNA_R0010 0.87 -0.6 720,437 + -1.7 720,442 + -1.6 720,454 + -0.9 720,454 + +1.0 720,454 + +0.4 720,462 - -0.0 720,462 - +0.7 720,468 + -0.3 720,474 + -0.4 720,483 + -0.7 720,483 + +1.6 720,533 - -1.2 720,541 + -1.4 720,565 + +0.4 720,565 + -2.9 720,573 + +1.0 720,573 - -0.8 720,573 - -1.0 720,599 + +0.4 720,599 + +0.1 720,639 + -0.4 720,644 + +1.2 720,644 + -1.4 720,653 + -1.7 720,717 - CCNA_00664 0.15 -1.1 720,746 + CCNA_00664 0.17 +1.1 720,761 + CCNA_00664 0.19 +3.2 720,762 + CCNA_00664 0.19 -0.6 720,768 + CCNA_00664 0.19 +2.1 720,779 + CCNA_00664 0.20 -0.3 720,830 - CCNA_00664 0.24 +0.4 720,896 + CCNA_00664 0.29 -1.7 720,904 - CCNA_00664 0.30 +0.7 720,928 - CCNA_00664 0.32 +2.7 721,032 + CCNA_00664 0.40 +0.6 721,052 - CCNA_00664 0.42 -1.3 721,052 - CCNA_00664 0.42 +0.4 721,101 + CCNA_00664 0.46 +2.4 721,109 - CCNA_00664 0.46 -1.4 721,109 - CCNA_00664 0.46 +0.9 721,109 - CCNA_00664 0.46 +1.0 721,130 - CCNA_00664 0.48 +2.2 721,150 + CCNA_00664 0.50 -2.1 721,169 + CCNA_00664 0.51 +0.5 721,197 - CCNA_00664 0.53 -0.1 721,211 + CCNA_00664 0.54 +3.3 721,251 - CCNA_00664 0.58 +1.2 721,275 + CCNA_00664 0.60 +0.6 721,292 + CCNA_00664 0.61 +1.7 721,292 + CCNA_00664 0.61 +0.3 721,300 - CCNA_00664 0.62 -1.3 721,300 - CCNA_00664 0.62 +1.9 721,300 - CCNA_00664 0.62 +1.5 721,315 + CCNA_00664 0.63 -0.5 721,318 + CCNA_00664 0.63 -2.1 721,318 + CCNA_00664 0.63 +0.2 721,358 - CCNA_00664 0.66 +0.4 721,382 + CCNA_00664 0.68 +2.0 721,404 + CCNA_00664 0.70 -1.6 721,412 - CCNA_00664 0.70 -1.1 721,412 - CCNA_00664 0.70 +0.2 721,433 + CCNA_00664 0.72 -1.1 721,443 + CCNA_00664 0.73 +0.9 721,443 + CCNA_00664 0.73 +1.2 721,446 - CCNA_00664 0.73 -1.0 721,451 - CCNA_00664 0.74 +1.7 721,451 - CCNA_00664 0.74 -2.3 721,457 + CCNA_00664 0.74 -0.3 721,457 + CCNA_00664 0.74 +0.9 721,459 + CCNA_00664 0.74 +1.0 721,478 - CCNA_00664 0.76 -1.5 721,486 - CCNA_00664 0.76 +2.7 721,502 - CCNA_00664 0.78 +1.9 721,552 + CCNA_00664 0.82 +1.3 721,567 + CCNA_00664 0.83 +0.9 721,567 + CCNA_00664 0.83 -1.7 721,571 - CCNA_00664 0.83 -0.8 721,592 - CCNA_00664 0.85 -1.3 721,624 + CCNA_00664 0.87 -3.0 721,646 + CCNA_00664 0.89 +0.7 721,646 + CCNA_00664 0.89 +3.2 721,646 + CCNA_00664 0.89 -0.1 721,654 - CCNA_00664 0.90 +2.0 721,654 - CCNA_00664 0.90 -0.3 721,654 - CCNA_00664 0.90 -1.4 721,654 - CCNA_00664 0.90 -3.1 721,654 - CCNA_00664 0.90 +0.2 721,682 + -0.2 721,690 - +0.7 721,717 + -0.6 721,753 - -1.7 721,755 - -1.8 721,774 - -1.8 721,805 - +1.2 721,829 - -0.3 721,846 + +3.6 721,846 + +3.0 721,861 + +0.7 721,890 - -0.5 721,939 + -1.8 721,957 - -0.1 721,957 - -1.6 721,968 + -0.4 722,071 - CCNA_00665 0.11 -0.7 722,129 + CCNA_00665 0.16 -1.9 722,132 - CCNA_00665 0.16 +0.7 722,134 + CCNA_00665 0.16 -0.4 722,170 - CCNA_00665 0.19 +1.1 722,176 + CCNA_00665 0.20 -0.1 722,177 + CCNA_00665 0.20 +0.2 722,200 + -0.7 722,208 - CCNA_00665 0.23 +1.2 722,208 - CCNA_00665 0.23 +1.4 722,244 + CCNA_00665 0.26 -0.1 722,244 + CCNA_00665 0.26 +4.9 722,252 - CCNA_00665 0.26 -2.3 722,252 - CCNA_00665 0.26 -2.1 722,272 + CCNA_00665 0.28 +0.3 722,295 + CCNA_00665 0.30 -1.4 722,359 + CCNA_00665 0.36 -2.0 722,406 - CCNA_00665 0.40 +0.4 722,407 + CCNA_00665 0.40 -0.6 722,407 + CCNA_00665 0.40 +1.1 722,435 + CCNA_00665 0.42 -1.0 722,435 + CCNA_00665 0.42 +0.4 722,435 + CCNA_00665 0.42 +0.6 722,435 + CCNA_00665 0.42 -1.4 722,435 + CCNA_00665 0.42 -2.0 722,435 + CCNA_00665 0.42 +0.3 722,437 - CCNA_00665 0.43 -1.0 722,437 - CCNA_00665 0.43 -1.1 722,437 - CCNA_00665 0.43 +1.9 722,443 - CCNA_00665 0.43 -0.6 722,443 - CCNA_00665 0.43 -0.3 722,443 - CCNA_00665 0.43 +0.6 722,475 + CCNA_00665 0.46 +2.0 722,513 - CCNA_00665 0.49 -0.3 722,513 - CCNA_00665 0.49 -0.3 722,513 - CCNA_00665 0.49 -0.6 722,556 + CCNA_00665 0.53 -0.1 722,556 + CCNA_00665 0.53 +0.6 722,574 - CCNA_00665 0.55 -0.1 722,600 - +0.4 722,618 - CCNA_00665 0.58 +1.5 722,618 - CCNA_00665 0.58 -2.9 722,633 + CCNA_00665 0.60 +0.8 722,659 + CCNA_00665 0.62 -1.8 722,682 + CCNA_00665 0.64 -0.5 722,699 + CCNA_00665 0.65 +1.7 722,738 + CCNA_00665 0.69 +1.4 722,745 - CCNA_00665 0.69 +1.2
Or see this region's nucleotide sequence