Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00532

Experiment: PYE 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00530 and CCNA_00531 are separated by 45 nucleotidesCCNA_00531 and CCNA_00532 are separated by 423 nucleotidesCCNA_00532 and CCNA_00533 are separated by 22 nucleotides CCNA_00530: CCNA_00530 - LSU ribosomal protein L10P, at 542,581 to 543,099 _00530 CCNA_00531: CCNA_00531 - LSU ribosomal protein L12P (L7/L12), at 543,145 to 543,528 _00531 CCNA_00532: CCNA_00532 - hypothetical protein, RDD superfamily, at 543,952 to 544,842 _00532 CCNA_00533: CCNA_00533 - secreted polysaccharide polymerase hfsI, at 544,865 to 546,187 _00533 Position (kb) 543 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 543.625 kb on + strandat 543.633 kb on - strandat 543.684 kb on + strandat 543.692 kb on - strandat 543.692 kb on - strandat 543.692 kb on - strandat 543.705 kb on + strandat 543.705 kb on + strandat 543.706 kb on + strandat 543.728 kb on + strandat 543.736 kb on - strandat 543.746 kb on + strandat 543.746 kb on + strandat 543.754 kb on - strandat 543.754 kb on - strandat 543.774 kb on + strandat 543.827 kb on + strandat 543.828 kb on + strandat 543.893 kb on + strandat 543.923 kb on + strandat 543.941 kb on - strandat 543.947 kb on + strandat 543.955 kb on - strandat 543.969 kb on + strandat 543.974 kb on + strandat 543.982 kb on - strandat 543.982 kb on - strandat 543.983 kb on - strandat 543.993 kb on + strandat 543.993 kb on + strandat 543.993 kb on + strandat 544.011 kb on - strandat 544.026 kb on + strandat 544.026 kb on + strandat 544.034 kb on - strandat 544.039 kb on + strandat 544.044 kb on + strand, within CCNA_00532at 544.047 kb on - strand, within CCNA_00532at 544.085 kb on + strand, within CCNA_00532at 544.098 kb on + strand, within CCNA_00532at 544.114 kb on - strand, within CCNA_00532at 544.116 kb on - strand, within CCNA_00532at 544.142 kb on - strand, within CCNA_00532at 544.144 kb on - strand, within CCNA_00532at 544.144 kb on - strand, within CCNA_00532at 544.149 kb on - strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.163 kb on + strand, within CCNA_00532at 544.166 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.171 kb on - strand, within CCNA_00532at 544.196 kb on - strandat 544.220 kb on + strand, within CCNA_00532at 544.247 kb on - strand, within CCNA_00532at 544.320 kb on - strand, within CCNA_00532at 544.320 kb on - strand, within CCNA_00532at 544.351 kb on - strand, within CCNA_00532at 544.408 kb on - strand, within CCNA_00532at 544.421 kb on + strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.429 kb on - strand, within CCNA_00532at 544.472 kb on + strand, within CCNA_00532at 544.502 kb on + strand, within CCNA_00532at 544.531 kb on + strand, within CCNA_00532at 544.545 kb on - strand, within CCNA_00532at 544.556 kb on - strand, within CCNA_00532at 544.608 kb on + strand, within CCNA_00532at 544.608 kb on + strand, within CCNA_00532at 544.616 kb on - strand, within CCNA_00532at 544.621 kb on - strand, within CCNA_00532at 544.661 kb on - strand, within CCNA_00532at 544.678 kb on + strand, within CCNA_00532at 544.747 kb on + strand, within CCNA_00532at 544.755 kb on - strandat 544.755 kb on - strandat 544.755 kb on - strandat 544.757 kb on + strandat 544.758 kb on + strandat 544.765 kb on - strandat 544.767 kb on - strandat 544.771 kb on + strandat 544.779 kb on - strandat 544.799 kb on - strandat 544.801 kb on + strandat 544.836 kb on + strandat 544.839 kb on - strandat 544.844 kb on - strandat 544.844 kb on - strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.868 kb on + strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.871 kb on - strandat 544.894 kb on + strandat 544.909 kb on - strandat 544.910 kb on - strandat 544.938 kb on + strandat 544.943 kb on + strandat 544.943 kb on + strandat 544.946 kb on - strandat 544.951 kb on - strandat 544.965 kb on + strandat 544.983 kb on - strandat 544.983 kb on - strandat 544.988 kb on - strandat 544.991 kb on + strandat 544.993 kb on - strandat 544.993 kb on - strandat 545.045 kb on + strand, within CCNA_00533at 545.045 kb on + strand, within CCNA_00533at 545.045 kb on + strand, within CCNA_00533at 545.052 kb on + strand, within CCNA_00533at 545.077 kb on + strand, within CCNA_00533at 545.077 kb on + strand, within CCNA_00533at 545.104 kb on + strand, within CCNA_00533at 545.104 kb on + strand, within CCNA_00533at 545.110 kb on + strand, within CCNA_00533at 545.123 kb on + strand, within CCNA_00533at 545.123 kb on + strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.131 kb on - strand, within CCNA_00533at 545.136 kb on - strand, within CCNA_00533at 545.143 kb on - strand, within CCNA_00533at 545.143 kb on - strand, within CCNA_00533at 545.167 kb on - strand, within CCNA_00533at 545.225 kb on + strand, within CCNA_00533at 545.233 kb on - strand, within CCNA_00533at 545.233 kb on - strand, within CCNA_00533at 545.281 kb on + strand, within CCNA_00533at 545.281 kb on + strand, within CCNA_00533at 545.284 kb on - strand, within CCNA_00533at 545.284 kb on - strand, within CCNA_00533at 545.299 kb on - strand, within CCNA_00533at 545.299 kb on - strand, within CCNA_00533at 545.337 kb on - strand, within CCNA_00533at 545.342 kb on - strand, within CCNA_00533at 545.392 kb on - strand, within CCNA_00533at 545.392 kb on - strandat 545.404 kb on + strand, within CCNA_00533at 545.417 kb on - strand, within CCNA_00533at 545.452 kb on - strand, within CCNA_00533at 545.483 kb on - strand, within CCNA_00533at 545.506 kb on + strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.572 kb on - strand, within CCNA_00533at 545.595 kb on + strand, within CCNA_00533at 545.603 kb on - strand, within CCNA_00533at 545.618 kb on + strand, within CCNA_00533at 545.655 kb on + strand, within CCNA_00533at 545.664 kb on - strand, within CCNA_00533at 545.664 kb on - strand, within CCNA_00533at 545.673 kb on + strand, within CCNA_00533at 545.673 kb on + strand, within CCNA_00533at 545.691 kb on - strand, within CCNA_00533at 545.696 kb on + strand, within CCNA_00533at 545.704 kb on - strand, within CCNA_00533at 545.704 kb on - strand, within CCNA_00533at 545.707 kb on + strand, within CCNA_00533at 545.713 kb on - strand, within CCNA_00533at 545.734 kb on + strand, within CCNA_00533at 545.734 kb on - strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.742 kb on + strand, within CCNA_00533at 545.743 kb on + strand, within CCNA_00533at 545.750 kb on - strand, within CCNA_00533at 545.778 kb on - strand, within CCNA_00533at 545.780 kb on + strand, within CCNA_00533at 545.780 kb on + strand, within CCNA_00533at 545.785 kb on + strand, within CCNA_00533at 545.788 kb on - strand, within CCNA_00533at 545.788 kb on - strand, within CCNA_00533at 545.793 kb on - strand, within CCNA_00533at 545.797 kb on - strand, within CCNA_00533at 545.798 kb on - strand, within CCNA_00533at 545.803 kb on + strand, within CCNA_00533at 545.816 kb on - strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533at 545.838 kb on + strand, within CCNA_00533

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days
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543,625 + -0.6
543,633 - -0.6
543,684 + -0.5
543,692 - -1.2
543,692 - +1.1
543,692 - -0.6
543,705 + -1.8
543,705 + -0.0
543,706 + -0.3
543,728 + +1.2
543,736 - -2.7
543,746 + -1.9
543,746 + +1.4
543,754 - -2.0
543,754 - -1.0
543,774 + -3.3
543,827 + +1.1
543,828 + +2.5
543,893 + -1.2
543,923 + +1.2
543,941 - +0.7
543,947 + +1.6
543,955 - +0.8
543,969 + -0.6
543,974 + -3.4
543,982 - +1.3
543,982 - -1.6
543,983 - +0.3
543,993 + -0.5
543,993 + -0.6
543,993 + +1.1
544,011 - -1.4
544,026 + +0.3
544,026 + -0.5
544,034 - +0.1
544,039 + +0.6
544,044 + CCNA_00532 0.10 +2.3
544,047 - CCNA_00532 0.11 +2.4
544,085 + CCNA_00532 0.15 -2.0
544,098 + CCNA_00532 0.16 -2.8
544,114 - CCNA_00532 0.18 +0.7
544,116 - CCNA_00532 0.18 +0.7
544,142 - CCNA_00532 0.21 -0.4
544,144 - CCNA_00532 0.22 +1.8
544,144 - CCNA_00532 0.22 +0.1
544,149 - CCNA_00532 0.22 +0.7
544,163 + CCNA_00532 0.24 -1.3
544,163 + CCNA_00532 0.24 +0.1
544,163 + CCNA_00532 0.24 -2.7
544,163 + CCNA_00532 0.24 +1.4
544,166 - CCNA_00532 0.24 +2.5
544,171 - CCNA_00532 0.25 -2.2
544,171 - CCNA_00532 0.25 +0.6
544,171 - CCNA_00532 0.25 +1.5
544,171 - CCNA_00532 0.25 -0.9
544,171 - CCNA_00532 0.25 -0.6
544,171 - CCNA_00532 0.25 +1.7
544,196 - +2.7
544,220 + CCNA_00532 0.30 +0.3
544,247 - CCNA_00532 0.33 +1.7
544,320 - CCNA_00532 0.41 +1.8
544,320 - CCNA_00532 0.41 -2.5
544,351 - CCNA_00532 0.45 +0.4
544,408 - CCNA_00532 0.51 +0.9
544,421 + CCNA_00532 0.53 -0.2
544,429 - CCNA_00532 0.54 -0.9
544,429 - CCNA_00532 0.54 -1.8
544,429 - CCNA_00532 0.54 +1.2
544,472 + CCNA_00532 0.58 +0.3
544,502 + CCNA_00532 0.62 +0.2
544,531 + CCNA_00532 0.65 +0.3
544,545 - CCNA_00532 0.67 +2.5
544,556 - CCNA_00532 0.68 +2.7
544,608 + CCNA_00532 0.74 -1.9
544,608 + CCNA_00532 0.74 -0.1
544,616 - CCNA_00532 0.75 -3.1
544,621 - CCNA_00532 0.75 -0.1
544,661 - CCNA_00532 0.80 +2.4
544,678 + CCNA_00532 0.81 -1.2
544,747 + CCNA_00532 0.89 -0.1
544,755 - -0.1
544,755 - +3.8
544,755 - -0.3
544,757 + +1.6
544,758 + -1.0
544,765 - +0.5
544,767 - +2.7
544,771 + -2.0
544,779 - +0.6
544,799 - -1.6
544,801 + -1.3
544,836 + -0.9
544,839 - +1.8
544,844 - -0.3
544,844 - -0.8
544,863 + +1.1
544,863 + +0.1
544,868 + +0.1
544,871 - +1.8
544,871 - +0.4
544,871 - +0.4
544,871 - -0.9
544,871 - +0.7
544,894 + -1.3
544,909 - -0.9
544,910 - -1.3
544,938 + -2.2
544,943 + -2.4
544,943 + -1.2
544,946 - -1.4
544,951 - -1.6
544,965 + -1.6
544,983 - +0.8
544,983 - +0.5
544,988 - -0.9
544,991 + +2.5
544,993 - -2.5
544,993 - -1.9
545,045 + CCNA_00533 0.14 +0.1
545,045 + CCNA_00533 0.14 -0.1
545,045 + CCNA_00533 0.14 -2.0
545,052 + CCNA_00533 0.14 -0.8
545,077 + CCNA_00533 0.16 -1.0
545,077 + CCNA_00533 0.16 +1.7
545,104 + CCNA_00533 0.18 -3.0
545,104 + CCNA_00533 0.18 -1.8
545,110 + CCNA_00533 0.19 +2.9
545,123 + CCNA_00533 0.20 -1.9
545,123 + CCNA_00533 0.20 -0.8
545,131 - CCNA_00533 0.20 -2.3
545,131 - CCNA_00533 0.20 +2.7
545,131 - CCNA_00533 0.20 +0.6
545,131 - CCNA_00533 0.20 -0.1
545,136 - CCNA_00533 0.20 -2.3
545,143 - CCNA_00533 0.21 -1.4
545,143 - CCNA_00533 0.21 +2.6
545,167 - CCNA_00533 0.23 -3.9
545,225 + CCNA_00533 0.27 -0.3
545,233 - CCNA_00533 0.28 +0.4
545,233 - CCNA_00533 0.28 -2.3
545,281 + CCNA_00533 0.31 -0.8
545,281 + CCNA_00533 0.31 +2.7
545,284 - CCNA_00533 0.32 -1.2
545,284 - CCNA_00533 0.32 -1.2
545,299 - CCNA_00533 0.33 +0.6
545,299 - CCNA_00533 0.33 +0.0
545,337 - CCNA_00533 0.36 +0.0
545,342 - CCNA_00533 0.36 -2.1
545,392 - CCNA_00533 0.40 +0.1
545,392 - -0.1
545,404 + CCNA_00533 0.41 -1.6
545,417 - CCNA_00533 0.42 -0.3
545,452 - CCNA_00533 0.44 +0.6
545,483 - CCNA_00533 0.47 -2.3
545,506 + CCNA_00533 0.48 -1.5
545,572 - CCNA_00533 0.53 -0.5
545,572 - CCNA_00533 0.53 -0.0
545,572 - CCNA_00533 0.53 +0.2
545,595 + CCNA_00533 0.55 +0.4
545,603 - CCNA_00533 0.56 +0.3
545,618 + CCNA_00533 0.57 +0.3
545,655 + CCNA_00533 0.60 -2.0
545,664 - CCNA_00533 0.60 +0.8
545,664 - CCNA_00533 0.60 +1.1
545,673 + CCNA_00533 0.61 -1.0
545,673 + CCNA_00533 0.61 +0.1
545,691 - CCNA_00533 0.62 -0.8
545,696 + CCNA_00533 0.63 -0.5
545,704 - CCNA_00533 0.63 -2.0
545,704 - CCNA_00533 0.63 +0.5
545,707 + CCNA_00533 0.64 -2.9
545,713 - CCNA_00533 0.64 -1.4
545,734 + CCNA_00533 0.66 +0.3
545,734 - CCNA_00533 0.66 -2.0
545,742 + CCNA_00533 0.66 -2.1
545,742 + CCNA_00533 0.66 +0.1
545,742 + CCNA_00533 0.66 -0.9
545,743 + CCNA_00533 0.66 -2.6
545,750 - CCNA_00533 0.67 +0.1
545,778 - CCNA_00533 0.69 -2.2
545,780 + CCNA_00533 0.69 +1.9
545,780 + CCNA_00533 0.69 -1.4
545,785 + CCNA_00533 0.70 +0.1
545,788 - CCNA_00533 0.70 -3.9
545,788 - CCNA_00533 0.70 +3.0
545,793 - CCNA_00533 0.70 +0.4
545,797 - CCNA_00533 0.70 +0.1
545,798 - CCNA_00533 0.71 +0.1
545,803 + CCNA_00533 0.71 +2.0
545,816 - CCNA_00533 0.72 -1.4
545,838 + CCNA_00533 0.74 -1.6
545,838 + CCNA_00533 0.74 -1.5
545,838 + CCNA_00533 0.74 +0.1
545,838 + CCNA_00533 0.74 +0.8
545,838 + CCNA_00533 0.74 +0.4

Or see this region's nucleotide sequence