Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00470

Experiment: PYE 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03922 and CCNA_00470 overlap by 71 nucleotidesCCNA_00470 and CCNA_00471 are separated by 26 nucleotidesCCNA_00471 and CCNA_00472 overlap by 35 nucleotides CCNA_03922: CCNA_03922 - hypothetical protein, at 483,798 to 484,859 _03922 CCNA_00470: CCNA_00470 - O-antigen polymerase, at 484,789 to 486,132 _00470 CCNA_00471: CCNA_00471 - GDP-L-fucose synthase, at 486,159 to 487,127 _00471 CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169 _00472 Position (kb) 484 485 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 484.896 kb on - strandat 484.922 kb on + strandat 484.935 kb on - strand, within CCNA_00470at 485.030 kb on + strand, within CCNA_00470at 485.047 kb on + strand, within CCNA_00470at 485.108 kb on + strand, within CCNA_00470at 485.116 kb on - strand, within CCNA_00470at 485.139 kb on - strand, within CCNA_00470at 485.278 kb on - strand, within CCNA_00470at 485.289 kb on + strand, within CCNA_00470at 485.338 kb on - strand, within CCNA_00470at 485.338 kb on - strand, within CCNA_00470at 485.345 kb on + strand, within CCNA_00470at 485.399 kb on - strand, within CCNA_00470at 485.414 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.424 kb on + strand, within CCNA_00470at 485.430 kb on - strand, within CCNA_00470at 485.457 kb on - strand, within CCNA_00470at 485.464 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.509 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.517 kb on - strand, within CCNA_00470at 485.532 kb on - strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.561 kb on - strand, within CCNA_00470at 485.580 kb on - strand, within CCNA_00470at 485.589 kb on + strand, within CCNA_00470at 485.589 kb on + strand, within CCNA_00470at 485.665 kb on + strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.680 kb on - strand, within CCNA_00470at 485.859 kb on - strand, within CCNA_00470at 485.879 kb on - strand, within CCNA_00470at 485.925 kb on + strand, within CCNA_00470at 486.003 kb on + strandat 486.013 kb on + strandat 486.054 kb on - strandat 486.078 kb on + strandat 486.111 kb on + strandat 486.119 kb on - strandat 486.131 kb on + strandat 486.134 kb on - strandat 486.227 kb on + strandat 486.235 kb on - strandat 486.235 kb on - strandat 486.250 kb on - strandat 486.250 kb on - strandat 486.255 kb on + strandat 486.258 kb on - strand, within CCNA_00471at 486.274 kb on + strandat 486.307 kb on + strand, within CCNA_00471at 486.315 kb on + strand, within CCNA_00471at 486.328 kb on - strand, within CCNA_00471at 486.344 kb on + strand, within CCNA_00471at 486.345 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.384 kb on - strand, within CCNA_00471at 486.389 kb on - strand, within CCNA_00471at 486.402 kb on - strand, within CCNA_00471at 486.444 kb on + strand, within CCNA_00471at 486.450 kb on - strand, within CCNA_00471at 486.555 kb on - strand, within CCNA_00471at 486.591 kb on + strand, within CCNA_00471at 486.599 kb on - strand, within CCNA_00471at 486.609 kb on - strand, within CCNA_00471at 486.614 kb on - strand, within CCNA_00471at 486.626 kb on + strand, within CCNA_00471at 486.626 kb on + strand, within CCNA_00471at 486.626 kb on - strand, within CCNA_00471at 486.636 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.639 kb on - strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.652 kb on + strand, within CCNA_00471at 486.692 kb on + strand, within CCNA_00471at 486.693 kb on + strand, within CCNA_00471at 486.703 kb on + strand, within CCNA_00471at 486.705 kb on + strand, within CCNA_00471at 486.721 kb on - strand, within CCNA_00471at 486.742 kb on + strand, within CCNA_00471at 486.748 kb on + strand, within CCNA_00471at 486.748 kb on + strand, within CCNA_00471at 486.751 kb on - strand, within CCNA_00471at 486.774 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.795 kb on + strand, within CCNA_00471at 486.803 kb on - strand, within CCNA_00471at 486.803 kb on - strand, within CCNA_00471at 486.885 kb on + strand, within CCNA_00471at 486.914 kb on - strand, within CCNA_00471at 486.921 kb on + strand, within CCNA_00471at 486.930 kb on + strand, within CCNA_00471at 486.956 kb on - strand, within CCNA_00471at 486.964 kb on - strand, within CCNA_00471at 486.969 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days
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484,896 - -0.3
484,922 + -2.0
484,935 - CCNA_00470 0.11 +1.4
485,030 + CCNA_00470 0.18 -1.2
485,047 + CCNA_00470 0.19 -1.7
485,108 + CCNA_00470 0.24 -0.3
485,116 - CCNA_00470 0.24 +1.6
485,139 - CCNA_00470 0.26 +1.9
485,278 - CCNA_00470 0.36 +0.6
485,289 + CCNA_00470 0.37 +2.8
485,338 - CCNA_00470 0.41 +1.3
485,338 - CCNA_00470 0.41 +1.0
485,345 + CCNA_00470 0.41 +1.6
485,399 - CCNA_00470 0.45 -3.0
485,414 - CCNA_00470 0.47 +4.6
485,416 - CCNA_00470 0.47 +2.2
485,416 - CCNA_00470 0.47 +0.7
485,416 - CCNA_00470 0.47 -2.2
485,424 + CCNA_00470 0.47 -0.8
485,430 - CCNA_00470 0.48 +2.9
485,457 - CCNA_00470 0.50 +1.9
485,464 + CCNA_00470 0.50 +2.0
485,469 + CCNA_00470 0.51 +1.6
485,469 + CCNA_00470 0.51 -0.9
485,477 - CCNA_00470 0.51 +0.6
485,477 - CCNA_00470 0.51 +4.4
485,477 - CCNA_00470 0.51 +0.6
485,477 - CCNA_00470 0.51 +0.1
485,504 + CCNA_00470 0.53 +1.1
485,506 + CCNA_00470 0.53 -0.9
485,506 + CCNA_00470 0.53 -2.1
485,509 - CCNA_00470 0.54 -1.4
485,512 - CCNA_00470 0.54 +1.2
485,512 - CCNA_00470 0.54 +0.1
485,512 - CCNA_00470 0.54 +2.6
485,512 - CCNA_00470 0.54 +2.2
485,514 - CCNA_00470 0.54 +2.6
485,517 - CCNA_00470 0.54 +0.5
485,532 - CCNA_00470 0.55 -1.4
485,553 + CCNA_00470 0.57 +0.3
485,561 - CCNA_00470 0.57 -3.8
485,580 - CCNA_00470 0.59 +2.6
485,589 + CCNA_00470 0.60 +0.6
485,589 + CCNA_00470 0.60 +0.6
485,665 + CCNA_00470 0.65 +0.1
485,673 - CCNA_00470 0.66 +3.7
485,673 - CCNA_00470 0.66 -0.7
485,673 - CCNA_00470 0.66 +0.4
485,680 - CCNA_00470 0.66 +0.6
485,859 - CCNA_00470 0.80 +2.8
485,879 - CCNA_00470 0.81 +0.9
485,925 + CCNA_00470 0.85 +2.6
486,003 + +2.6
486,013 + -0.8
486,054 - -1.7
486,078 + +2.6
486,111 + -0.0
486,119 - -2.1
486,131 + +2.0
486,134 - +1.0
486,227 + +6.1
486,235 - +0.3
486,235 - +1.3
486,250 - +2.7
486,250 - +1.4
486,255 + +2.1
486,258 - CCNA_00471 0.10 +1.3
486,274 + -0.7
486,307 + CCNA_00471 0.15 +0.4
486,315 + CCNA_00471 0.16 -2.5
486,328 - CCNA_00471 0.17 +1.1
486,344 + CCNA_00471 0.19 -0.2
486,345 + CCNA_00471 0.19 +1.1
486,376 + CCNA_00471 0.22 +2.1
486,376 + CCNA_00471 0.22 +0.6
486,376 + CCNA_00471 0.22 +1.4
486,384 - CCNA_00471 0.23 +0.9
486,389 - CCNA_00471 0.24 +2.0
486,402 - CCNA_00471 0.25 +0.6
486,444 + CCNA_00471 0.29 +0.2
486,450 - CCNA_00471 0.30 +2.6
486,555 - CCNA_00471 0.41 +2.4
486,591 + CCNA_00471 0.45 +0.1
486,599 - CCNA_00471 0.45 +2.6
486,609 - CCNA_00471 0.46 +1.8
486,614 - CCNA_00471 0.47 +2.2
486,626 + CCNA_00471 0.48 -0.4
486,626 + CCNA_00471 0.48 -0.2
486,626 - CCNA_00471 0.48 +2.4
486,636 + CCNA_00471 0.49 +0.3
486,637 + CCNA_00471 0.49 +1.7
486,637 + CCNA_00471 0.49 -0.7
486,639 - CCNA_00471 0.50 +2.1
486,644 - CCNA_00471 0.50 +1.2
486,644 - CCNA_00471 0.50 -2.0
486,645 - CCNA_00471 0.50 +2.8
486,645 - CCNA_00471 0.50 +2.6
486,652 + CCNA_00471 0.51 -1.2
486,692 + CCNA_00471 0.55 +0.6
486,693 + CCNA_00471 0.55 -0.8
486,703 + CCNA_00471 0.56 +1.1
486,705 + CCNA_00471 0.56 +0.3
486,721 - CCNA_00471 0.58 +1.1
486,742 + CCNA_00471 0.60 +0.6
486,748 + CCNA_00471 0.61 +1.4
486,748 + CCNA_00471 0.61 +1.0
486,751 - CCNA_00471 0.61 +2.0
486,774 - CCNA_00471 0.63 +0.1
486,779 - CCNA_00471 0.64 +2.2
486,779 - CCNA_00471 0.64 +1.9
486,779 - CCNA_00471 0.64 +1.1
486,795 + CCNA_00471 0.66 +2.6
486,803 - CCNA_00471 0.66 +2.2
486,803 - CCNA_00471 0.66 +2.2
486,885 + CCNA_00471 0.75 -0.7
486,914 - CCNA_00471 0.78 +1.5
486,921 + CCNA_00471 0.79 +2.6
486,930 + CCNA_00471 0.80 -1.9
486,956 - CCNA_00471 0.82 +0.7
486,964 - CCNA_00471 0.83 +1.3
486,969 - CCNA_00471 0.84 +0.9
486,971 - CCNA_00471 0.84 +2.1
486,971 - CCNA_00471 0.84 +2.0
486,971 - CCNA_00471 0.84 +2.2

Or see this region's nucleotide sequence