Experiment: PYE 25C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00290 and CCNA_00291 are separated by 163 nucleotides CCNA_00291 and CCNA_00292 are separated by 144 nucleotides
CCNA_00290: CCNA_00290 - autotransporter protein, at 301,048 to 304,305
_00290
CCNA_00291: CCNA_00291 - phosphate regulon sensor protein phoR, at 304,469 to 305,884
_00291
CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462
_00292
Position (kb)
304
305
306 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 303.500 kb on + strand, within CCNA_00290 at 303.503 kb on - strand, within CCNA_00290 at 303.510 kb on + strand, within CCNA_00290 at 303.514 kb on - strand, within CCNA_00290 at 303.516 kb on - strand, within CCNA_00290 at 303.524 kb on + strand, within CCNA_00290 at 303.530 kb on + strand, within CCNA_00290 at 303.538 kb on - strand, within CCNA_00290 at 303.571 kb on + strand, within CCNA_00290 at 303.579 kb on - strand, within CCNA_00290 at 303.579 kb on - strand, within CCNA_00290 at 303.586 kb on - strand, within CCNA_00290 at 303.587 kb on - strand, within CCNA_00290 at 303.688 kb on - strand, within CCNA_00290 at 303.700 kb on - strand, within CCNA_00290 at 303.702 kb on + strand, within CCNA_00290 at 303.702 kb on - strand, within CCNA_00290 at 303.719 kb on + strand, within CCNA_00290 at 303.727 kb on - strand, within CCNA_00290 at 303.735 kb on + strand, within CCNA_00290 at 303.735 kb on - strand, within CCNA_00290 at 303.766 kb on + strand, within CCNA_00290 at 303.855 kb on + strand, within CCNA_00290 at 303.874 kb on + strand, within CCNA_00290 at 303.874 kb on + strand, within CCNA_00290 at 303.874 kb on + strand, within CCNA_00290 at 303.882 kb on - strand, within CCNA_00290 at 303.882 kb on - strand, within CCNA_00290 at 303.882 kb on - strand, within CCNA_00290 at 303.885 kb on + strand, within CCNA_00290 at 303.893 kb on - strand, within CCNA_00290 at 303.895 kb on - strand, within CCNA_00290 at 303.919 kb on + strand, within CCNA_00290 at 303.945 kb on - strand, within CCNA_00290 at 303.953 kb on + strand, within CCNA_00290 at 304.031 kb on - strand at 304.098 kb on + strand at 304.165 kb on + strand at 304.165 kb on + strand at 304.173 kb on - strand at 304.173 kb on - strand at 304.246 kb on - strand at 304.280 kb on + strand at 304.282 kb on - strand at 304.360 kb on + strand at 304.379 kb on + strand at 304.383 kb on + strand at 304.387 kb on - strand at 304.387 kb on - strand at 304.413 kb on - strand at 304.413 kb on - strand at 304.416 kb on + strand at 304.445 kb on + strand at 304.469 kb on - strand at 304.477 kb on + strand at 304.487 kb on + strand at 304.487 kb on + strand at 304.487 kb on + strand at 304.487 kb on + strand at 304.487 kb on + strand at 304.495 kb on - strand at 304.495 kb on - strand at 304.495 kb on - strand at 304.495 kb on - strand at 304.495 kb on - strand at 304.504 kb on + strand at 304.527 kb on + strand at 304.532 kb on + strand at 304.553 kb on + strand at 304.553 kb on + strand at 304.561 kb on - strand at 304.598 kb on - strand at 304.626 kb on - strand, within CCNA_00291 at 304.631 kb on - strand, within CCNA_00291 at 304.679 kb on + strand, within CCNA_00291 at 304.692 kb on - strand, within CCNA_00291 at 304.692 kb on - strand, within CCNA_00291 at 304.764 kb on + strand, within CCNA_00291 at 304.810 kb on - strand, within CCNA_00291 at 304.839 kb on - strand, within CCNA_00291 at 304.839 kb on - strand, within CCNA_00291 at 304.845 kb on - strand, within CCNA_00291 at 304.861 kb on + strand, within CCNA_00291 at 304.861 kb on + strand, within CCNA_00291 at 304.869 kb on - strand, within CCNA_00291 at 304.910 kb on + strand, within CCNA_00291 at 304.947 kb on - strand, within CCNA_00291 at 304.955 kb on + strand, within CCNA_00291 at 304.966 kb on + strand, within CCNA_00291 at 304.974 kb on - strand, within CCNA_00291 at 304.975 kb on + strand, within CCNA_00291 at 304.976 kb on + strand, within CCNA_00291 at 304.976 kb on + strand, within CCNA_00291 at 304.976 kb on + strand, within CCNA_00291 at 304.976 kb on + strand, within CCNA_00291 at 304.976 kb on + strand, within CCNA_00291 at 304.980 kb on + strand, within CCNA_00291 at 304.980 kb on + strand, within CCNA_00291 at 304.999 kb on - strand, within CCNA_00291 at 305.033 kb on - strand, within CCNA_00291 at 305.051 kb on - strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.097 kb on + strand, within CCNA_00291 at 305.105 kb on - strand, within CCNA_00291 at 305.155 kb on - strand, within CCNA_00291 at 305.158 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.169 kb on + strand, within CCNA_00291 at 305.177 kb on - strand, within CCNA_00291 at 305.177 kb on - strand, within CCNA_00291 at 305.189 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.206 kb on + strand, within CCNA_00291 at 305.214 kb on - strand, within CCNA_00291 at 305.262 kb on - strand, within CCNA_00291 at 305.269 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.305 kb on + strand, within CCNA_00291 at 305.310 kb on - strand, within CCNA_00291 at 305.313 kb on - strand, within CCNA_00291 at 305.334 kb on + strand, within CCNA_00291 at 305.342 kb on - strand, within CCNA_00291 at 305.342 kb on - strand, within CCNA_00291 at 305.360 kb on + strand, within CCNA_00291 at 305.381 kb on - strand, within CCNA_00291 at 305.402 kb on + strand, within CCNA_00291 at 305.402 kb on + strand, within CCNA_00291 at 305.404 kb on + strand, within CCNA_00291 at 305.412 kb on - strand, within CCNA_00291 at 305.503 kb on - strand, within CCNA_00291 at 305.577 kb on - strand, within CCNA_00291 at 305.633 kb on + strand, within CCNA_00291 at 305.687 kb on + strand, within CCNA_00291 at 305.717 kb on + strand, within CCNA_00291 at 305.717 kb on + strand, within CCNA_00291 at 305.719 kb on - strand at 305.725 kb on - strand, within CCNA_00291 at 305.728 kb on + strand, within CCNA_00291 at 305.762 kb on + strand at 305.783 kb on + strand at 305.783 kb on + strand at 305.783 kb on + strand at 305.796 kb on - strand at 305.807 kb on + strand at 305.824 kb on + strand at 305.832 kb on - strand at 305.921 kb on + strand at 305.921 kb on + strand at 305.936 kb on + strand at 305.944 kb on - strand at 305.964 kb on - strand at 305.995 kb on + strand at 306.003 kb on - strand at 306.014 kb on + strand at 306.014 kb on + strand at 306.014 kb on + strand at 306.015 kb on + strand at 306.022 kb on - strand at 306.022 kb on - strand at 306.072 kb on - strand at 306.100 kb on + strand at 306.151 kb on + strand at 306.424 kb on + strand, within CCNA_00292 at 306.471 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292 at 306.476 kb on + strand, within CCNA_00292
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days remove 303,500 + CCNA_00290 0.75 +0.9 303,503 - CCNA_00290 0.75 -0.7 303,510 + CCNA_00290 0.76 -1.5 303,514 - CCNA_00290 0.76 +1.4 303,516 - CCNA_00290 0.76 -1.2 303,524 + CCNA_00290 0.76 +2.5 303,530 + CCNA_00290 0.76 +0.5 303,538 - CCNA_00290 0.76 +1.1 303,571 + CCNA_00290 0.77 -2.0 303,579 - CCNA_00290 0.78 +1.0 303,579 - CCNA_00290 0.78 +0.8 303,586 - CCNA_00290 0.78 +1.0 303,587 - CCNA_00290 0.78 -0.1 303,688 - CCNA_00290 0.81 +0.2 303,700 - CCNA_00290 0.81 +1.1 303,702 + CCNA_00290 0.81 +2.5 303,702 - CCNA_00290 0.81 -0.1 303,719 + CCNA_00290 0.82 +0.9 303,727 - CCNA_00290 0.82 +0.7 303,735 + CCNA_00290 0.82 -0.1 303,735 - CCNA_00290 0.82 +0.7 303,766 + CCNA_00290 0.83 +0.2 303,855 + CCNA_00290 0.86 +1.5 303,874 + CCNA_00290 0.87 +2.0 303,874 + CCNA_00290 0.87 -0.8 303,874 + CCNA_00290 0.87 +2.5 303,882 - CCNA_00290 0.87 +0.6 303,882 - CCNA_00290 0.87 +0.3 303,882 - CCNA_00290 0.87 +0.4 303,885 + CCNA_00290 0.87 +2.5 303,893 - CCNA_00290 0.87 +0.6 303,895 - CCNA_00290 0.87 +2.4 303,919 + CCNA_00290 0.88 -1.3 303,945 - CCNA_00290 0.89 +0.0 303,953 + CCNA_00290 0.89 -1.2 304,031 - +2.7 304,098 + -1.7 304,165 + -0.8 304,165 + +0.9 304,173 - +1.3 304,173 - +1.1 304,246 - +0.9 304,280 + -1.5 304,282 - +0.9 304,360 + -1.5 304,379 + -2.5 304,383 + -0.5 304,387 - -1.9 304,387 - -0.9 304,413 - -0.3 304,413 - -0.3 304,416 + -0.4 304,445 + +0.7 304,469 - -1.1 304,477 + +0.6 304,487 + +0.6 304,487 + +2.1 304,487 + -2.3 304,487 + -3.8 304,487 + -0.7 304,495 - -1.0 304,495 - -0.8 304,495 - +0.7 304,495 - -3.4 304,495 - -0.3 304,504 + -1.7 304,527 + -0.3 304,532 + +0.6 304,553 + -0.5 304,553 + -0.5 304,561 - +2.5 304,598 - -1.0 304,626 - CCNA_00291 0.11 -1.4 304,631 - CCNA_00291 0.11 +1.5 304,679 + CCNA_00291 0.15 -3.3 304,692 - CCNA_00291 0.16 -0.2 304,692 - CCNA_00291 0.16 -1.7 304,764 + CCNA_00291 0.21 +0.9 304,810 - CCNA_00291 0.24 +2.5 304,839 - CCNA_00291 0.26 -1.1 304,839 - CCNA_00291 0.26 +2.5 304,845 - CCNA_00291 0.27 -1.6 304,861 + CCNA_00291 0.28 -0.7 304,861 + CCNA_00291 0.28 -2.0 304,869 - CCNA_00291 0.28 -2.0 304,910 + CCNA_00291 0.31 -1.2 304,947 - CCNA_00291 0.34 +0.9 304,955 + CCNA_00291 0.34 -1.7 304,966 + CCNA_00291 0.35 -0.2 304,974 - CCNA_00291 0.36 -0.5 304,975 + CCNA_00291 0.36 -1.5 304,976 + CCNA_00291 0.36 -1.9 304,976 + CCNA_00291 0.36 -2.0 304,976 + CCNA_00291 0.36 -2.7 304,976 + CCNA_00291 0.36 -1.1 304,976 + CCNA_00291 0.36 +2.2 304,980 + CCNA_00291 0.36 +2.3 304,980 + CCNA_00291 0.36 -2.1 304,999 - CCNA_00291 0.37 +2.5 305,033 - CCNA_00291 0.40 -1.3 305,051 - CCNA_00291 0.41 -1.3 305,097 + CCNA_00291 0.44 -1.6 305,097 + CCNA_00291 0.44 -3.7 305,097 + CCNA_00291 0.44 -2.4 305,105 - CCNA_00291 0.45 -1.1 305,155 - CCNA_00291 0.48 -1.7 305,158 + CCNA_00291 0.49 +0.1 305,169 + CCNA_00291 0.49 -2.1 305,169 + CCNA_00291 0.49 -1.9 305,169 + CCNA_00291 0.49 -2.1 305,169 + CCNA_00291 0.49 -0.7 305,169 + CCNA_00291 0.49 -2.9 305,169 + CCNA_00291 0.49 -0.1 305,177 - CCNA_00291 0.50 -0.5 305,177 - CCNA_00291 0.50 -3.2 305,189 + CCNA_00291 0.51 -2.6 305,206 + CCNA_00291 0.52 -2.2 305,206 + CCNA_00291 0.52 -2.5 305,206 + CCNA_00291 0.52 -1.0 305,206 + CCNA_00291 0.52 -3.6 305,206 + CCNA_00291 0.52 +0.1 305,214 - CCNA_00291 0.53 +0.4 305,262 - CCNA_00291 0.56 -1.7 305,269 + CCNA_00291 0.56 -0.9 305,305 + CCNA_00291 0.59 -1.2 305,305 + CCNA_00291 0.59 -1.3 305,305 + CCNA_00291 0.59 +0.5 305,310 - CCNA_00291 0.59 -2.4 305,313 - CCNA_00291 0.60 -2.5 305,334 + CCNA_00291 0.61 +0.2 305,342 - CCNA_00291 0.62 +2.2 305,342 - CCNA_00291 0.62 +0.5 305,360 + CCNA_00291 0.63 +0.9 305,381 - CCNA_00291 0.64 -1.0 305,402 + CCNA_00291 0.66 -3.5 305,402 + CCNA_00291 0.66 -1.7 305,404 + CCNA_00291 0.66 -1.4 305,412 - CCNA_00291 0.67 -0.3 305,503 - CCNA_00291 0.73 -0.1 305,577 - CCNA_00291 0.78 +1.5 305,633 + CCNA_00291 0.82 -0.3 305,687 + CCNA_00291 0.86 -2.7 305,717 + CCNA_00291 0.88 -1.3 305,717 + CCNA_00291 0.88 -1.1 305,719 - -1.4 305,725 - CCNA_00291 0.89 -2.0 305,728 + CCNA_00291 0.89 +0.8 305,762 + -0.6 305,783 + +2.1 305,783 + -0.5 305,783 + -0.6 305,796 - -1.1 305,807 + -2.0 305,824 + +1.6 305,832 - +1.5 305,921 + -1.3 305,921 + +1.5 305,936 + -0.5 305,944 - -0.7 305,964 - +0.9 305,995 + +1.4 306,003 - -1.4 306,014 + +0.4 306,014 + +1.5 306,014 + -2.8 306,015 + +1.2 306,022 - -0.3 306,022 - +0.3 306,072 - -1.9 306,100 + -0.1 306,151 + -3.6 306,424 + CCNA_00292 0.28 -2.7 306,471 + CCNA_00292 0.31 +2.1 306,476 + CCNA_00292 0.31 +1.2 306,476 + CCNA_00292 0.31 -1.5
Or see this region's nucleotide sequence