Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00291

Experiment: PYE 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00290 and CCNA_00291 are separated by 163 nucleotidesCCNA_00291 and CCNA_00292 are separated by 144 nucleotides CCNA_00290: CCNA_00290 - autotransporter protein, at 301,048 to 304,305 _00290 CCNA_00291: CCNA_00291 - phosphate regulon sensor protein phoR, at 304,469 to 305,884 _00291 CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462 _00292 Position (kb) 304 305 306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 303.500 kb on + strand, within CCNA_00290at 303.503 kb on - strand, within CCNA_00290at 303.510 kb on + strand, within CCNA_00290at 303.514 kb on - strand, within CCNA_00290at 303.516 kb on - strand, within CCNA_00290at 303.524 kb on + strand, within CCNA_00290at 303.530 kb on + strand, within CCNA_00290at 303.538 kb on - strand, within CCNA_00290at 303.571 kb on + strand, within CCNA_00290at 303.579 kb on - strand, within CCNA_00290at 303.579 kb on - strand, within CCNA_00290at 303.586 kb on - strand, within CCNA_00290at 303.587 kb on - strand, within CCNA_00290at 303.688 kb on - strand, within CCNA_00290at 303.700 kb on - strand, within CCNA_00290at 303.702 kb on + strand, within CCNA_00290at 303.702 kb on - strand, within CCNA_00290at 303.719 kb on + strand, within CCNA_00290at 303.727 kb on - strand, within CCNA_00290at 303.735 kb on + strand, within CCNA_00290at 303.735 kb on - strand, within CCNA_00290at 303.766 kb on + strand, within CCNA_00290at 303.855 kb on + strand, within CCNA_00290at 303.874 kb on + strand, within CCNA_00290at 303.874 kb on + strand, within CCNA_00290at 303.874 kb on + strand, within CCNA_00290at 303.882 kb on - strand, within CCNA_00290at 303.882 kb on - strand, within CCNA_00290at 303.882 kb on - strand, within CCNA_00290at 303.885 kb on + strand, within CCNA_00290at 303.893 kb on - strand, within CCNA_00290at 303.895 kb on - strand, within CCNA_00290at 303.919 kb on + strand, within CCNA_00290at 303.945 kb on - strand, within CCNA_00290at 303.953 kb on + strand, within CCNA_00290at 304.031 kb on - strandat 304.098 kb on + strandat 304.165 kb on + strandat 304.165 kb on + strandat 304.173 kb on - strandat 304.173 kb on - strandat 304.246 kb on - strandat 304.280 kb on + strandat 304.282 kb on - strandat 304.360 kb on + strandat 304.379 kb on + strandat 304.383 kb on + strandat 304.387 kb on - strandat 304.387 kb on - strandat 304.413 kb on - strandat 304.413 kb on - strandat 304.416 kb on + strandat 304.445 kb on + strandat 304.469 kb on - strandat 304.477 kb on + strandat 304.487 kb on + strandat 304.487 kb on + strandat 304.487 kb on + strandat 304.487 kb on + strandat 304.487 kb on + strandat 304.495 kb on - strandat 304.495 kb on - strandat 304.495 kb on - strandat 304.495 kb on - strandat 304.495 kb on - strandat 304.504 kb on + strandat 304.527 kb on + strandat 304.532 kb on + strandat 304.553 kb on + strandat 304.553 kb on + strandat 304.561 kb on - strandat 304.598 kb on - strandat 304.626 kb on - strand, within CCNA_00291at 304.631 kb on - strand, within CCNA_00291at 304.679 kb on + strand, within CCNA_00291at 304.692 kb on - strand, within CCNA_00291at 304.692 kb on - strand, within CCNA_00291at 304.764 kb on + strand, within CCNA_00291at 304.810 kb on - strand, within CCNA_00291at 304.839 kb on - strand, within CCNA_00291at 304.839 kb on - strand, within CCNA_00291at 304.845 kb on - strand, within CCNA_00291at 304.861 kb on + strand, within CCNA_00291at 304.861 kb on + strand, within CCNA_00291at 304.869 kb on - strand, within CCNA_00291at 304.910 kb on + strand, within CCNA_00291at 304.947 kb on - strand, within CCNA_00291at 304.955 kb on + strand, within CCNA_00291at 304.966 kb on + strand, within CCNA_00291at 304.974 kb on - strand, within CCNA_00291at 304.975 kb on + strand, within CCNA_00291at 304.976 kb on + strand, within CCNA_00291at 304.976 kb on + strand, within CCNA_00291at 304.976 kb on + strand, within CCNA_00291at 304.976 kb on + strand, within CCNA_00291at 304.976 kb on + strand, within CCNA_00291at 304.980 kb on + strand, within CCNA_00291at 304.980 kb on + strand, within CCNA_00291at 304.999 kb on - strand, within CCNA_00291at 305.033 kb on - strand, within CCNA_00291at 305.051 kb on - strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.105 kb on - strand, within CCNA_00291at 305.155 kb on - strand, within CCNA_00291at 305.158 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.189 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.262 kb on - strand, within CCNA_00291at 305.269 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.310 kb on - strand, within CCNA_00291at 305.313 kb on - strand, within CCNA_00291at 305.334 kb on + strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.360 kb on + strand, within CCNA_00291at 305.381 kb on - strand, within CCNA_00291at 305.402 kb on + strand, within CCNA_00291at 305.402 kb on + strand, within CCNA_00291at 305.404 kb on + strand, within CCNA_00291at 305.412 kb on - strand, within CCNA_00291at 305.503 kb on - strand, within CCNA_00291at 305.577 kb on - strand, within CCNA_00291at 305.633 kb on + strand, within CCNA_00291at 305.687 kb on + strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.719 kb on - strandat 305.725 kb on - strand, within CCNA_00291at 305.728 kb on + strand, within CCNA_00291at 305.762 kb on + strandat 305.783 kb on + strandat 305.783 kb on + strandat 305.783 kb on + strandat 305.796 kb on - strandat 305.807 kb on + strandat 305.824 kb on + strandat 305.832 kb on - strandat 305.921 kb on + strandat 305.921 kb on + strandat 305.936 kb on + strandat 305.944 kb on - strandat 305.964 kb on - strandat 305.995 kb on + strandat 306.003 kb on - strandat 306.014 kb on + strandat 306.014 kb on + strandat 306.014 kb on + strandat 306.015 kb on + strandat 306.022 kb on - strandat 306.022 kb on - strandat 306.072 kb on - strandat 306.100 kb on + strandat 306.151 kb on + strandat 306.424 kb on + strand, within CCNA_00292at 306.471 kb on + strand, within CCNA_00292at 306.476 kb on + strand, within CCNA_00292at 306.476 kb on + strand, within CCNA_00292

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C survival rep2 28 days
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303,500 + CCNA_00290 0.75 +0.9
303,503 - CCNA_00290 0.75 -0.7
303,510 + CCNA_00290 0.76 -1.5
303,514 - CCNA_00290 0.76 +1.4
303,516 - CCNA_00290 0.76 -1.2
303,524 + CCNA_00290 0.76 +2.5
303,530 + CCNA_00290 0.76 +0.5
303,538 - CCNA_00290 0.76 +1.1
303,571 + CCNA_00290 0.77 -2.0
303,579 - CCNA_00290 0.78 +1.0
303,579 - CCNA_00290 0.78 +0.8
303,586 - CCNA_00290 0.78 +1.0
303,587 - CCNA_00290 0.78 -0.1
303,688 - CCNA_00290 0.81 +0.2
303,700 - CCNA_00290 0.81 +1.1
303,702 + CCNA_00290 0.81 +2.5
303,702 - CCNA_00290 0.81 -0.1
303,719 + CCNA_00290 0.82 +0.9
303,727 - CCNA_00290 0.82 +0.7
303,735 + CCNA_00290 0.82 -0.1
303,735 - CCNA_00290 0.82 +0.7
303,766 + CCNA_00290 0.83 +0.2
303,855 + CCNA_00290 0.86 +1.5
303,874 + CCNA_00290 0.87 +2.0
303,874 + CCNA_00290 0.87 -0.8
303,874 + CCNA_00290 0.87 +2.5
303,882 - CCNA_00290 0.87 +0.6
303,882 - CCNA_00290 0.87 +0.3
303,882 - CCNA_00290 0.87 +0.4
303,885 + CCNA_00290 0.87 +2.5
303,893 - CCNA_00290 0.87 +0.6
303,895 - CCNA_00290 0.87 +2.4
303,919 + CCNA_00290 0.88 -1.3
303,945 - CCNA_00290 0.89 +0.0
303,953 + CCNA_00290 0.89 -1.2
304,031 - +2.7
304,098 + -1.7
304,165 + -0.8
304,165 + +0.9
304,173 - +1.3
304,173 - +1.1
304,246 - +0.9
304,280 + -1.5
304,282 - +0.9
304,360 + -1.5
304,379 + -2.5
304,383 + -0.5
304,387 - -1.9
304,387 - -0.9
304,413 - -0.3
304,413 - -0.3
304,416 + -0.4
304,445 + +0.7
304,469 - -1.1
304,477 + +0.6
304,487 + +0.6
304,487 + +2.1
304,487 + -2.3
304,487 + -3.8
304,487 + -0.7
304,495 - -1.0
304,495 - -0.8
304,495 - +0.7
304,495 - -3.4
304,495 - -0.3
304,504 + -1.7
304,527 + -0.3
304,532 + +0.6
304,553 + -0.5
304,553 + -0.5
304,561 - +2.5
304,598 - -1.0
304,626 - CCNA_00291 0.11 -1.4
304,631 - CCNA_00291 0.11 +1.5
304,679 + CCNA_00291 0.15 -3.3
304,692 - CCNA_00291 0.16 -0.2
304,692 - CCNA_00291 0.16 -1.7
304,764 + CCNA_00291 0.21 +0.9
304,810 - CCNA_00291 0.24 +2.5
304,839 - CCNA_00291 0.26 -1.1
304,839 - CCNA_00291 0.26 +2.5
304,845 - CCNA_00291 0.27 -1.6
304,861 + CCNA_00291 0.28 -0.7
304,861 + CCNA_00291 0.28 -2.0
304,869 - CCNA_00291 0.28 -2.0
304,910 + CCNA_00291 0.31 -1.2
304,947 - CCNA_00291 0.34 +0.9
304,955 + CCNA_00291 0.34 -1.7
304,966 + CCNA_00291 0.35 -0.2
304,974 - CCNA_00291 0.36 -0.5
304,975 + CCNA_00291 0.36 -1.5
304,976 + CCNA_00291 0.36 -1.9
304,976 + CCNA_00291 0.36 -2.0
304,976 + CCNA_00291 0.36 -2.7
304,976 + CCNA_00291 0.36 -1.1
304,976 + CCNA_00291 0.36 +2.2
304,980 + CCNA_00291 0.36 +2.3
304,980 + CCNA_00291 0.36 -2.1
304,999 - CCNA_00291 0.37 +2.5
305,033 - CCNA_00291 0.40 -1.3
305,051 - CCNA_00291 0.41 -1.3
305,097 + CCNA_00291 0.44 -1.6
305,097 + CCNA_00291 0.44 -3.7
305,097 + CCNA_00291 0.44 -2.4
305,105 - CCNA_00291 0.45 -1.1
305,155 - CCNA_00291 0.48 -1.7
305,158 + CCNA_00291 0.49 +0.1
305,169 + CCNA_00291 0.49 -2.1
305,169 + CCNA_00291 0.49 -1.9
305,169 + CCNA_00291 0.49 -2.1
305,169 + CCNA_00291 0.49 -0.7
305,169 + CCNA_00291 0.49 -2.9
305,169 + CCNA_00291 0.49 -0.1
305,177 - CCNA_00291 0.50 -0.5
305,177 - CCNA_00291 0.50 -3.2
305,189 + CCNA_00291 0.51 -2.6
305,206 + CCNA_00291 0.52 -2.2
305,206 + CCNA_00291 0.52 -2.5
305,206 + CCNA_00291 0.52 -1.0
305,206 + CCNA_00291 0.52 -3.6
305,206 + CCNA_00291 0.52 +0.1
305,214 - CCNA_00291 0.53 +0.4
305,262 - CCNA_00291 0.56 -1.7
305,269 + CCNA_00291 0.56 -0.9
305,305 + CCNA_00291 0.59 -1.2
305,305 + CCNA_00291 0.59 -1.3
305,305 + CCNA_00291 0.59 +0.5
305,310 - CCNA_00291 0.59 -2.4
305,313 - CCNA_00291 0.60 -2.5
305,334 + CCNA_00291 0.61 +0.2
305,342 - CCNA_00291 0.62 +2.2
305,342 - CCNA_00291 0.62 +0.5
305,360 + CCNA_00291 0.63 +0.9
305,381 - CCNA_00291 0.64 -1.0
305,402 + CCNA_00291 0.66 -3.5
305,402 + CCNA_00291 0.66 -1.7
305,404 + CCNA_00291 0.66 -1.4
305,412 - CCNA_00291 0.67 -0.3
305,503 - CCNA_00291 0.73 -0.1
305,577 - CCNA_00291 0.78 +1.5
305,633 + CCNA_00291 0.82 -0.3
305,687 + CCNA_00291 0.86 -2.7
305,717 + CCNA_00291 0.88 -1.3
305,717 + CCNA_00291 0.88 -1.1
305,719 - -1.4
305,725 - CCNA_00291 0.89 -2.0
305,728 + CCNA_00291 0.89 +0.8
305,762 + -0.6
305,783 + +2.1
305,783 + -0.5
305,783 + -0.6
305,796 - -1.1
305,807 + -2.0
305,824 + +1.6
305,832 - +1.5
305,921 + -1.3
305,921 + +1.5
305,936 + -0.5
305,944 - -0.7
305,964 - +0.9
305,995 + +1.4
306,003 - -1.4
306,014 + +0.4
306,014 + +1.5
306,014 + -2.8
306,015 + +1.2
306,022 - -0.3
306,022 - +0.3
306,072 - -1.9
306,100 + -0.1
306,151 + -3.6
306,424 + CCNA_00292 0.28 -2.7
306,471 + CCNA_00292 0.31 +2.1
306,476 + CCNA_00292 0.31 +1.2
306,476 + CCNA_00292 0.31 -1.5

Or see this region's nucleotide sequence