Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0006

Experiment: MoYLS4 with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0005 and mgtE are separated by 22 nucleotidesmgtE and nifB are separated by 449 nucleotides DVUA0005: DVUA0005 - universal stress protein family (TIGR), at 6,498 to 7,433 DVUA0005 DVUA0006: mgtE - magnesium transporter MgtE, putative (TIGR), at 7,456 to 8,451 mgtE DVUA0007: nifB - nitrogenase cofactor biosynthesis protein NifB (TIGR), at 8,901 to 10,445 nifB Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.496 kb on + strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.639 kb on + strand, within DVUA0005at 6.639 kb on - strand, within DVUA0005at 6.647 kb on - strand, within DVUA0005at 6.663 kb on + strand, within DVUA0005at 6.686 kb on + strand, within DVUA0005at 6.716 kb on - strand, within DVUA0005at 6.740 kb on + strand, within DVUA0005at 6.832 kb on + strand, within DVUA0005at 6.865 kb on - strand, within DVUA0005at 6.995 kb on + strand, within DVUA0005at 7.016 kb on + strand, within DVUA0005at 7.016 kb on + strand, within DVUA0005at 7.125 kb on + strand, within DVUA0005at 7.140 kb on - strand, within DVUA0005at 7.171 kb on + strand, within DVUA0005at 7.314 kb on - strand, within DVUA0005at 7.358 kb on + strandat 7.362 kb on + strandat 7.365 kb on - strandat 7.518 kb on + strandat 7.526 kb on - strandat 7.729 kb on - strand, within mgtEat 7.736 kb on + strand, within mgtEat 7.855 kb on - strand, within mgtEat 8.000 kb on - strand, within mgtEat 8.071 kb on + strand, within mgtEat 8.072 kb on - strand, within mgtEat 8.152 kb on + strand, within mgtEat 8.160 kb on - strand, within mgtEat 8.251 kb on - strand, within mgtEat 8.404 kb on - strandat 8.643 kb on - strandat 8.695 kb on + strandat 8.741 kb on + strandat 8.762 kb on + strandat 8.785 kb on + strandat 8.841 kb on + strandat 8.849 kb on - strandat 8.931 kb on - strandat 8.931 kb on - strandat 8.933 kb on - strandat 9.042 kb on - strandat 9.042 kb on - strandat 9.104 kb on + strand, within nifBat 9.124 kb on - strand, within nifBat 9.142 kb on - strand, within nifBat 9.178 kb on - strand, within nifBat 9.261 kb on - strand, within nifBat 9.313 kb on + strand, within nifBat 9.330 kb on + strand, within nifBat 9.338 kb on - strand, within nifBat 9.340 kb on - strand, within nifBat 9.340 kb on - strand, within nifBat 9.363 kb on - strand, within nifBat 9.448 kb on + strand, within nifB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM
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6,496 + +0.0
6,504 - -2.0
6,504 - +0.1
6,504 - -0.2
6,504 - +0.8
6,504 - +0.3
6,504 - +0.2
6,639 + DVUA0005 0.15 -0.1
6,639 - DVUA0005 0.15 +0.1
6,647 - DVUA0005 0.16 -0.1
6,663 + DVUA0005 0.18 +0.4
6,686 + DVUA0005 0.20 +0.0
6,716 - DVUA0005 0.23 -0.1
6,740 + DVUA0005 0.26 +0.4
6,832 + DVUA0005 0.36 +0.3
6,865 - DVUA0005 0.39 -0.1
6,995 + DVUA0005 0.53 -0.1
7,016 + DVUA0005 0.55 +0.0
7,016 + DVUA0005 0.55 +0.0
7,125 + DVUA0005 0.67 -0.0
7,140 - DVUA0005 0.69 +0.3
7,171 + DVUA0005 0.72 +0.1
7,314 - DVUA0005 0.87 -0.2
7,358 + -0.4
7,362 + +0.1
7,365 - -0.2
7,518 + -0.1
7,526 - +0.3
7,729 - mgtE DVUA0006 0.27 +0.8
7,736 + mgtE DVUA0006 0.28 +0.6
7,855 - mgtE DVUA0006 0.40 -0.2
8,000 - mgtE DVUA0006 0.55 -0.1
8,071 + mgtE DVUA0006 0.62 +1.8
8,072 - mgtE DVUA0006 0.62 -0.4
8,152 + mgtE DVUA0006 0.70 +0.8
8,160 - mgtE DVUA0006 0.71 +0.6
8,251 - mgtE DVUA0006 0.80 +1.1
8,404 - +2.4
8,643 - +1.4
8,695 + -0.4
8,741 + -0.4
8,762 + +0.8
8,785 + -0.2
8,841 + -0.1
8,849 - -1.3
8,931 - -0.4
8,931 - +0.3
8,933 - +0.2
9,042 - +0.1
9,042 - +0.8
9,104 + nifB DVUA0007 0.13 +1.1
9,124 - nifB DVUA0007 0.14 +0.5
9,142 - nifB DVUA0007 0.16 -0.2
9,178 - nifB DVUA0007 0.18 -0.1
9,261 - nifB DVUA0007 0.23 +1.9
9,313 + nifB DVUA0007 0.27 -0.2
9,330 + nifB DVUA0007 0.28 +0.5
9,338 - nifB DVUA0007 0.28 +1.1
9,340 - nifB DVUA0007 0.28 -0.0
9,340 - nifB DVUA0007 0.28 -0.1
9,363 - nifB DVUA0007 0.30 +0.9
9,448 + nifB DVUA0007 0.35 -0.6

Or see this region's nucleotide sequence