Experiment: MoYLS4 with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0200 and DVU0201 are separated by 8 nucleotides DVU0201 and DVU0202 are separated by 2 nucleotides DVU0202 and DVU0203 are separated by 20 nucleotides
DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002
DVU0200
DVU0201: DVU0201 - hypothetical protein (TIGR), at 247,011 to 247,331
DVU0201
DVU0202: DVU0202 - holin (TIGR), at 247,334 to 247,822
DVU0202
DVU0203: DVU0203 - conserved hypothetical protein (TIGR), at 247,843 to 248,391
DVU0203
Position (kb) 247
248 Strain fitness (log2 ratio) -1
0
1 at 246.527 kb on - strand, within DVU0200 at 247.045 kb on - strand, within DVU0201 at 247.045 kb on - strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.059 kb on + strand, within DVU0201 at 247.084 kb on - strand, within DVU0201 at 247.249 kb on - strand, within DVU0201 at 247.362 kb on - strand at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.925 kb on + strand, within DVU0203 at 247.925 kb on + strand, within DVU0203 at 247.925 kb on + strand, within DVU0203 at 247.967 kb on - strand, within DVU0203 at 247.967 kb on - strand, within DVU0203
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM remove 246,527 - DVU0200 0.53 -0.2 247,045 - DVU0201 0.11 -0.9 247,045 - DVU0201 0.11 -0.8 247,057 + DVU0201 0.14 -0.3 247,057 + DVU0201 0.14 +0.2 247,057 + DVU0201 0.14 -0.7 247,059 + DVU0201 0.15 -0.3 247,084 - DVU0201 0.23 +0.4 247,249 - DVU0201 0.74 -0.9 247,362 - +0.3 247,499 + DVU0202 0.34 -0.2 247,499 + DVU0202 0.34 +0.1 247,499 + DVU0202 0.34 -0.1 247,499 + DVU0202 0.34 -0.3 247,925 + DVU0203 0.15 -0.3 247,925 + DVU0203 0.15 -0.5 247,925 + DVU0203 0.15 -0.3 247,967 - DVU0203 0.23 -0.0 247,967 - DVU0203 0.23 -0.2
Or see this region's nucleotide sequence