Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1555

Experiment: MoYLS4 with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1554 and DVU1555 overlap by 1 nucleotidesDVU1555 and DVU1556 are separated by 4 nucleotidesDVU1556 and DVU1557 are separated by 8 nucleotides DVU1554: DVU1554 - radical SAM domain protein (TIGR), at 1,631,085 to 1,632,716 DVU1554 DVU1555: DVU1555 - hypothetical protein (TIGR), at 1,632,716 to 1,633,168 DVU1555 DVU1556: DVU1556 - conserved domain protein (TIGR), at 1,633,173 to 1,634,066 DVU1556 DVU1557: DVU1557 - hypothetical protein (TIGR), at 1,634,075 to 1,634,290 DVU1557 Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -1 0 1at 1631.799 kb on - strand, within DVU1554at 1631.801 kb on + strand, within DVU1554at 1631.801 kb on + strand, within DVU1554at 1631.809 kb on - strand, within DVU1554at 1631.819 kb on - strand, within DVU1554at 1631.823 kb on - strand, within DVU1554at 1631.834 kb on + strand, within DVU1554at 1631.874 kb on + strand, within DVU1554at 1631.891 kb on - strand, within DVU1554at 1631.938 kb on - strand, within DVU1554at 1631.975 kb on + strand, within DVU1554at 1632.047 kb on - strand, within DVU1554at 1632.060 kb on - strand, within DVU1554at 1632.157 kb on + strand, within DVU1554at 1632.220 kb on - strand, within DVU1554at 1632.228 kb on + strand, within DVU1554at 1632.230 kb on + strand, within DVU1554at 1632.265 kb on + strand, within DVU1554at 1632.268 kb on - strand, within DVU1554at 1632.268 kb on - strand, within DVU1554at 1632.268 kb on - strand, within DVU1554at 1632.288 kb on - strand, within DVU1554at 1632.299 kb on - strand, within DVU1554at 1632.301 kb on + strand, within DVU1554at 1632.309 kb on - strand, within DVU1554at 1632.392 kb on - strand, within DVU1554at 1632.487 kb on + strand, within DVU1554at 1632.507 kb on + strand, within DVU1554at 1632.532 kb on + strand, within DVU1554at 1632.584 kb on - strandat 1632.659 kb on + strandat 1632.814 kb on + strand, within DVU1555at 1632.822 kb on - strand, within DVU1555at 1632.855 kb on - strand, within DVU1555at 1632.928 kb on + strand, within DVU1555at 1632.950 kb on + strand, within DVU1555at 1632.950 kb on + strand, within DVU1555at 1632.950 kb on + strand, within DVU1555at 1632.950 kb on + strand, within DVU1555at 1632.950 kb on + strand, within DVU1555at 1632.958 kb on - strand, within DVU1555at 1632.958 kb on - strand, within DVU1555at 1632.962 kb on + strand, within DVU1555at 1632.974 kb on + strand, within DVU1555at 1633.006 kb on + strand, within DVU1555at 1633.006 kb on + strand, within DVU1555at 1633.006 kb on + strand, within DVU1555at 1633.014 kb on - strand, within DVU1555at 1633.014 kb on - strand, within DVU1555at 1633.014 kb on - strand, within DVU1555at 1633.014 kb on - strand, within DVU1555at 1633.018 kb on + strand, within DVU1555at 1633.039 kb on - strand, within DVU1555at 1633.039 kb on - strand, within DVU1555at 1633.041 kb on + strand, within DVU1555at 1633.052 kb on + strand, within DVU1555at 1633.052 kb on + strand, within DVU1555at 1633.178 kb on + strandat 1633.295 kb on + strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.400 kb on - strand, within DVU1556at 1633.587 kb on + strand, within DVU1556at 1633.798 kb on + strand, within DVU1556at 1633.887 kb on - strand, within DVU1556at 1633.943 kb on - strand, within DVU1556at 1633.985 kb on - strandat 1634.104 kb on + strand, within DVU1557

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM
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1,631,799 - DVU1554 0.44 -0.3
1,631,801 + DVU1554 0.44 +0.5
1,631,801 + DVU1554 0.44 -0.7
1,631,809 - DVU1554 0.44 +0.6
1,631,819 - DVU1554 0.45 -0.1
1,631,823 - DVU1554 0.45 -0.4
1,631,834 + DVU1554 0.46 -0.2
1,631,874 + DVU1554 0.48 +0.8
1,631,891 - DVU1554 0.49 +0.7
1,631,938 - DVU1554 0.52 -0.4
1,631,975 + DVU1554 0.55 -0.6
1,632,047 - DVU1554 0.59 -0.1
1,632,060 - DVU1554 0.60 -0.2
1,632,157 + DVU1554 0.66 -0.5
1,632,220 - DVU1554 0.70 +0.2
1,632,228 + DVU1554 0.70 -0.4
1,632,230 + DVU1554 0.70 -0.3
1,632,265 + DVU1554 0.72 -1.3
1,632,268 - DVU1554 0.72 -0.1
1,632,268 - DVU1554 0.72 -0.0
1,632,268 - DVU1554 0.72 -0.1
1,632,288 - DVU1554 0.74 -0.9
1,632,299 - DVU1554 0.74 +0.3
1,632,301 + DVU1554 0.75 -0.2
1,632,309 - DVU1554 0.75 +0.6
1,632,392 - DVU1554 0.80 -0.3
1,632,487 + DVU1554 0.86 +0.0
1,632,507 + DVU1554 0.87 +0.3
1,632,532 + DVU1554 0.89 -0.4
1,632,584 - -0.2
1,632,659 + -1.0
1,632,814 + DVU1555 0.22 -1.0
1,632,822 - DVU1555 0.23 -0.1
1,632,855 - DVU1555 0.31 +0.6
1,632,928 + DVU1555 0.47 +0.1
1,632,950 + DVU1555 0.52 -0.2
1,632,950 + DVU1555 0.52 +0.3
1,632,950 + DVU1555 0.52 -0.4
1,632,950 + DVU1555 0.52 -0.6
1,632,950 + DVU1555 0.52 -0.2
1,632,958 - DVU1555 0.53 +0.4
1,632,958 - DVU1555 0.53 +1.6
1,632,962 + DVU1555 0.54 +0.0
1,632,974 + DVU1555 0.57 +0.0
1,633,006 + DVU1555 0.64 +0.0
1,633,006 + DVU1555 0.64 +0.0
1,633,006 + DVU1555 0.64 +0.6
1,633,014 - DVU1555 0.66 +0.2
1,633,014 - DVU1555 0.66 +0.8
1,633,014 - DVU1555 0.66 +1.5
1,633,014 - DVU1555 0.66 -0.3
1,633,018 + DVU1555 0.67 -0.2
1,633,039 - DVU1555 0.71 -0.2
1,633,039 - DVU1555 0.71 +0.3
1,633,041 + DVU1555 0.72 +0.8
1,633,052 + DVU1555 0.74 -0.4
1,633,052 + DVU1555 0.74 +0.0
1,633,178 + -0.7
1,633,295 + DVU1556 0.14 -1.3
1,633,330 - DVU1556 0.18 +0.6
1,633,330 - DVU1556 0.18 +0.4
1,633,330 - DVU1556 0.18 -0.2
1,633,400 - DVU1556 0.25 +0.0
1,633,587 + DVU1556 0.46 +0.8
1,633,798 + DVU1556 0.70 +0.1
1,633,887 - DVU1556 0.80 +0.4
1,633,943 - DVU1556 0.86 -0.7
1,633,985 - -0.2
1,634,104 + DVU1557 0.13 -0.1

Or see this region's nucleotide sequence