Experiment: MoYLS4 with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1554 and DVU1555 overlap by 1 nucleotides DVU1555 and DVU1556 are separated by 4 nucleotides DVU1556 and DVU1557 are separated by 8 nucleotides
DVU1554: DVU1554 - radical SAM domain protein (TIGR), at 1,631,085 to 1,632,716
DVU1554
DVU1555: DVU1555 - hypothetical protein (TIGR), at 1,632,716 to 1,633,168
DVU1555
DVU1556: DVU1556 - conserved domain protein (TIGR), at 1,633,173 to 1,634,066
DVU1556
DVU1557: DVU1557 - hypothetical protein (TIGR), at 1,634,075 to 1,634,290
DVU1557
Position (kb)
1632
1633
1634 Strain fitness (log2 ratio)
-1
0
1 at 1631.799 kb on - strand, within DVU1554 at 1631.801 kb on + strand, within DVU1554 at 1631.801 kb on + strand, within DVU1554 at 1631.809 kb on - strand, within DVU1554 at 1631.819 kb on - strand, within DVU1554 at 1631.823 kb on - strand, within DVU1554 at 1631.834 kb on + strand, within DVU1554 at 1631.874 kb on + strand, within DVU1554 at 1631.891 kb on - strand, within DVU1554 at 1631.938 kb on - strand, within DVU1554 at 1631.975 kb on + strand, within DVU1554 at 1632.047 kb on - strand, within DVU1554 at 1632.060 kb on - strand, within DVU1554 at 1632.157 kb on + strand, within DVU1554 at 1632.220 kb on - strand, within DVU1554 at 1632.228 kb on + strand, within DVU1554 at 1632.230 kb on + strand, within DVU1554 at 1632.265 kb on + strand, within DVU1554 at 1632.268 kb on - strand, within DVU1554 at 1632.268 kb on - strand, within DVU1554 at 1632.268 kb on - strand, within DVU1554 at 1632.288 kb on - strand, within DVU1554 at 1632.299 kb on - strand, within DVU1554 at 1632.301 kb on + strand, within DVU1554 at 1632.309 kb on - strand, within DVU1554 at 1632.392 kb on - strand, within DVU1554 at 1632.487 kb on + strand, within DVU1554 at 1632.507 kb on + strand, within DVU1554 at 1632.532 kb on + strand, within DVU1554 at 1632.584 kb on - strand at 1632.659 kb on + strand at 1632.814 kb on + strand, within DVU1555 at 1632.822 kb on - strand, within DVU1555 at 1632.855 kb on - strand, within DVU1555 at 1632.928 kb on + strand, within DVU1555 at 1632.950 kb on + strand, within DVU1555 at 1632.950 kb on + strand, within DVU1555 at 1632.950 kb on + strand, within DVU1555 at 1632.950 kb on + strand, within DVU1555 at 1632.950 kb on + strand, within DVU1555 at 1632.958 kb on - strand, within DVU1555 at 1632.958 kb on - strand, within DVU1555 at 1632.962 kb on + strand, within DVU1555 at 1632.974 kb on + strand, within DVU1555 at 1633.006 kb on + strand, within DVU1555 at 1633.006 kb on + strand, within DVU1555 at 1633.006 kb on + strand, within DVU1555 at 1633.014 kb on - strand, within DVU1555 at 1633.014 kb on - strand, within DVU1555 at 1633.014 kb on - strand, within DVU1555 at 1633.014 kb on - strand, within DVU1555 at 1633.018 kb on + strand, within DVU1555 at 1633.039 kb on - strand, within DVU1555 at 1633.039 kb on - strand, within DVU1555 at 1633.041 kb on + strand, within DVU1555 at 1633.052 kb on + strand, within DVU1555 at 1633.052 kb on + strand, within DVU1555 at 1633.178 kb on + strand at 1633.295 kb on + strand, within DVU1556 at 1633.330 kb on - strand, within DVU1556 at 1633.330 kb on - strand, within DVU1556 at 1633.330 kb on - strand, within DVU1556 at 1633.400 kb on - strand, within DVU1556 at 1633.587 kb on + strand, within DVU1556 at 1633.798 kb on + strand, within DVU1556 at 1633.887 kb on - strand, within DVU1556 at 1633.943 kb on - strand, within DVU1556 at 1633.985 kb on - strand at 1634.104 kb on + strand, within DVU1557
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM remove 1,631,799 - DVU1554 0.44 -0.3 1,631,801 + DVU1554 0.44 +0.5 1,631,801 + DVU1554 0.44 -0.7 1,631,809 - DVU1554 0.44 +0.6 1,631,819 - DVU1554 0.45 -0.1 1,631,823 - DVU1554 0.45 -0.4 1,631,834 + DVU1554 0.46 -0.2 1,631,874 + DVU1554 0.48 +0.8 1,631,891 - DVU1554 0.49 +0.7 1,631,938 - DVU1554 0.52 -0.4 1,631,975 + DVU1554 0.55 -0.6 1,632,047 - DVU1554 0.59 -0.1 1,632,060 - DVU1554 0.60 -0.2 1,632,157 + DVU1554 0.66 -0.5 1,632,220 - DVU1554 0.70 +0.2 1,632,228 + DVU1554 0.70 -0.4 1,632,230 + DVU1554 0.70 -0.3 1,632,265 + DVU1554 0.72 -1.3 1,632,268 - DVU1554 0.72 -0.1 1,632,268 - DVU1554 0.72 -0.0 1,632,268 - DVU1554 0.72 -0.1 1,632,288 - DVU1554 0.74 -0.9 1,632,299 - DVU1554 0.74 +0.3 1,632,301 + DVU1554 0.75 -0.2 1,632,309 - DVU1554 0.75 +0.6 1,632,392 - DVU1554 0.80 -0.3 1,632,487 + DVU1554 0.86 +0.0 1,632,507 + DVU1554 0.87 +0.3 1,632,532 + DVU1554 0.89 -0.4 1,632,584 - -0.2 1,632,659 + -1.0 1,632,814 + DVU1555 0.22 -1.0 1,632,822 - DVU1555 0.23 -0.1 1,632,855 - DVU1555 0.31 +0.6 1,632,928 + DVU1555 0.47 +0.1 1,632,950 + DVU1555 0.52 -0.2 1,632,950 + DVU1555 0.52 +0.3 1,632,950 + DVU1555 0.52 -0.4 1,632,950 + DVU1555 0.52 -0.6 1,632,950 + DVU1555 0.52 -0.2 1,632,958 - DVU1555 0.53 +0.4 1,632,958 - DVU1555 0.53 +1.6 1,632,962 + DVU1555 0.54 +0.0 1,632,974 + DVU1555 0.57 +0.0 1,633,006 + DVU1555 0.64 +0.0 1,633,006 + DVU1555 0.64 +0.0 1,633,006 + DVU1555 0.64 +0.6 1,633,014 - DVU1555 0.66 +0.2 1,633,014 - DVU1555 0.66 +0.8 1,633,014 - DVU1555 0.66 +1.5 1,633,014 - DVU1555 0.66 -0.3 1,633,018 + DVU1555 0.67 -0.2 1,633,039 - DVU1555 0.71 -0.2 1,633,039 - DVU1555 0.71 +0.3 1,633,041 + DVU1555 0.72 +0.8 1,633,052 + DVU1555 0.74 -0.4 1,633,052 + DVU1555 0.74 +0.0 1,633,178 + -0.7 1,633,295 + DVU1556 0.14 -1.3 1,633,330 - DVU1556 0.18 +0.6 1,633,330 - DVU1556 0.18 +0.4 1,633,330 - DVU1556 0.18 -0.2 1,633,400 - DVU1556 0.25 +0.0 1,633,587 + DVU1556 0.46 +0.8 1,633,798 + DVU1556 0.70 +0.1 1,633,887 - DVU1556 0.80 +0.4 1,633,943 - DVU1556 0.86 -0.7 1,633,985 - -0.2 1,634,104 + DVU1557 0.13 -0.1
Or see this region's nucleotide sequence