Experiment: MoYLS4 with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0978 and b1200 are separated by 184 nucleotides b1200 and b1199 are separated by 178 nucleotides b1199 and ptsI are separated by 3 nucleotides
DVU0978: DVU0978 - ABC transporter, periplasmic substrate-binding protein, putative (TIGR), at 1,073,542 to 1,074,396
DVU0978
DVU0979: b1200 - DAK1 domain protein (TIGR), at 1,074,581 to 1,075,645
b1200
DVU0980: b1199 - DAK2 domain protein (TIGR), at 1,075,824 to 1,076,456
b1199
DVU0981: ptsI - multiphosphoryl transfer protein, putative (TIGR), at 1,076,460 to 1,079,024
ptsI
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1073.621 kb on - strand at 1073.669 kb on + strand, within DVU0978 at 1073.686 kb on - strand, within DVU0978 at 1073.689 kb on + strand, within DVU0978 at 1073.726 kb on + strand, within DVU0978 at 1073.726 kb on + strand, within DVU0978 at 1073.731 kb on + strand, within DVU0978 at 1073.734 kb on - strand, within DVU0978 at 1073.747 kb on + strand, within DVU0978 at 1073.844 kb on + strand, within DVU0978 at 1074.005 kb on - strand, within DVU0978 at 1074.046 kb on + strand, within DVU0978 at 1074.052 kb on - strand, within DVU0978 at 1074.063 kb on + strand, within DVU0978 at 1074.082 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.192 kb on + strand, within DVU0978 at 1074.240 kb on - strand, within DVU0978 at 1074.355 kb on - strand at 1074.355 kb on - strand at 1074.461 kb on + strand at 1074.528 kb on + strand at 1074.533 kb on - strand at 1074.533 kb on - strand at 1074.533 kb on - strand at 1074.548 kb on + strand at 1074.590 kb on - strand at 1074.669 kb on - strand at 1074.736 kb on - strand, within b1200 at 1074.798 kb on + strand, within b1200 at 1074.822 kb on + strand, within b1200 at 1074.885 kb on - strand, within b1200 at 1074.937 kb on - strand, within b1200 at 1074.942 kb on - strand, within b1200 at 1074.956 kb on - strand, within b1200 at 1075.011 kb on - strand, within b1200 at 1075.011 kb on - strand, within b1200 at 1075.090 kb on - strand, within b1200 at 1075.090 kb on - strand, within b1200 at 1075.095 kb on + strand, within b1200 at 1075.113 kb on + strand, within b1200 at 1075.245 kb on - strand, within b1200 at 1075.285 kb on + strand, within b1200 at 1075.321 kb on + strand, within b1200 at 1075.329 kb on - strand, within b1200 at 1075.370 kb on - strand, within b1200 at 1075.467 kb on + strand, within b1200 at 1075.648 kb on - strand at 1075.654 kb on - strand at 1075.684 kb on - strand at 1075.721 kb on - strand at 1075.794 kb on + strand at 1075.853 kb on - strand at 1076.034 kb on + strand, within b1199 at 1076.034 kb on + strand, within b1199 at 1076.042 kb on - strand, within b1199 at 1076.044 kb on + strand, within b1199 at 1076.047 kb on - strand, within b1199 at 1076.075 kb on - strand, within b1199 at 1076.078 kb on - strand, within b1199 at 1076.078 kb on - strand, within b1199 at 1076.170 kb on + strand, within b1199 at 1076.182 kb on - strand, within b1199 at 1076.201 kb on + strand, within b1199 at 1076.201 kb on + strand, within b1199 at 1076.209 kb on - strand, within b1199 at 1076.209 kb on - strand, within b1199 at 1076.210 kb on + strand, within b1199 at 1076.305 kb on + strand, within b1199 at 1076.375 kb on + strand, within b1199 at 1076.453 kb on - strand at 1076.493 kb on + strand at 1076.501 kb on - strand at 1076.512 kb on - strand at 1076.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM remove 1,073,621 - -1.2 1,073,669 + DVU0978 0.15 -1.2 1,073,686 - DVU0978 0.17 -0.9 1,073,689 + DVU0978 0.17 -0.7 1,073,726 + DVU0978 0.22 +0.2 1,073,726 + DVU0978 0.22 +0.7 1,073,731 + DVU0978 0.22 -0.5 1,073,734 - DVU0978 0.22 -1.4 1,073,747 + DVU0978 0.24 +2.6 1,073,844 + DVU0978 0.35 -0.9 1,074,005 - DVU0978 0.54 -2.1 1,074,046 + DVU0978 0.59 +0.4 1,074,052 - DVU0978 0.60 -0.5 1,074,063 + DVU0978 0.61 +0.1 1,074,082 + DVU0978 0.63 -0.1 1,074,192 + DVU0978 0.76 -0.8 1,074,192 + DVU0978 0.76 -2.8 1,074,192 + DVU0978 0.76 +0.2 1,074,240 - DVU0978 0.82 -0.0 1,074,355 - -0.2 1,074,355 - +0.7 1,074,461 + -1.3 1,074,528 + +0.1 1,074,533 - -0.2 1,074,533 - -0.0 1,074,533 - -0.1 1,074,548 + -0.8 1,074,590 - -0.0 1,074,669 - -0.1 1,074,736 - b1200 DVU0979 0.15 -0.1 1,074,798 + b1200 DVU0979 0.20 +0.4 1,074,822 + b1200 DVU0979 0.23 +0.4 1,074,885 - b1200 DVU0979 0.29 +0.5 1,074,937 - b1200 DVU0979 0.33 +0.3 1,074,942 - b1200 DVU0979 0.34 +0.6 1,074,956 - b1200 DVU0979 0.35 -0.8 1,075,011 - b1200 DVU0979 0.40 +0.3 1,075,011 - b1200 DVU0979 0.40 -0.2 1,075,090 - b1200 DVU0979 0.48 +0.1 1,075,090 - b1200 DVU0979 0.48 -0.3 1,075,095 + b1200 DVU0979 0.48 -0.0 1,075,113 + b1200 DVU0979 0.50 -0.1 1,075,245 - b1200 DVU0979 0.62 -0.2 1,075,285 + b1200 DVU0979 0.66 -0.4 1,075,321 + b1200 DVU0979 0.69 +0.2 1,075,329 - b1200 DVU0979 0.70 +1.1 1,075,370 - b1200 DVU0979 0.74 -0.0 1,075,467 + b1200 DVU0979 0.83 +0.7 1,075,648 - -0.0 1,075,654 - +0.3 1,075,684 - +0.2 1,075,721 - -0.4 1,075,794 + -0.1 1,075,853 - -0.5 1,076,034 + b1199 DVU0980 0.33 -0.6 1,076,034 + b1199 DVU0980 0.33 -0.4 1,076,042 - b1199 DVU0980 0.34 -0.2 1,076,044 + b1199 DVU0980 0.35 +0.1 1,076,047 - b1199 DVU0980 0.35 -0.5 1,076,075 - b1199 DVU0980 0.40 -0.7 1,076,078 - b1199 DVU0980 0.40 -0.2 1,076,078 - b1199 DVU0980 0.40 +0.1 1,076,170 + b1199 DVU0980 0.55 +0.7 1,076,182 - b1199 DVU0980 0.57 -0.0 1,076,201 + b1199 DVU0980 0.60 +0.3 1,076,201 + b1199 DVU0980 0.60 -0.5 1,076,209 - b1199 DVU0980 0.61 +0.1 1,076,209 - b1199 DVU0980 0.61 -0.1 1,076,210 + b1199 DVU0980 0.61 -0.7 1,076,305 + b1199 DVU0980 0.76 -1.0 1,076,375 + b1199 DVU0980 0.87 +0.2 1,076,453 - -2.4 1,076,493 + +0.2 1,076,501 - -1.4 1,076,512 - -0.3 1,076,540 - -0.2
Or see this region's nucleotide sequence