Strain Fitness in Sinorhizobium meliloti 1021 around SMc04316

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04300 and SMc04316 overlap by 13 nucleotidesSMc04316 and SMc04317 are separated by 7 nucleotides SMc04300: SMc04300 - iron ABC transporter ATP-binding protein, at 2,217,485 to 2,218,525 SMc04300 SMc04316: SMc04316 - iron ABC transporter permease, at 2,218,513 to 2,220,549 SMc04316 SMc04317: SMc04317 - iron-binding periplasmic protein, at 2,220,557 to 2,221,537 SMc04317 Position (kb) 2218 2219 2220 2221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2217.530 kb on - strandat 2217.531 kb on + strandat 2217.532 kb on - strandat 2217.532 kb on - strandat 2217.532 kb on - strandat 2217.832 kb on - strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.930 kb on + strand, within SMc04300at 2217.931 kb on - strand, within SMc04300at 2217.931 kb on - strand, within SMc04300at 2218.098 kb on - strand, within SMc04300at 2218.098 kb on - strand, within SMc04300at 2218.245 kb on + strand, within SMc04300at 2218.904 kb on + strand, within SMc04316at 2218.904 kb on + strand, within SMc04316at 2218.904 kb on + strand, within SMc04316at 2218.934 kb on + strand, within SMc04316at 2219.078 kb on + strand, within SMc04316at 2219.089 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.179 kb on + strand, within SMc04316at 2219.180 kb on - strand, within SMc04316at 2219.180 kb on - strand, within SMc04316at 2219.189 kb on + strand, within SMc04316at 2219.232 kb on - strand, within SMc04316at 2219.749 kb on + strand, within SMc04316at 2219.783 kb on + strandat 2219.783 kb on + strand, within SMc04316at 2219.947 kb on - strand, within SMc04316at 2220.012 kb on + strand, within SMc04316at 2220.021 kb on + strand, within SMc04316at 2220.021 kb on + strand, within SMc04316at 2220.258 kb on + strand, within SMc04316at 2220.258 kb on + strand, within SMc04316at 2220.258 kb on + strand, within SMc04316at 2220.259 kb on - strand, within SMc04316at 2220.281 kb on + strand, within SMc04316at 2220.282 kb on - strand, within SMc04316at 2220.282 kb on - strand, within SMc04316at 2220.700 kb on + strand, within SMc04317at 2220.903 kb on + strand, within SMc04317at 2220.904 kb on - strand, within SMc04317at 2220.904 kb on - strand, within SMc04317at 2220.904 kb on - strand, within SMc04317at 2220.936 kb on - strand, within SMc04317at 2220.936 kb on - strand, within SMc04317at 2220.987 kb on + strand, within SMc04317at 2220.987 kb on + strand, within SMc04317at 2220.987 kb on + strand, within SMc04317at 2220.987 kb on + strand, within SMc04317at 2220.988 kb on - strand, within SMc04317at 2220.990 kb on + strand, within SMc04317at 2220.990 kb on + strand, within SMc04317at 2221.143 kb on + strand, within SMc04317at 2221.143 kb on + strand, within SMc04317at 2221.144 kb on - strand, within SMc04317at 2221.144 kb on - strand, within SMc04317at 2221.144 kb on - strand, within SMc04317at 2221.176 kb on + strand, within SMc04317at 2221.177 kb on - strand, within SMc04317at 2221.179 kb on + strand, within SMc04317at 2221.212 kb on + strandat 2221.236 kb on + strand, within SMc04317at 2221.283 kb on - strand, within SMc04317at 2221.452 kb on + strandat 2221.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,217,530 - +0.5
2,217,531 + +1.5
2,217,532 - +0.5
2,217,532 - -1.9
2,217,532 - +1.0
2,217,832 - SMc04300 0.33 -0.6
2,217,930 + SMc04300 0.43 +3.1
2,217,930 + SMc04300 0.43 -0.5
2,217,930 + SMc04300 0.43 -1.1
2,217,930 + SMc04300 0.43 -2.6
2,217,930 + SMc04300 0.43 +0.3
2,217,931 - SMc04300 0.43 -0.5
2,217,931 - SMc04300 0.43 -0.7
2,218,098 - SMc04300 0.59 +0.6
2,218,098 - SMc04300 0.59 -0.3
2,218,245 + SMc04300 0.73 -0.8
2,218,904 + SMc04316 0.19 +0.1
2,218,904 + SMc04316 0.19 -0.1
2,218,904 + SMc04316 0.19 -0.6
2,218,934 + SMc04316 0.21 -2.1
2,219,078 + SMc04316 0.28 -0.7
2,219,089 + SMc04316 0.28 +0.2
2,219,179 + SMc04316 0.33 +1.9
2,219,179 + SMc04316 0.33 -0.3
2,219,179 + SMc04316 0.33 -0.7
2,219,180 - SMc04316 0.33 -0.2
2,219,180 - SMc04316 0.33 -0.5
2,219,189 + SMc04316 0.33 +1.9
2,219,232 - SMc04316 0.35 -0.1
2,219,749 + SMc04316 0.61 -0.8
2,219,783 + +1.1
2,219,783 + SMc04316 0.62 +0.6
2,219,947 - SMc04316 0.70 -1.2
2,220,012 + SMc04316 0.74 -1.3
2,220,021 + SMc04316 0.74 +0.5
2,220,021 + SMc04316 0.74 +0.6
2,220,258 + SMc04316 0.86 -0.2
2,220,258 + SMc04316 0.86 -0.3
2,220,258 + SMc04316 0.86 +2.1
2,220,259 - SMc04316 0.86 +0.3
2,220,281 + SMc04316 0.87 +0.6
2,220,282 - SMc04316 0.87 -1.3
2,220,282 - SMc04316 0.87 -0.4
2,220,700 + SMc04317 0.15 -0.2
2,220,903 + SMc04317 0.35 -0.2
2,220,904 - SMc04317 0.35 +0.0
2,220,904 - SMc04317 0.35 +0.7
2,220,904 - SMc04317 0.35 +1.0
2,220,936 - SMc04317 0.39 -0.9
2,220,936 - SMc04317 0.39 -0.3
2,220,987 + SMc04317 0.44 -1.2
2,220,987 + SMc04317 0.44 -0.5
2,220,987 + SMc04317 0.44 +1.6
2,220,987 + SMc04317 0.44 -0.5
2,220,988 - SMc04317 0.44 -1.0
2,220,990 + SMc04317 0.44 -0.5
2,220,990 + SMc04317 0.44 +0.3
2,221,143 + SMc04317 0.60 -0.3
2,221,143 + SMc04317 0.60 -0.3
2,221,144 - SMc04317 0.60 -0.4
2,221,144 - SMc04317 0.60 -1.5
2,221,144 - SMc04317 0.60 -0.3
2,221,176 + SMc04317 0.63 -0.3
2,221,177 - SMc04317 0.63 +0.2
2,221,179 + SMc04317 0.63 +2.3
2,221,212 + +0.1
2,221,236 + SMc04317 0.69 +1.1
2,221,283 - SMc04317 0.74 -0.3
2,221,452 + +0.4
2,221,453 - +0.4

Or see this region's nucleotide sequence