Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04300 and SMc04316 overlap by 13 nucleotides SMc04316 and SMc04317 are separated by 7 nucleotides
SMc04300: SMc04300 - iron ABC transporter ATP-binding protein, at 2,217,485 to 2,218,525
SMc04300
SMc04316: SMc04316 - iron ABC transporter permease, at 2,218,513 to 2,220,549
SMc04316
SMc04317: SMc04317 - iron-binding periplasmic protein, at 2,220,557 to 2,221,537
SMc04317
Position (kb)
2218
2219
2220
2221 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2217.530 kb on - strand at 2217.531 kb on + strand at 2217.532 kb on - strand at 2217.532 kb on - strand at 2217.532 kb on - strand at 2217.832 kb on - strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.930 kb on + strand, within SMc04300 at 2217.931 kb on - strand, within SMc04300 at 2217.931 kb on - strand, within SMc04300 at 2218.098 kb on - strand, within SMc04300 at 2218.098 kb on - strand, within SMc04300 at 2218.245 kb on + strand, within SMc04300 at 2218.904 kb on + strand, within SMc04316 at 2218.904 kb on + strand, within SMc04316 at 2218.904 kb on + strand, within SMc04316 at 2218.934 kb on + strand, within SMc04316 at 2219.078 kb on + strand, within SMc04316 at 2219.089 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.179 kb on + strand, within SMc04316 at 2219.180 kb on - strand, within SMc04316 at 2219.180 kb on - strand, within SMc04316 at 2219.189 kb on + strand, within SMc04316 at 2219.232 kb on - strand, within SMc04316 at 2219.749 kb on + strand, within SMc04316 at 2219.783 kb on + strand at 2219.783 kb on + strand, within SMc04316 at 2219.947 kb on - strand, within SMc04316 at 2220.012 kb on + strand, within SMc04316 at 2220.021 kb on + strand, within SMc04316 at 2220.021 kb on + strand, within SMc04316 at 2220.258 kb on + strand, within SMc04316 at 2220.258 kb on + strand, within SMc04316 at 2220.258 kb on + strand, within SMc04316 at 2220.259 kb on - strand, within SMc04316 at 2220.281 kb on + strand, within SMc04316 at 2220.282 kb on - strand, within SMc04316 at 2220.282 kb on - strand, within SMc04316 at 2220.700 kb on + strand, within SMc04317 at 2220.903 kb on + strand, within SMc04317 at 2220.904 kb on - strand, within SMc04317 at 2220.904 kb on - strand, within SMc04317 at 2220.904 kb on - strand, within SMc04317 at 2220.936 kb on - strand, within SMc04317 at 2220.936 kb on - strand, within SMc04317 at 2220.987 kb on + strand, within SMc04317 at 2220.987 kb on + strand, within SMc04317 at 2220.987 kb on + strand, within SMc04317 at 2220.987 kb on + strand, within SMc04317 at 2220.988 kb on - strand, within SMc04317 at 2220.990 kb on + strand, within SMc04317 at 2220.990 kb on + strand, within SMc04317 at 2221.143 kb on + strand, within SMc04317 at 2221.143 kb on + strand, within SMc04317 at 2221.144 kb on - strand, within SMc04317 at 2221.144 kb on - strand, within SMc04317 at 2221.144 kb on - strand, within SMc04317 at 2221.176 kb on + strand, within SMc04317 at 2221.177 kb on - strand, within SMc04317 at 2221.179 kb on + strand, within SMc04317 at 2221.212 kb on + strand at 2221.236 kb on + strand, within SMc04317 at 2221.283 kb on - strand, within SMc04317 at 2221.452 kb on + strand at 2221.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,217,530 - +0.5 2,217,531 + +1.5 2,217,532 - +0.5 2,217,532 - -1.9 2,217,532 - +1.0 2,217,832 - SMc04300 0.33 -0.6 2,217,930 + SMc04300 0.43 +3.1 2,217,930 + SMc04300 0.43 -0.5 2,217,930 + SMc04300 0.43 -1.1 2,217,930 + SMc04300 0.43 -2.6 2,217,930 + SMc04300 0.43 +0.3 2,217,931 - SMc04300 0.43 -0.5 2,217,931 - SMc04300 0.43 -0.7 2,218,098 - SMc04300 0.59 +0.6 2,218,098 - SMc04300 0.59 -0.3 2,218,245 + SMc04300 0.73 -0.8 2,218,904 + SMc04316 0.19 +0.1 2,218,904 + SMc04316 0.19 -0.1 2,218,904 + SMc04316 0.19 -0.6 2,218,934 + SMc04316 0.21 -2.1 2,219,078 + SMc04316 0.28 -0.7 2,219,089 + SMc04316 0.28 +0.2 2,219,179 + SMc04316 0.33 +1.9 2,219,179 + SMc04316 0.33 -0.3 2,219,179 + SMc04316 0.33 -0.7 2,219,180 - SMc04316 0.33 -0.2 2,219,180 - SMc04316 0.33 -0.5 2,219,189 + SMc04316 0.33 +1.9 2,219,232 - SMc04316 0.35 -0.1 2,219,749 + SMc04316 0.61 -0.8 2,219,783 + +1.1 2,219,783 + SMc04316 0.62 +0.6 2,219,947 - SMc04316 0.70 -1.2 2,220,012 + SMc04316 0.74 -1.3 2,220,021 + SMc04316 0.74 +0.5 2,220,021 + SMc04316 0.74 +0.6 2,220,258 + SMc04316 0.86 -0.2 2,220,258 + SMc04316 0.86 -0.3 2,220,258 + SMc04316 0.86 +2.1 2,220,259 - SMc04316 0.86 +0.3 2,220,281 + SMc04316 0.87 +0.6 2,220,282 - SMc04316 0.87 -1.3 2,220,282 - SMc04316 0.87 -0.4 2,220,700 + SMc04317 0.15 -0.2 2,220,903 + SMc04317 0.35 -0.2 2,220,904 - SMc04317 0.35 +0.0 2,220,904 - SMc04317 0.35 +0.7 2,220,904 - SMc04317 0.35 +1.0 2,220,936 - SMc04317 0.39 -0.9 2,220,936 - SMc04317 0.39 -0.3 2,220,987 + SMc04317 0.44 -1.2 2,220,987 + SMc04317 0.44 -0.5 2,220,987 + SMc04317 0.44 +1.6 2,220,987 + SMc04317 0.44 -0.5 2,220,988 - SMc04317 0.44 -1.0 2,220,990 + SMc04317 0.44 -0.5 2,220,990 + SMc04317 0.44 +0.3 2,221,143 + SMc04317 0.60 -0.3 2,221,143 + SMc04317 0.60 -0.3 2,221,144 - SMc04317 0.60 -0.4 2,221,144 - SMc04317 0.60 -1.5 2,221,144 - SMc04317 0.60 -0.3 2,221,176 + SMc04317 0.63 -0.3 2,221,177 - SMc04317 0.63 +0.2 2,221,179 + SMc04317 0.63 +2.3 2,221,212 + +0.1 2,221,236 + SMc04317 0.69 +1.1 2,221,283 - SMc04317 0.74 -0.3 2,221,452 + +0.4 2,221,453 - +0.4
Or see this region's nucleotide sequence