Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03889 and SMc03890 are separated by 118 nucleotides SMc03890 and SMc03891 are separated by 270 nucleotides
SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579
SMc03889
SMc03890: SMc03890 - transcriptional regulator, at 3,557,698 to 3,558,480
SMc03890
SMc03891: SMc03891 - amino acid-binding periplasmic ABC transporter protein, at 3,558,751 to 3,559,524
SMc03891
Position (kb)
3557
3558
3559 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3557.179 kb on + strand, within SMc03889 at 3557.180 kb on - strand, within SMc03889 at 3557.580 kb on - strand at 3557.580 kb on - strand at 3557.580 kb on - strand at 3557.580 kb on - strand at 3557.581 kb on + strand at 3557.581 kb on + strand at 3557.706 kb on + strand at 3557.820 kb on + strand, within SMc03890 at 3557.903 kb on + strand, within SMc03890 at 3558.109 kb on - strand, within SMc03890 at 3558.205 kb on + strand, within SMc03890 at 3558.205 kb on + strand, within SMc03890 at 3558.526 kb on - strand at 3558.641 kb on - strand at 3558.669 kb on + strand at 3558.880 kb on + strand, within SMc03891 at 3558.880 kb on + strand, within SMc03891 at 3558.880 kb on + strand, within SMc03891 at 3558.881 kb on - strand, within SMc03891 at 3558.881 kb on - strand, within SMc03891 at 3558.896 kb on - strand, within SMc03891 at 3559.082 kb on - strand, within SMc03891 at 3559.099 kb on + strand, within SMc03891 at 3559.100 kb on - strand, within SMc03891 at 3559.100 kb on - strand, within SMc03891 at 3559.100 kb on - strand, within SMc03891 at 3559.102 kb on - strand, within SMc03891 at 3559.390 kb on + strand, within SMc03891 at 3559.477 kb on + strand at 3559.477 kb on + strand at 3559.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,557,179 + SMc03889 0.65 -0.3 3,557,180 - SMc03889 0.65 -2.6 3,557,580 - -0.3 3,557,580 - +0.6 3,557,580 - -1.2 3,557,580 - -0.3 3,557,581 + -1.0 3,557,581 + -0.7 3,557,706 + -0.5 3,557,820 + SMc03890 0.16 -0.8 3,557,903 + SMc03890 0.26 -1.1 3,558,109 - SMc03890 0.52 +0.6 3,558,205 + SMc03890 0.65 +0.4 3,558,205 + SMc03890 0.65 -0.8 3,558,526 - -0.2 3,558,641 - +2.3 3,558,669 + +0.2 3,558,880 + SMc03891 0.17 -0.4 3,558,880 + SMc03891 0.17 +1.4 3,558,880 + SMc03891 0.17 -0.7 3,558,881 - SMc03891 0.17 -0.8 3,558,881 - SMc03891 0.17 -1.1 3,558,896 - SMc03891 0.19 +0.2 3,559,082 - SMc03891 0.43 -0.2 3,559,099 + SMc03891 0.45 -0.6 3,559,100 - SMc03891 0.45 -0.3 3,559,100 - SMc03891 0.45 +0.8 3,559,100 - SMc03891 0.45 -0.6 3,559,102 - SMc03891 0.45 -1.1 3,559,390 + SMc03891 0.83 +4.1 3,559,477 + -0.4 3,559,477 + -0.3 3,559,478 - +4.0
Or see this region's nucleotide sequence