Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03887 and SMc03888 are separated by 9 nucleotides SMc03888 and SMc03889 are separated by 169 nucleotides
SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007
SMc03887
SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270
SMc03888
SMc03889: SMc03889 - transporter, at 3,556,440 to 3,557,579
SMc03889
Position (kb)
3555
3556
3557 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.128 kb on - strand at 3554.128 kb on - strand at 3554.128 kb on - strand at 3554.129 kb on + strand at 3554.129 kb on + strand at 3554.129 kb on + strand at 3554.130 kb on - strand at 3554.262 kb on + strand at 3554.325 kb on + strand at 3554.326 kb on - strand at 3554.384 kb on + strand at 3554.417 kb on + strand at 3554.417 kb on + strand at 3554.417 kb on + strand at 3554.418 kb on - strand at 3554.418 kb on - strand at 3554.419 kb on + strand at 3554.531 kb on + strand, within SMc03887 at 3554.531 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.645 kb on - strand, within SMc03887 at 3555.016 kb on - strand at 3555.018 kb on + strand at 3556.589 kb on - strand, within SMc03889 at 3556.640 kb on + strand, within SMc03889 at 3557.179 kb on + strand, within SMc03889 at 3557.180 kb on - strand, within SMc03889
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,554,127 + +0.4 3,554,127 + +0.0 3,554,127 + -0.3 3,554,127 + -1.4 3,554,127 + +0.9 3,554,127 + +0.3 3,554,127 + -0.1 3,554,127 + -0.8 3,554,127 + +0.6 3,554,128 - -0.6 3,554,128 - +0.2 3,554,128 - -0.6 3,554,129 + -0.1 3,554,129 + -0.3 3,554,129 + -0.2 3,554,130 - +0.4 3,554,262 + +0.4 3,554,325 + -0.2 3,554,326 - +2.9 3,554,384 + +0.3 3,554,417 + -2.6 3,554,417 + -0.6 3,554,417 + -1.1 3,554,418 - -0.3 3,554,418 - -0.6 3,554,419 + -0.1 3,554,531 + SMc03887 0.26 -2.6 3,554,531 + SMc03887 0.26 -1.9 3,554,624 + SMc03887 0.41 +0.8 3,554,624 + SMc03887 0.41 -0.3 3,554,624 + SMc03887 0.41 -0.1 3,554,642 + SMc03887 0.44 +0.4 3,554,642 + SMc03887 0.44 -0.5 3,554,642 + SMc03887 0.44 -0.6 3,554,642 + SMc03887 0.44 +0.4 3,554,645 - SMc03887 0.44 -0.9 3,555,016 - -0.5 3,555,018 + -0.3 3,556,589 - SMc03889 0.13 +0.2 3,556,640 + SMc03889 0.18 -0.2 3,557,179 + SMc03889 0.65 -0.3 3,557,180 - SMc03889 0.65 -2.6
Or see this region's nucleotide sequence