Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03173 and SMc03174 are separated by 169 nucleotides SMc03174 and SMc03175 are separated by 199 nucleotides
SMc03173: SMc03173 - lysyl-tRNA synthetase, at 3,134,551 to 3,136,047
SMc03173
SMc03174: SMc03174 - hypothetical protein, at 3,136,217 to 3,136,837
SMc03174
SMc03175: SMc03175 - nucleoside hydrolase, at 3,137,037 to 3,137,990
SMc03175
Position (kb)
3136
3137 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3136.390 kb on + strand, within SMc03174 at 3136.390 kb on + strand, within SMc03174 at 3136.392 kb on + strand, within SMc03174 at 3136.392 kb on + strand, within SMc03174 at 3136.392 kb on + strand, within SMc03174 at 3136.392 kb on + strand, within SMc03174 at 3136.393 kb on - strand, within SMc03174 at 3136.393 kb on - strand, within SMc03174 at 3136.393 kb on - strand, within SMc03174 at 3136.719 kb on - strand, within SMc03174 at 3136.738 kb on - strand, within SMc03174 at 3136.738 kb on - strand, within SMc03174 at 3136.738 kb on - strand, within SMc03174 at 3136.738 kb on - strand, within SMc03174 at 3136.898 kb on + strand at 3137.001 kb on + strand at 3137.036 kb on + strand at 3137.326 kb on + strand, within SMc03175 at 3137.327 kb on - strand, within SMc03175 at 3137.327 kb on - strand, within SMc03175 at 3137.327 kb on - strand, within SMc03175 at 3137.483 kb on - strand, within SMc03175 at 3137.713 kb on - strand, within SMc03175 at 3137.713 kb on - strand, within SMc03175 at 3137.778 kb on + strand, within SMc03175 at 3137.778 kb on + strand, within SMc03175 at 3137.778 kb on + strand, within SMc03175 at 3137.779 kb on - strand, within SMc03175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,136,390 + SMc03174 0.28 -1.3 3,136,390 + SMc03174 0.28 -2.8 3,136,392 + SMc03174 0.28 +0.2 3,136,392 + SMc03174 0.28 +0.2 3,136,392 + SMc03174 0.28 -0.9 3,136,392 + SMc03174 0.28 -1.1 3,136,393 - SMc03174 0.28 +1.9 3,136,393 - SMc03174 0.28 -0.7 3,136,393 - SMc03174 0.28 -0.8 3,136,719 - SMc03174 0.81 +0.5 3,136,738 - SMc03174 0.84 -1.5 3,136,738 - SMc03174 0.84 -1.0 3,136,738 - SMc03174 0.84 -2.0 3,136,738 - SMc03174 0.84 +0.1 3,136,898 + -1.7 3,137,001 + +0.1 3,137,036 + +1.3 3,137,326 + SMc03175 0.30 -0.1 3,137,327 - SMc03175 0.30 -0.1 3,137,327 - SMc03175 0.30 -5.5 3,137,327 - SMc03175 0.30 -0.2 3,137,483 - SMc03175 0.47 +0.2 3,137,713 - SMc03175 0.71 -1.5 3,137,713 - SMc03175 0.71 +0.4 3,137,778 + SMc03175 0.78 -0.6 3,137,778 + SMc03175 0.78 +1.7 3,137,778 + SMc03175 0.78 +1.2 3,137,779 - SMc03175 0.78 +1.5
Or see this region's nucleotide sequence