Strain Fitness in Sinorhizobium meliloti 1021 around SMc03174

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03173 and SMc03174 are separated by 169 nucleotidesSMc03174 and SMc03175 are separated by 199 nucleotides SMc03173: SMc03173 - lysyl-tRNA synthetase, at 3,134,551 to 3,136,047 SMc03173 SMc03174: SMc03174 - hypothetical protein, at 3,136,217 to 3,136,837 SMc03174 SMc03175: SMc03175 - nucleoside hydrolase, at 3,137,037 to 3,137,990 SMc03175 Position (kb) 3136 3137Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3136.390 kb on + strand, within SMc03174at 3136.390 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.392 kb on + strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.393 kb on - strand, within SMc03174at 3136.719 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.738 kb on - strand, within SMc03174at 3136.898 kb on + strandat 3137.001 kb on + strandat 3137.036 kb on + strandat 3137.326 kb on + strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.327 kb on - strand, within SMc03175at 3137.483 kb on - strand, within SMc03175at 3137.713 kb on - strand, within SMc03175at 3137.713 kb on - strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.778 kb on + strand, within SMc03175at 3137.779 kb on - strand, within SMc03175

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,136,390 + SMc03174 0.28 -1.3
3,136,390 + SMc03174 0.28 -2.8
3,136,392 + SMc03174 0.28 +0.2
3,136,392 + SMc03174 0.28 +0.2
3,136,392 + SMc03174 0.28 -0.9
3,136,392 + SMc03174 0.28 -1.1
3,136,393 - SMc03174 0.28 +1.9
3,136,393 - SMc03174 0.28 -0.7
3,136,393 - SMc03174 0.28 -0.8
3,136,719 - SMc03174 0.81 +0.5
3,136,738 - SMc03174 0.84 -1.5
3,136,738 - SMc03174 0.84 -1.0
3,136,738 - SMc03174 0.84 -2.0
3,136,738 - SMc03174 0.84 +0.1
3,136,898 + -1.7
3,137,001 + +0.1
3,137,036 + +1.3
3,137,326 + SMc03175 0.30 -0.1
3,137,327 - SMc03175 0.30 -0.1
3,137,327 - SMc03175 0.30 -5.5
3,137,327 - SMc03175 0.30 -0.2
3,137,483 - SMc03175 0.47 +0.2
3,137,713 - SMc03175 0.71 -1.5
3,137,713 - SMc03175 0.71 +0.4
3,137,778 + SMc03175 0.78 -0.6
3,137,778 + SMc03175 0.78 +1.7
3,137,778 + SMc03175 0.78 +1.2
3,137,779 - SMc03175 0.78 +1.5

Or see this region's nucleotide sequence