Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02768 and SMc02767 are separated by 237 nucleotides SMc02767 and SMc02766 are separated by 24 nucleotides
SMc02768: SMc02768 - hypothetical protein, at 26,383 to 27,138
SMc02768
SMc02767: SMc02767 - N-(5'-phosphoribosyl)anthranilate isomerase, at 27,376 to 28,023
SMc02767
SMc02766: SMc02766 - tryptophan synthase subunit beta, at 28,048 to 29,268
SMc02766
Position (kb) 27
28
29 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 26.852 kb on - strand, within SMc02768 at 27.455 kb on + strand, within SMc02767 at 27.456 kb on - strand, within SMc02767 at 27.670 kb on + strand, within SMc02767 at 27.671 kb on - strand, within SMc02767 at 27.736 kb on + strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.737 kb on - strand, within SMc02767 at 27.859 kb on + strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.860 kb on - strand, within SMc02767 at 27.933 kb on + strand, within SMc02767 at 27.933 kb on + strand, within SMc02767 at 27.934 kb on - strand, within SMc02767 at 28.062 kb on + strand at 28.112 kb on + strand at 28.113 kb on - strand at 28.113 kb on - strand at 28.234 kb on + strand, within SMc02766 at 28.234 kb on + strand, within SMc02766 at 28.234 kb on + strand, within SMc02766 at 28.235 kb on - strand, within SMc02766 at 28.236 kb on + strand, within SMc02766 at 28.258 kb on + strand, within SMc02766 at 28.303 kb on + strand, within SMc02766 at 28.304 kb on - strand, within SMc02766 at 28.480 kb on + strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.532 kb on - strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.637 kb on - strand, within SMc02766 at 28.640 kb on - strand, within SMc02766 at 28.646 kb on + strand, within SMc02766 at 28.646 kb on + strand, within SMc02766 at 28.647 kb on - strand, within SMc02766 at 28.647 kb on - strand, within SMc02766 at 28.936 kb on + strand, within SMc02766 at 28.936 kb on + strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 26,852 - SMc02768 0.62 -1.6 27,455 + SMc02767 0.12 -2.3 27,456 - SMc02767 0.12 -1.5 27,670 + SMc02767 0.45 -1.6 27,671 - SMc02767 0.46 -4.2 27,736 + SMc02767 0.56 -0.2 27,737 - SMc02767 0.56 -4.7 27,737 - SMc02767 0.56 -2.2 27,737 - SMc02767 0.56 -3.5 27,859 + SMc02767 0.75 -2.3 27,860 - SMc02767 0.75 -5.7 27,860 - SMc02767 0.75 -5.5 27,860 - SMc02767 0.75 -4.3 27,860 - SMc02767 0.75 -3.3 27,933 + SMc02767 0.86 -3.1 27,933 + SMc02767 0.86 -1.3 27,934 - SMc02767 0.86 -2.8 28,062 + -0.0 28,112 + -3.4 28,113 - -3.2 28,113 - -3.4 28,234 + SMc02766 0.15 -3.5 28,234 + SMc02766 0.15 -3.8 28,234 + SMc02766 0.15 -5.0 28,235 - SMc02766 0.15 -3.4 28,236 + SMc02766 0.15 -2.2 28,258 + SMc02766 0.17 -3.3 28,303 + SMc02766 0.21 -2.5 28,304 - SMc02766 0.21 -2.5 28,480 + SMc02766 0.35 -5.0 28,481 - SMc02766 0.35 -1.3 28,481 - SMc02766 0.35 -5.2 28,481 - SMc02766 0.35 -3.8 28,481 - SMc02766 0.35 -5.4 28,481 - SMc02766 0.35 -5.2 28,532 - SMc02766 0.40 -2.7 28,636 + SMc02766 0.48 -3.8 28,636 + SMc02766 0.48 -4.3 28,636 + SMc02766 0.48 -2.3 28,636 + SMc02766 0.48 -4.7 28,637 - SMc02766 0.48 -5.8 28,640 - SMc02766 0.48 -3.8 28,646 + SMc02766 0.49 -2.0 28,646 + SMc02766 0.49 -4.3 28,647 - SMc02766 0.49 -5.9 28,647 - SMc02766 0.49 -3.9 28,936 + SMc02766 0.73 -4.4 28,936 + SMc02766 0.73 -1.8 28,937 - SMc02766 0.73 -4.1 28,937 - SMc02766 0.73 -3.9 28,937 - SMc02766 0.73 -3.7 28,937 - SMc02766 0.73 -5.4 28,937 - SMc02766 0.73 -4.6
Or see this region's nucleotide sequence