Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02755 and SMc02754 are separated by 156 nucleotides SMc02754 and SMc02753 overlap by 1 nucleotides SMc02753 and SMc02752 are separated by 280 nucleotides SMc02752 and SMc04446 overlap by 4 nucleotides
SMc02755: SMc02755 - S-adenosyl-L-homocysteine hydrolase, at 46,280 to 47,680
SMc02755
SMc02754: SMc02754 - phosphocarrier HPr, at 47,837 to 48,127
SMc02754
SMc02753: SMc02753 - PTS system transporter subunit IIA, at 48,127 to 48,528
SMc02753
SMc02752: SMc02752 - hypothetical protein, at 48,809 to 49,255
SMc02752
SMc04446: SMc04446 - histidine kinase sensory transmembrane protein, at 49,252 to 51,039
SMc04446
Position (kb)
48
49 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 47.265 kb on + strand, within SMc02755 at 47.265 kb on + strand, within SMc02755 at 47.265 kb on + strand, within SMc02755 at 47.266 kb on - strand, within SMc02755 at 47.343 kb on + strand, within SMc02755 at 47.344 kb on - strand, within SMc02755 at 47.352 kb on + strand, within SMc02755 at 47.661 kb on + strand at 47.662 kb on - strand at 47.662 kb on - strand at 47.662 kb on - strand at 47.701 kb on + strand at 47.807 kb on + strand at 47.808 kb on - strand at 47.809 kb on + strand at 47.810 kb on - strand at 47.810 kb on - strand at 47.810 kb on - strand at 47.823 kb on + strand at 47.831 kb on + strand at 48.424 kb on + strand, within SMc02753 at 48.533 kb on - strand at 48.551 kb on + strand at 48.686 kb on + strand at 48.686 kb on + strand at 48.687 kb on - strand at 48.745 kb on + strand at 48.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 47,265 + SMc02755 0.70 -0.0 47,265 + SMc02755 0.70 -0.5 47,265 + SMc02755 0.70 +1.5 47,266 - SMc02755 0.70 -2.2 47,343 + SMc02755 0.76 -2.6 47,344 - SMc02755 0.76 -1.0 47,352 + SMc02755 0.77 -3.0 47,661 + +1.5 47,662 - -0.6 47,662 - -1.9 47,662 - -3.5 47,701 + -1.8 47,807 + +0.2 47,808 - -0.5 47,809 + +0.9 47,810 - -0.8 47,810 - -0.2 47,810 - +1.4 47,823 + -0.2 47,831 + +1.4 48,424 + SMc02753 0.74 -1.4 48,533 - +1.3 48,551 + +1.5 48,686 + -0.2 48,686 + +0.3 48,687 - +2.7 48,745 + -0.1 48,751 + -0.4
Or see this region's nucleotide sequence