Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02706 and SMc02707 are separated by 14 nucleotides SMc02707 and SMc02708 are separated by 257 nucleotides
SMc02706: SMc02706 - hypothetical protein, at 2,555,666 to 2,557,735
SMc02706
SMc02707: SMc02707 - hypothetical protein, at 2,557,750 to 2,558,301
SMc02707
SMc02708: SMc02708 - hypothetical protein, at 2,558,559 to 2,559,551
SMc02708
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-1
0
1
2 at 2557.166 kb on + strand, within SMc02706 at 2557.749 kb on - strand at 2557.940 kb on + strand, within SMc02707 at 2557.943 kb on + strand, within SMc02707 at 2557.944 kb on - strand, within SMc02707 at 2558.428 kb on + strand at 2558.498 kb on + strand at 2558.499 kb on - strand at 2558.499 kb on - strand at 2558.499 kb on - strand at 2558.520 kb on + strand at 2558.521 kb on - strand at 2558.524 kb on + strand at 2558.564 kb on + strand at 2558.598 kb on + strand at 2558.722 kb on - strand, within SMc02708 at 2558.722 kb on - strand, within SMc02708 at 2558.730 kb on + strand, within SMc02708 at 2558.730 kb on + strand, within SMc02708 at 2558.731 kb on - strand, within SMc02708 at 2558.929 kb on - strand, within SMc02708 at 2558.929 kb on - strand, within SMc02708 at 2558.950 kb on - strand, within SMc02708 at 2559.153 kb on + strand, within SMc02708 at 2559.186 kb on + strand, within SMc02708 at 2559.255 kb on + strand, within SMc02708
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,557,166 + SMc02706 0.72 +0.3 2,557,749 - +0.9 2,557,940 + SMc02707 0.34 -1.0 2,557,943 + SMc02707 0.35 -1.4 2,557,944 - SMc02707 0.35 +1.3 2,558,428 + -0.1 2,558,498 + -0.8 2,558,499 - -1.3 2,558,499 - +1.1 2,558,499 - -0.8 2,558,520 + +1.0 2,558,521 - +0.5 2,558,524 + +1.1 2,558,564 + +1.1 2,558,598 + +0.1 2,558,722 - SMc02708 0.16 +2.3 2,558,722 - SMc02708 0.16 -0.5 2,558,730 + SMc02708 0.17 +0.9 2,558,730 + SMc02708 0.17 +0.9 2,558,731 - SMc02708 0.17 -0.1 2,558,929 - SMc02708 0.37 +0.9 2,558,929 - SMc02708 0.37 -0.8 2,558,950 - SMc02708 0.39 +0.4 2,559,153 + SMc02708 0.60 +0.6 2,559,186 + SMc02708 0.63 -0.8 2,559,255 + SMc02708 0.70 +2.4
Or see this region's nucleotide sequence