Strain Fitness in Sinorhizobium meliloti 1021 around SMc02515

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02517 and SMc02516 are separated by 20 nucleotidesSMc02516 and SMc02515 overlap by 1 nucleotidesSMc02515 and SMc02514 are separated by 81 nucleotides SMc02517: SMc02517 - ABC transporter permease, at 3,274,985 to 3,275,851 SMc02517 SMc02516: SMc02516 - ABC transporter permease, at 3,275,872 to 3,276,696 SMc02516 SMc02515: SMc02515 - hypothetical protein, at 3,276,696 to 3,277,115 SMc02515 SMc02514: SMc02514 - periplasmic binding ABC transporter protein, at 3,277,197 to 3,278,921 SMc02514 Position (kb) 3276 3277 3278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3275.780 kb on + strandat 3275.781 kb on - strandat 3275.781 kb on - strandat 3275.781 kb on - strandat 3275.817 kb on - strandat 3275.929 kb on + strandat 3275.929 kb on + strandat 3275.929 kb on + strandat 3275.929 kb on + strandat 3275.930 kb on - strandat 3275.930 kb on - strandat 3276.057 kb on + strand, within SMc02516at 3276.073 kb on + strand, within SMc02516at 3276.100 kb on + strand, within SMc02516at 3276.100 kb on + strand, within SMc02516at 3276.101 kb on - strand, within SMc02516at 3276.101 kb on - strand, within SMc02516at 3276.101 kb on - strand, within SMc02516at 3276.101 kb on - strand, within SMc02516at 3276.151 kb on + strand, within SMc02516at 3276.152 kb on - strand, within SMc02516at 3276.152 kb on - strand, within SMc02516at 3276.152 kb on - strand, within SMc02516at 3276.259 kb on + strand, within SMc02516at 3276.259 kb on + strand, within SMc02516at 3276.391 kb on + strand, within SMc02516at 3276.391 kb on + strand, within SMc02516at 3276.391 kb on + strand, within SMc02516at 3276.391 kb on + strand, within SMc02516at 3276.391 kb on + strand, within SMc02516at 3276.394 kb on - strand, within SMc02516at 3276.438 kb on - strand, within SMc02516at 3276.647 kb on - strandat 3276.647 kb on - strandat 3276.662 kb on - strandat 3276.662 kb on - strandat 3276.760 kb on - strand, within SMc02515at 3276.925 kb on - strand, within SMc02515at 3277.086 kb on + strandat 3277.086 kb on + strandat 3277.107 kb on + strandat 3277.425 kb on + strand, within SMc02514at 3277.560 kb on + strand, within SMc02514at 3277.560 kb on + strand, within SMc02514at 3277.562 kb on + strand, within SMc02514at 3277.563 kb on - strand, within SMc02514at 3277.563 kb on - strand, within SMc02514at 3277.722 kb on + strand, within SMc02514at 3277.723 kb on - strand, within SMc02514at 3277.756 kb on - strand, within SMc02514at 3277.816 kb on - strand, within SMc02514at 3277.854 kb on + strand, within SMc02514at 3277.854 kb on + strand, within SMc02514at 3277.909 kb on - strand, within SMc02514at 3277.923 kb on + strand, within SMc02514at 3277.923 kb on + strand, within SMc02514at 3278.113 kb on - strand, within SMc02514

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,275,780 + -0.0
3,275,781 - -1.9
3,275,781 - +0.8
3,275,781 - -1.9
3,275,817 - -0.0
3,275,929 + -2.2
3,275,929 + -0.7
3,275,929 + +0.4
3,275,929 + -1.3
3,275,930 - -2.4
3,275,930 - -0.9
3,276,057 + SMc02516 0.22 -0.5
3,276,073 + SMc02516 0.24 +0.8
3,276,100 + SMc02516 0.28 -1.3
3,276,100 + SMc02516 0.28 -0.9
3,276,101 - SMc02516 0.28 +1.3
3,276,101 - SMc02516 0.28 -0.8
3,276,101 - SMc02516 0.28 -0.7
3,276,101 - SMc02516 0.28 -1.5
3,276,151 + SMc02516 0.34 -1.0
3,276,152 - SMc02516 0.34 -0.4
3,276,152 - SMc02516 0.34 -1.2
3,276,152 - SMc02516 0.34 +0.8
3,276,259 + SMc02516 0.47 -0.2
3,276,259 + SMc02516 0.47 +0.9
3,276,391 + SMc02516 0.63 +1.4
3,276,391 + SMc02516 0.63 -1.0
3,276,391 + SMc02516 0.63 -1.0
3,276,391 + SMc02516 0.63 -0.7
3,276,391 + SMc02516 0.63 +0.4
3,276,394 - SMc02516 0.63 +3.0
3,276,438 - SMc02516 0.69 -0.6
3,276,647 - -2.0
3,276,647 - -0.6
3,276,662 - -0.2
3,276,662 - -0.7
3,276,760 - SMc02515 0.15 -2.1
3,276,925 - SMc02515 0.55 -1.2
3,277,086 + -0.7
3,277,086 + -0.5
3,277,107 + +0.9
3,277,425 + SMc02514 0.13 +1.7
3,277,560 + SMc02514 0.21 -1.1
3,277,560 + SMc02514 0.21 -0.3
3,277,562 + SMc02514 0.21 -2.9
3,277,563 - SMc02514 0.21 +0.5
3,277,563 - SMc02514 0.21 +2.4
3,277,722 + SMc02514 0.30 +2.2
3,277,723 - SMc02514 0.30 -0.4
3,277,756 - SMc02514 0.32 -1.2
3,277,816 - SMc02514 0.36 -3.3
3,277,854 + SMc02514 0.38 +0.2
3,277,854 + SMc02514 0.38 -2.0
3,277,909 - SMc02514 0.41 -0.7
3,277,923 + SMc02514 0.42 -0.5
3,277,923 + SMc02514 0.42 +0.1
3,278,113 - SMc02514 0.53 -0.3

Or see this region's nucleotide sequence