Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02517 and SMc02516 are separated by 20 nucleotides SMc02516 and SMc02515 overlap by 1 nucleotides SMc02515 and SMc02514 are separated by 81 nucleotides
SMc02517: SMc02517 - ABC transporter permease, at 3,274,985 to 3,275,851
SMc02517
SMc02516: SMc02516 - ABC transporter permease, at 3,275,872 to 3,276,696
SMc02516
SMc02515: SMc02515 - hypothetical protein, at 3,276,696 to 3,277,115
SMc02515
SMc02514: SMc02514 - periplasmic binding ABC transporter protein, at 3,277,197 to 3,278,921
SMc02514
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3275.780 kb on + strand at 3275.781 kb on - strand at 3275.781 kb on - strand at 3275.781 kb on - strand at 3275.817 kb on - strand at 3275.929 kb on + strand at 3275.929 kb on + strand at 3275.929 kb on + strand at 3275.929 kb on + strand at 3275.930 kb on - strand at 3275.930 kb on - strand at 3276.057 kb on + strand, within SMc02516 at 3276.073 kb on + strand, within SMc02516 at 3276.100 kb on + strand, within SMc02516 at 3276.100 kb on + strand, within SMc02516 at 3276.101 kb on - strand, within SMc02516 at 3276.101 kb on - strand, within SMc02516 at 3276.101 kb on - strand, within SMc02516 at 3276.101 kb on - strand, within SMc02516 at 3276.151 kb on + strand, within SMc02516 at 3276.152 kb on - strand, within SMc02516 at 3276.152 kb on - strand, within SMc02516 at 3276.152 kb on - strand, within SMc02516 at 3276.259 kb on + strand, within SMc02516 at 3276.259 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.391 kb on + strand, within SMc02516 at 3276.394 kb on - strand, within SMc02516 at 3276.438 kb on - strand, within SMc02516 at 3276.647 kb on - strand at 3276.647 kb on - strand at 3276.662 kb on - strand at 3276.662 kb on - strand at 3276.760 kb on - strand, within SMc02515 at 3276.925 kb on - strand, within SMc02515 at 3277.086 kb on + strand at 3277.086 kb on + strand at 3277.107 kb on + strand at 3277.425 kb on + strand, within SMc02514 at 3277.560 kb on + strand, within SMc02514 at 3277.560 kb on + strand, within SMc02514 at 3277.562 kb on + strand, within SMc02514 at 3277.563 kb on - strand, within SMc02514 at 3277.563 kb on - strand, within SMc02514 at 3277.722 kb on + strand, within SMc02514 at 3277.723 kb on - strand, within SMc02514 at 3277.756 kb on - strand, within SMc02514 at 3277.816 kb on - strand, within SMc02514 at 3277.854 kb on + strand, within SMc02514 at 3277.854 kb on + strand, within SMc02514 at 3277.909 kb on - strand, within SMc02514 at 3277.923 kb on + strand, within SMc02514 at 3277.923 kb on + strand, within SMc02514 at 3278.113 kb on - strand, within SMc02514
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 3,275,780 + -0.0 3,275,781 - -1.9 3,275,781 - +0.8 3,275,781 - -1.9 3,275,817 - -0.0 3,275,929 + -2.2 3,275,929 + -0.7 3,275,929 + +0.4 3,275,929 + -1.3 3,275,930 - -2.4 3,275,930 - -0.9 3,276,057 + SMc02516 0.22 -0.5 3,276,073 + SMc02516 0.24 +0.8 3,276,100 + SMc02516 0.28 -1.3 3,276,100 + SMc02516 0.28 -0.9 3,276,101 - SMc02516 0.28 +1.3 3,276,101 - SMc02516 0.28 -0.8 3,276,101 - SMc02516 0.28 -0.7 3,276,101 - SMc02516 0.28 -1.5 3,276,151 + SMc02516 0.34 -1.0 3,276,152 - SMc02516 0.34 -0.4 3,276,152 - SMc02516 0.34 -1.2 3,276,152 - SMc02516 0.34 +0.8 3,276,259 + SMc02516 0.47 -0.2 3,276,259 + SMc02516 0.47 +0.9 3,276,391 + SMc02516 0.63 +1.4 3,276,391 + SMc02516 0.63 -1.0 3,276,391 + SMc02516 0.63 -1.0 3,276,391 + SMc02516 0.63 -0.7 3,276,391 + SMc02516 0.63 +0.4 3,276,394 - SMc02516 0.63 +3.0 3,276,438 - SMc02516 0.69 -0.6 3,276,647 - -2.0 3,276,647 - -0.6 3,276,662 - -0.2 3,276,662 - -0.7 3,276,760 - SMc02515 0.15 -2.1 3,276,925 - SMc02515 0.55 -1.2 3,277,086 + -0.7 3,277,086 + -0.5 3,277,107 + +0.9 3,277,425 + SMc02514 0.13 +1.7 3,277,560 + SMc02514 0.21 -1.1 3,277,560 + SMc02514 0.21 -0.3 3,277,562 + SMc02514 0.21 -2.9 3,277,563 - SMc02514 0.21 +0.5 3,277,563 - SMc02514 0.21 +2.4 3,277,722 + SMc02514 0.30 +2.2 3,277,723 - SMc02514 0.30 -0.4 3,277,756 - SMc02514 0.32 -1.2 3,277,816 - SMc02514 0.36 -3.3 3,277,854 + SMc02514 0.38 +0.2 3,277,854 + SMc02514 0.38 -2.0 3,277,909 - SMc02514 0.41 -0.7 3,277,923 + SMc02514 0.42 -0.5 3,277,923 + SMc02514 0.42 +0.1 3,278,113 - SMc02514 0.53 -0.3
Or see this region's nucleotide sequence