Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02305 and SMc02306 are separated by 154 nucleotides SMc02306 and SMc02307 are separated by 64 nucleotides
SMc02305: SMc02305 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 677,941 to 679,233
SMc02305
SMc02306: SMc02306 - hypothetical protein, at 679,388 to 679,828
SMc02306
SMc02307: SMc02307 - histidinol dehydrogenase, at 679,893 to 681,197
SMc02307
Position (kb) 679
680 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 679.273 kb on + strand at 679.274 kb on - strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.329 kb on + strand at 679.330 kb on - strand at 679.484 kb on + strand, within SMc02306 at 680.047 kb on - strand, within SMc02307 at 680.062 kb on + strand, within SMc02307 at 680.075 kb on + strand, within SMc02307 at 680.143 kb on + strand, within SMc02307 at 680.217 kb on + strand, within SMc02307 at 680.218 kb on - strand, within SMc02307 at 680.218 kb on - strand, within SMc02307 at 680.280 kb on + strand, within SMc02307 at 680.280 kb on + strand, within SMc02307 at 680.281 kb on - strand, within SMc02307 at 680.281 kb on - strand, within SMc02307 at 680.445 kb on + strand, within SMc02307 at 680.484 kb on + strand, within SMc02307 at 680.539 kb on - strand, within SMc02307
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 679,273 + +0.1 679,274 - +1.0 679,329 + +1.2 679,329 + +0.1 679,329 + -0.0 679,330 - -3.3 679,484 + SMc02306 0.22 +1.0 680,047 - SMc02307 0.12 -3.3 680,062 + SMc02307 0.13 -1.8 680,075 + SMc02307 0.14 -3.2 680,143 + SMc02307 0.19 -5.6 680,217 + SMc02307 0.25 -4.5 680,218 - SMc02307 0.25 +1.4 680,218 - SMc02307 0.25 -2.5 680,280 + SMc02307 0.30 -3.0 680,280 + SMc02307 0.30 -3.8 680,281 - SMc02307 0.30 -0.2 680,281 - SMc02307 0.30 -3.9 680,445 + SMc02307 0.42 -1.2 680,484 + SMc02307 0.45 -4.2 680,539 - SMc02307 0.50 -3.0
Or see this region's nucleotide sequence