Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02244 and SMc02245 overlap by 25 nucleotides SMc02245 and SMc02246 overlap by 4 nucleotides SMc02246 and SMc02247 are separated by 120 nucleotides
SMc02244: SMc02244 - transmembrane protein, at 607,193 to 608,560
SMc02244
SMc02245: SMc02245 - dihydroorotate dehydrogenase 2, at 608,536 to 609,624
SMc02245
SMc02246: SMc02246 - hypothetical protein, at 609,621 to 609,968
SMc02246
SMc02247: SMc02247 - signal peptide protein, at 610,089 to 610,526
SMc02247
Position (kb) 608
609
610 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 607.552 kb on + strand, within SMc02244 at 607.552 kb on + strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.555 kb on - strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.629 kb on - strand, within SMc02244 at 607.673 kb on + strand, within SMc02244 at 607.674 kb on - strand, within SMc02244 at 607.865 kb on + strand, within SMc02244 at 607.954 kb on + strand, within SMc02244 at 607.955 kb on - strand, within SMc02244 at 608.079 kb on - strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.578 kb on + strand at 608.579 kb on - strand at 608.678 kb on + strand, within SMc02245 at 608.679 kb on - strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.208 kb on - strand, within SMc02245 at 609.280 kb on - strand, within SMc02245 at 609.930 kb on + strand, within SMc02246 at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.953 kb on - strand at 609.953 kb on - strand at 609.953 kb on - strand at 609.954 kb on + strand at 609.955 kb on - strand at 609.959 kb on + strand at 610.176 kb on + strand, within SMc02247 at 610.596 kb on + strand at 610.596 kb on + strand at 610.597 kb on - strand at 610.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 607,552 + SMc02244 0.26 -0.1 607,552 + SMc02244 0.26 +1.0 607,553 - SMc02244 0.26 -0.2 607,553 - SMc02244 0.26 +0.3 607,553 - SMc02244 0.26 -0.4 607,553 - SMc02244 0.26 -0.9 607,553 - SMc02244 0.26 +0.7 607,554 + SMc02244 0.26 -2.7 607,554 + SMc02244 0.26 -3.3 607,555 - SMc02244 0.26 +2.7 607,628 + SMc02244 0.32 -0.8 607,628 + SMc02244 0.32 -2.4 607,628 + SMc02244 0.32 -0.6 607,629 - SMc02244 0.32 +0.5 607,673 + SMc02244 0.35 -1.3 607,674 - SMc02244 0.35 +1.2 607,865 + SMc02244 0.49 -1.8 607,954 + SMc02244 0.56 -0.5 607,955 - SMc02244 0.56 +0.5 608,079 - SMc02244 0.65 -0.3 608,291 + SMc02244 0.80 +0.2 608,291 + SMc02244 0.80 -0.3 608,291 + SMc02244 0.80 +0.4 608,292 - SMc02244 0.80 +0.3 608,292 - SMc02244 0.80 -0.5 608,292 - SMc02244 0.80 +0.4 608,292 - SMc02244 0.80 -1.0 608,292 - SMc02244 0.80 -0.4 608,292 - SMc02244 0.80 -1.1 608,292 - SMc02244 0.80 -0.7 608,292 - SMc02244 0.80 -0.3 608,293 + SMc02244 0.80 -1.5 608,293 + SMc02244 0.80 -0.6 608,293 + SMc02244 0.80 -1.0 608,294 - SMc02244 0.80 +2.4 608,294 - SMc02244 0.80 +1.4 608,578 + +1.4 608,579 - -5.5 608,678 + SMc02245 0.13 -2.6 608,679 - SMc02245 0.13 -1.9 609,167 + SMc02245 0.58 +0.4 609,167 + SMc02245 0.58 -5.4 609,208 - SMc02245 0.62 -1.2 609,280 - SMc02245 0.68 -4.4 609,930 + SMc02246 0.89 -1.4 609,952 + -2.5 609,952 + -4.0 609,952 + -3.2 609,952 + -1.7 609,952 + -3.3 609,953 - +0.2 609,953 - +1.6 609,953 - -0.4 609,954 + +0.4 609,955 - +1.3 609,959 + -1.2 610,176 + SMc02247 0.20 +0.8 610,596 + +1.2 610,596 + -0.5 610,597 - -0.1 610,597 - +0.2
Or see this region's nucleotide sequence