Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02146 and SMc02145 are separated by 91 nucleotides SMc02145 and SMc02144 overlap by 34 nucleotides SMc02144 and SMc02143 overlap by 4 nucleotides
SMc02146: SMc02146 - phosphate-binding periplasmic protein, at 566,715 to 567,749
SMc02146
SMc02145: SMc02145 - signal peptide protein, at 567,841 to 568,446
SMc02145
SMc02144: SMc02144 - phosphate ABC transporter permease, at 568,413 to 569,324
SMc02144
SMc02143: SMc02143 - phosphate ABC transporter permease, at 569,321 to 570,643
SMc02143
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1 at 568.259 kb on - strand, within SMc02145 at 568.372 kb on - strand, within SMc02145 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.346 kb on + strand at 569.502 kb on - strand, within SMc02143 at 569.502 kb on - strand, within SMc02143 at 569.601 kb on - strand, within SMc02143 at 569.603 kb on - strand, within SMc02143 at 569.613 kb on - strand, within SMc02143 at 569.641 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.057 kb on - strand, within SMc02143
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 568,259 - SMc02145 0.69 +0.8 568,372 - SMc02145 0.88 -0.6 568,627 - SMc02144 0.23 -2.5 568,627 - SMc02144 0.23 -0.6 568,627 - SMc02144 0.23 -1.4 568,627 - SMc02144 0.23 +0.0 568,696 - SMc02144 0.31 +1.4 568,696 - SMc02144 0.31 -2.4 569,280 + +0.0 569,280 + +0.4 569,280 + +0.1 569,280 + +1.2 569,346 + +0.4 569,502 - SMc02143 0.14 +1.4 569,502 - SMc02143 0.14 -0.7 569,601 - SMc02143 0.21 -1.3 569,603 - SMc02143 0.21 -0.6 569,613 - SMc02143 0.22 +1.4 569,641 - SMc02143 0.24 -0.9 570,000 - SMc02143 0.51 +1.4 570,000 - SMc02143 0.51 -1.4 570,000 - SMc02143 0.51 +0.4 570,057 - SMc02143 0.56 +1.4
Or see this region's nucleotide sequence