Strain Fitness in Sinorhizobium meliloti 1021 around SMc02105

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02107 and SMc02106 are separated by 253 nucleotidesSMc02106 and SMc02105 are separated by 35 nucleotidesSMc02105 and SMc02104 are separated by 4 nucleotidesSMc02104 and SMc02103 are separated by 13 nucleotides SMc02107: SMc02107 - hypothetical protein, at 1,603,172 to 1,603,507 SMc02107 SMc02106: SMc02106 - hypothetical protein, at 1,603,761 to 1,604,180 SMc02106 SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403 SMc02105 SMc02104: SMc02104 - hypothetical protein, at 1,605,408 to 1,606,133 SMc02104 SMc02103: SMc02103 - hypothetical protein, at 1,606,147 to 1,606,611 SMc02103 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1603.343 kb on - strand, within SMc02107at 1603.514 kb on - strandat 1603.525 kb on - strandat 1603.558 kb on + strandat 1603.634 kb on + strandat 1603.762 kb on + strandat 1603.801 kb on - strandat 1603.801 kb on - strandat 1603.801 kb on - strandat 1604.142 kb on + strandat 1604.143 kb on - strandat 1604.143 kb on - strandat 1604.157 kb on - strandat 1604.171 kb on - strandat 1604.308 kb on - strandat 1604.377 kb on - strand, within SMc02105at 1604.445 kb on + strand, within SMc02105at 1604.463 kb on + strand, within SMc02105at 1604.464 kb on - strand, within SMc02105at 1604.520 kb on + strand, within SMc02105at 1604.520 kb on + strand, within SMc02105at 1604.629 kb on - strand, within SMc02105at 1604.629 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.683 kb on - strand, within SMc02105at 1604.748 kb on - strand, within SMc02105at 1604.839 kb on - strand, within SMc02105at 1604.872 kb on + strand, within SMc02105at 1605.135 kb on + strand, within SMc02105at 1605.136 kb on - strand, within SMc02105at 1605.136 kb on - strand, within SMc02105at 1605.162 kb on + strand, within SMc02105at 1605.163 kb on - strand, within SMc02105at 1605.163 kb on - strand, within SMc02105at 1605.273 kb on + strand, within SMc02105at 1605.274 kb on - strand, within SMc02105at 1605.297 kb on + strandat 1605.298 kb on - strandat 1605.298 kb on - strandat 1605.298 kb on - strandat 1605.378 kb on - strandat 1605.378 kb on - strandat 1606.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,603,343 - SMc02107 0.51 -1.3
1,603,514 - +1.6
1,603,525 - -0.2
1,603,558 + +0.2
1,603,634 + -0.0
1,603,762 + -0.0
1,603,801 - -0.7
1,603,801 - +0.3
1,603,801 - -0.4
1,604,142 + +1.1
1,604,143 - +1.0
1,604,143 - +2.5
1,604,157 - -1.5
1,604,171 - -0.6
1,604,308 - -0.0
1,604,377 - SMc02105 0.14 -0.8
1,604,445 + SMc02105 0.19 +3.2
1,604,463 + SMc02105 0.21 +0.4
1,604,464 - SMc02105 0.21 +1.5
1,604,520 + SMc02105 0.26 +0.4
1,604,520 + SMc02105 0.26 +0.3
1,604,629 - SMc02105 0.35 +0.2
1,604,629 - SMc02105 0.35 +1.1
1,604,683 - SMc02105 0.39 +0.8
1,604,683 - SMc02105 0.39 +0.0
1,604,683 - SMc02105 0.39 +0.1
1,604,683 - SMc02105 0.39 -0.0
1,604,748 - SMc02105 0.45 -0.1
1,604,839 - SMc02105 0.52 +0.3
1,604,872 + SMc02105 0.55 -1.1
1,605,135 + SMc02105 0.77 -0.4
1,605,136 - SMc02105 0.77 +0.1
1,605,136 - SMc02105 0.77 -0.2
1,605,162 + SMc02105 0.80 -0.1
1,605,163 - SMc02105 0.80 -1.8
1,605,163 - SMc02105 0.80 +0.6
1,605,273 + SMc02105 0.89 -1.0
1,605,274 - SMc02105 0.89 -0.1
1,605,297 + +0.5
1,605,298 - +0.9
1,605,298 - +1.2
1,605,298 - +0.8
1,605,378 - -0.4
1,605,378 - -1.1
1,606,125 - -1.6

Or see this region's nucleotide sequence