Strain Fitness in Sinorhizobium meliloti 1021 around SMc02079

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02080 and SMc02079 are separated by 470 nucleotidesSMc02079 and SMc02078 are separated by 370 nucleotides SMc02080: SMc02080 - valyl-tRNA synthetase, at 1,632,336 to 1,635,179 SMc02080 SMc02079: SMc02079 - hypothetical protein, at 1,635,650 to 1,636,939 SMc02079 SMc02078: SMc02078 - exopolysaccharide biosynthesis regulatory protein, at 1,637,310 to 1,638,116 SMc02078 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 1635.244 kb on + strandat 1635.292 kb on + strandat 1635.293 kb on - strandat 1635.293 kb on - strandat 1635.473 kb on + strandat 1635.586 kb on - strandat 1635.677 kb on - strandat 1635.748 kb on + strandat 1635.749 kb on - strandat 1635.752 kb on - strandat 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.804 kb on - strand, within SMc02079at 1635.804 kb on - strand, within SMc02079at 1635.820 kb on + strand, within SMc02079at 1635.821 kb on - strand, within SMc02079at 1635.834 kb on + strand, within SMc02079at 1635.865 kb on - strand, within SMc02079at 1635.865 kb on - strand, within SMc02079at 1635.932 kb on + strand, within SMc02079at 1635.932 kb on + strand, within SMc02079at 1635.933 kb on - strand, within SMc02079at 1635.933 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.976 kb on + strand, within SMc02079at 1635.976 kb on + strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.996 kb on - strand, within SMc02079at 1635.996 kb on - strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.086 kb on - strand, within SMc02079at 1636.103 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.106 kb on - strand, within SMc02079at 1636.127 kb on + strand, within SMc02079at 1636.139 kb on - strand, within SMc02079at 1636.139 kb on - strand, within SMc02079at 1636.155 kb on - strand, within SMc02079at 1636.155 kb on - strand, within SMc02079at 1636.196 kb on + strand, within SMc02079at 1636.197 kb on - strand, within SMc02079at 1636.197 kb on - strand, within SMc02079at 1636.197 kb on - strand, within SMc02079at 1636.305 kb on - strand, within SMc02079at 1636.328 kb on + strand, within SMc02079at 1636.330 kb on + strand, within SMc02079at 1636.331 kb on - strand, within SMc02079at 1636.437 kb on - strand, within SMc02079at 1636.588 kb on + strandat 1636.769 kb on - strand, within SMc02079at 1636.814 kb on - strandat 1636.953 kb on - strandat 1637.005 kb on + strandat 1637.006 kb on - strandat 1637.007 kb on + strandat 1637.008 kb on - strandat 1637.059 kb on + strandat 1637.059 kb on + strandat 1637.059 kb on + strandat 1637.080 kb on + strandat 1637.080 kb on + strandat 1637.080 kb on + strandat 1637.190 kb on + strandat 1637.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,635,244 + +1.0
1,635,292 + +2.2
1,635,293 - -0.1
1,635,293 - -4.0
1,635,473 + -1.0
1,635,586 - +0.2
1,635,677 - +0.2
1,635,748 + +0.1
1,635,749 - +1.2
1,635,752 - +1.2
1,635,803 + SMc02079 0.12 +0.3
1,635,803 + SMc02079 0.12 -0.5
1,635,803 + SMc02079 0.12 +0.8
1,635,803 + SMc02079 0.12 +5.8
1,635,804 - SMc02079 0.12 +0.7
1,635,804 - SMc02079 0.12 -0.2
1,635,820 + SMc02079 0.13 +1.0
1,635,821 - SMc02079 0.13 +0.1
1,635,834 + SMc02079 0.14 +0.6
1,635,865 - SMc02079 0.17 -0.6
1,635,865 - SMc02079 0.17 +1.3
1,635,932 + SMc02079 0.22 +0.0
1,635,932 + SMc02079 0.22 +0.7
1,635,933 - SMc02079 0.22 +1.6
1,635,933 - SMc02079 0.22 +0.6
1,635,956 - SMc02079 0.24 +0.3
1,635,956 - SMc02079 0.24 -0.2
1,635,956 - SMc02079 0.24 -0.1
1,635,976 + SMc02079 0.25 +0.2
1,635,976 + SMc02079 0.25 +0.5
1,635,977 - SMc02079 0.25 -0.4
1,635,977 - SMc02079 0.25 +0.8
1,635,977 - SMc02079 0.25 +0.3
1,635,977 - SMc02079 0.25 -1.3
1,635,985 + SMc02079 0.26 +0.9
1,635,985 + SMc02079 0.26 +1.2
1,635,985 + SMc02079 0.26 -0.4
1,635,985 + SMc02079 0.26 -0.5
1,635,996 - SMc02079 0.27 +1.2
1,635,996 - SMc02079 0.27 +1.3
1,636,085 + SMc02079 0.34 +0.0
1,636,085 + SMc02079 0.34 +0.4
1,636,085 + SMc02079 0.34 +0.6
1,636,085 + SMc02079 0.34 +1.7
1,636,086 - SMc02079 0.34 +0.4
1,636,103 + SMc02079 0.35 -1.4
1,636,105 + SMc02079 0.35 +0.0
1,636,105 + SMc02079 0.35 +0.9
1,636,105 + SMc02079 0.35 -0.5
1,636,105 + SMc02079 0.35 -0.1
1,636,106 - SMc02079 0.35 -0.2
1,636,127 + SMc02079 0.37 +0.4
1,636,139 - SMc02079 0.38 +1.1
1,636,139 - SMc02079 0.38 +0.5
1,636,155 - SMc02079 0.39 +0.7
1,636,155 - SMc02079 0.39 +0.1
1,636,196 + SMc02079 0.42 +0.6
1,636,197 - SMc02079 0.42 +0.7
1,636,197 - SMc02079 0.42 +0.9
1,636,197 - SMc02079 0.42 +2.2
1,636,305 - SMc02079 0.51 +0.3
1,636,328 + SMc02079 0.53 +0.2
1,636,330 + SMc02079 0.53 +4.2
1,636,331 - SMc02079 0.53 +0.4
1,636,437 - SMc02079 0.61 +1.7
1,636,588 + -0.8
1,636,769 - SMc02079 0.87 -1.2
1,636,814 - +0.3
1,636,953 - +0.0
1,637,005 + +0.5
1,637,006 - +0.4
1,637,007 + +0.9
1,637,008 - -1.5
1,637,059 + +0.0
1,637,059 + +0.5
1,637,059 + -0.1
1,637,080 + +0.1
1,637,080 + -0.8
1,637,080 + -3.2
1,637,190 + -1.2
1,637,246 + +0.3

Or see this region's nucleotide sequence