Strain Fitness in Sinorhizobium meliloti 1021 around SMc01959

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01994 and SMc01959 overlap by 4 nucleotidesSMc01959 and SMc01960 are separated by 354 nucleotides SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873 SMc01994 SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241 SMc01959 SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162 SMc01960 Position (kb) 2681 2682 2683Strain fitness (log2 ratio) -2 -1 0 1at 2680.905 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.930 kb on - strandat 2680.930 kb on - strandat 2680.932 kb on - strandat 2682.288 kb on + strandat 2682.288 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.473 kb on + strandat 2682.593 kb on - strandat 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.852 kb on - strand, within SMc01960at 2682.852 kb on - strand, within SMc01960at 2682.918 kb on + strand, within SMc01960at 2682.919 kb on - strand, within SMc01960at 2683.020 kb on + strand, within SMc01960at 2683.022 kb on + strand, within SMc01960at 2683.022 kb on + strand, within SMc01960

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,680,905 + -0.2
2,680,929 + -0.8
2,680,929 + -2.0
2,680,929 + -2.0
2,680,930 - +0.8
2,680,930 - +0.4
2,680,932 - +0.3
2,682,288 + -0.9
2,682,288 + -0.3
2,682,292 + -2.0
2,682,292 + +1.0
2,682,292 + +1.3
2,682,473 + +0.4
2,682,593 - -0.5
2,682,851 + SMc01960 0.45 -1.1
2,682,851 + SMc01960 0.45 -0.5
2,682,851 + SMc01960 0.45 +0.2
2,682,851 + SMc01960 0.45 -0.6
2,682,851 + SMc01960 0.45 -1.0
2,682,852 - SMc01960 0.45 -0.4
2,682,852 - SMc01960 0.45 -0.3
2,682,918 + SMc01960 0.57 -0.9
2,682,919 - SMc01960 0.57 -0.0
2,683,020 + SMc01960 0.75 -1.8
2,683,022 + SMc01960 0.75 +0.7
2,683,022 + SMc01960 0.75 -1.0

Or see this region's nucleotide sequence