Strain Fitness in Sinorhizobium meliloti 1021 around SMc01726

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01727 and SMc01726 are separated by 194 nucleotidesSMc01726 and SMc01725 are separated by 289 nucleotides SMc01727: SMc01727 - hypothetical protein, at 475,278 to 476,048 SMc01727 SMc01726: SMc01726 - acetylglutamate kinase, at 476,243 to 477,130 SMc01726 SMc01725: SMc01725 - hypothetical protein, at 477,420 to 478,133 SMc01725 Position (kb) 476 477 478Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 475.275 kb on - strandat 475.275 kb on - strandat 475.275 kb on - strandat 475.345 kb on - strandat 475.542 kb on + strand, within SMc01727at 475.813 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.975 kb on - strandat 476.034 kb on + strandat 476.122 kb on + strandat 476.188 kb on + strandat 476.188 kb on + strandat 476.189 kb on - strandat 476.556 kb on + strand, within SMc01726at 476.557 kb on - strand, within SMc01726at 476.557 kb on - strand, within SMc01726at 476.557 kb on - strand, within SMc01726at 477.076 kb on - strandat 477.076 kb on - strandat 477.203 kb on + strandat 477.204 kb on - strandat 477.480 kb on + strandat 477.480 kb on + strandat 477.481 kb on - strandat 477.481 kb on - strandat 477.481 kb on - strandat 477.481 kb on - strandat 477.481 kb on - strandat 477.603 kb on + strand, within SMc01725at 477.604 kb on - strand, within SMc01725at 477.730 kb on + strand, within SMc01725at 477.797 kb on + strand, within SMc01725

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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475,275 - +0.1
475,275 - -0.6
475,275 - -0.1
475,345 - +0.9
475,542 + SMc01727 0.34 -0.8
475,813 - SMc01727 0.69 +0.2
475,910 - SMc01727 0.82 +0.1
475,910 - SMc01727 0.82 -0.3
475,910 - SMc01727 0.82 +0.4
475,975 - -2.1
476,034 + -1.2
476,122 + +0.5
476,188 + -0.4
476,188 + -0.2
476,189 - -0.1
476,556 + SMc01726 0.35 -5.3
476,557 - SMc01726 0.35 -3.9
476,557 - SMc01726 0.35 -3.1
476,557 - SMc01726 0.35 -2.8
477,076 - +1.5
477,076 - -4.3
477,203 + -0.9
477,204 - -0.3
477,480 + -1.0
477,480 + -0.6
477,481 - +0.5
477,481 - -0.1
477,481 - -0.3
477,481 - -0.1
477,481 - +1.5
477,603 + SMc01725 0.26 +0.3
477,604 - SMc01725 0.26 +1.0
477,730 + SMc01725 0.43 +0.5
477,797 + SMc01725 0.53 -0.5

Or see this region's nucleotide sequence