Strain Fitness in Sinorhizobium meliloti 1021 around SMc01635

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01633 and SMc01634 overlap by 1 nucleotidesSMc01634 and SMc01635 are separated by 4 nucleotidesSMc01635 and SMc01636 are separated by 91 nucleotides SMc01633: SMc01633 - ABC transporter permease, at 2,425,834 to 2,426,700 SMc01633 SMc01634: SMc01634 - ABC transporter permease, at 2,426,700 to 2,427,518 SMc01634 SMc01635: SMc01635 - oxidoreductase, at 2,427,523 to 2,428,284 SMc01635 SMc01636: SMc01636 - transcriptional regulator, at 2,428,376 to 2,429,347 SMc01636 Position (kb) 2427 2428 2429Strain fitness (log2 ratio) -2 -1 0 1 2at 2426.736 kb on + strandat 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.232 kb on - strand, within SMc01634at 2427.381 kb on + strand, within SMc01634at 2427.382 kb on - strand, within SMc01634at 2427.460 kb on + strandat 2427.460 kb on + strandat 2427.461 kb on - strandat 2427.464 kb on + strandat 2427.464 kb on + strandat 2427.464 kb on + strandat 2427.961 kb on + strand, within SMc01635at 2427.962 kb on - strand, within SMc01635at 2427.982 kb on + strand, within SMc01635at 2428.037 kb on - strand, within SMc01635at 2428.045 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.144 kb on + strand, within SMc01635at 2428.145 kb on - strandat 2428.145 kb on - strand, within SMc01635at 2428.234 kb on + strandat 2428.234 kb on + strandat 2428.234 kb on + strandat 2428.235 kb on - strandat 2428.235 kb on - strandat 2428.484 kb on + strand, within SMc01636at 2428.552 kb on - strand, within SMc01636at 2428.552 kb on - strand, within SMc01636at 2428.767 kb on + strand, within SMc01636at 2428.768 kb on - strand, within SMc01636at 2428.768 kb on - strand, within SMc01636at 2428.768 kb on - strand, within SMc01636at 2428.921 kb on - strand, within SMc01636at 2429.220 kb on + strand, within SMc01636at 2429.220 kb on + strand, within SMc01636at 2429.221 kb on - strand, within SMc01636

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,426,736 + -0.6
2,427,232 - SMc01634 0.65 +0.3
2,427,232 - SMc01634 0.65 -0.4
2,427,232 - SMc01634 0.65 -1.4
2,427,232 - SMc01634 0.65 -1.1
2,427,232 - SMc01634 0.65 -0.0
2,427,381 + SMc01634 0.83 +0.8
2,427,382 - SMc01634 0.83 -0.7
2,427,460 + +0.6
2,427,460 + +1.0
2,427,461 - +0.7
2,427,464 + +1.1
2,427,464 + +1.2
2,427,464 + -0.4
2,427,961 + SMc01635 0.57 +0.6
2,427,962 - SMc01635 0.58 +0.0
2,427,982 + SMc01635 0.60 +0.7
2,428,037 - SMc01635 0.67 +0.7
2,428,045 + SMc01635 0.69 +1.8
2,428,144 + SMc01635 0.81 -0.8
2,428,144 + SMc01635 0.81 -0.0
2,428,144 + SMc01635 0.81 -1.8
2,428,145 - +0.2
2,428,145 - SMc01635 0.82 -1.6
2,428,234 + -0.9
2,428,234 + -0.6
2,428,234 + +0.7
2,428,235 - +0.9
2,428,235 - +0.9
2,428,484 + SMc01636 0.11 -0.6
2,428,552 - SMc01636 0.18 -1.0
2,428,552 - SMc01636 0.18 -0.6
2,428,767 + SMc01636 0.40 +0.0
2,428,768 - SMc01636 0.40 -0.4
2,428,768 - SMc01636 0.40 -0.1
2,428,768 - SMc01636 0.40 -1.8
2,428,921 - SMc01636 0.56 +0.7
2,429,220 + SMc01636 0.87 +2.2
2,429,220 + SMc01636 0.87 +1.2
2,429,221 - SMc01636 0.87 -2.2

Or see this region's nucleotide sequence