Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01568 and SMc01569 are separated by 325 nucleotides SMc01569 and SMc01570 are separated by 38 nucleotides
SMc01568: SMc01568 - hypothetical protein, at 2,511,054 to 2,511,503
SMc01568
SMc01569: SMc01569 - carbamoyl phosphate synthase small subunit, at 2,511,829 to 2,513,034
SMc01569
SMc01570: SMc01570 - transcriptional regulator, at 2,513,073 to 2,513,963
SMc01570
Position (kb)
2511
2512
2513
2514 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2510.831 kb on - strand at 2510.831 kb on - strand at 2510.894 kb on - strand at 2510.894 kb on - strand at 2510.894 kb on - strand at 2510.894 kb on - strand at 2510.894 kb on - strand at 2511.299 kb on - strand, within SMc01568 at 2511.508 kb on + strand at 2511.508 kb on + strand at 2511.508 kb on + strand at 2511.509 kb on - strand at 2511.509 kb on - strand at 2511.540 kb on - strand at 2511.597 kb on + strand at 2511.629 kb on + strand at 2511.649 kb on + strand at 2511.711 kb on + strand at 2511.997 kb on + strand, within SMc01569 at 2512.444 kb on + strand, within SMc01569 at 2513.202 kb on - strand, within SMc01570 at 2513.447 kb on - strand, within SMc01570 at 2513.447 kb on - strand, within SMc01570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,510,831 - -1.8 2,510,831 - -0.6 2,510,894 - +2.6 2,510,894 - -0.5 2,510,894 - +0.0 2,510,894 - +0.8 2,510,894 - +0.8 2,511,299 - SMc01568 0.54 -2.1 2,511,508 + -0.5 2,511,508 + +0.9 2,511,508 + -0.4 2,511,509 - -0.7 2,511,509 - -1.1 2,511,540 - -1.9 2,511,597 + +0.3 2,511,629 + -1.6 2,511,649 + -1.4 2,511,711 + -0.2 2,511,997 + SMc01569 0.14 -0.7 2,512,444 + SMc01569 0.51 -0.7 2,513,202 - SMc01570 0.14 -0.1 2,513,447 - SMc01570 0.42 -2.5 2,513,447 - SMc01570 0.42 -0.2
Or see this region's nucleotide sequence