Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01540 and SMc01541 are separated by 136 nucleotides
SMc01540: SMc01540 - hypothetical protein, at 2,476,241 to 2,476,462
SMc01540
SMc01541: SMc01541 - hypothetical protein, at 2,476,599 to 2,477,780
SMc01541
Position (kb)
2476
2477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2475.350 kb on - strand at 2475.389 kb on + strand at 2475.691 kb on + strand at 2475.692 kb on - strand at 2475.692 kb on - strand at 2475.692 kb on - strand at 2475.695 kb on - strand at 2475.784 kb on - strand at 2475.794 kb on + strand at 2475.794 kb on + strand at 2475.794 kb on + strand at 2475.916 kb on + strand at 2475.917 kb on - strand at 2475.917 kb on - strand at 2475.917 kb on - strand at 2475.975 kb on + strand at 2476.242 kb on + strand at 2476.347 kb on + strand, within SMc01540 at 2476.381 kb on + strand, within SMc01540 at 2476.456 kb on + strand at 2476.457 kb on - strand at 2476.499 kb on + strand at 2476.500 kb on - strand at 2476.502 kb on - strand at 2476.682 kb on - strand at 2477.035 kb on + strand, within SMc01541 at 2477.075 kb on + strand, within SMc01541 at 2477.076 kb on - strand, within SMc01541 at 2477.076 kb on - strand, within SMc01541 at 2477.076 kb on - strand, within SMc01541 at 2477.127 kb on + strand, within SMc01541 at 2477.127 kb on + strand, within SMc01541 at 2477.128 kb on - strand, within SMc01541 at 2477.144 kb on + strand, within SMc01541 at 2477.144 kb on + strand, within SMc01541 at 2477.145 kb on - strand, within SMc01541 at 2477.145 kb on - strand, within SMc01541
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,475,350 - +5.2 2,475,389 + -1.0 2,475,691 + -1.1 2,475,692 - +1.0 2,475,692 - -0.2 2,475,692 - -0.6 2,475,695 - -0.7 2,475,784 - -3.2 2,475,794 + -0.9 2,475,794 + +0.2 2,475,794 + -0.0 2,475,916 + -0.1 2,475,917 - +0.8 2,475,917 - -0.2 2,475,917 - +0.9 2,475,975 + +2.8 2,476,242 + +0.7 2,476,347 + SMc01540 0.48 -0.3 2,476,381 + SMc01540 0.63 -1.1 2,476,456 + -0.1 2,476,457 - -0.3 2,476,499 + -0.1 2,476,500 - -1.4 2,476,502 - -0.7 2,476,682 - +0.3 2,477,035 + SMc01541 0.37 -1.9 2,477,075 + SMc01541 0.40 -0.5 2,477,076 - SMc01541 0.40 +0.3 2,477,076 - SMc01541 0.40 -0.5 2,477,076 - SMc01541 0.40 -0.2 2,477,127 + SMc01541 0.45 +0.5 2,477,127 + SMc01541 0.45 +0.1 2,477,128 - SMc01541 0.45 +1.0 2,477,144 + SMc01541 0.46 -0.9 2,477,144 + SMc01541 0.46 +0.3 2,477,145 - SMc01541 0.46 +0.9 2,477,145 - SMc01541 0.46 -0.6
Or see this region's nucleotide sequence