Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01447 and SMc01448 are separated by 282 nucleotides SMc01448 and SMc01449 are separated by 114 nucleotides SMc01449 and SMc01450 are separated by 711 nucleotides
SMc01447: SMc01447 - hypothetical protein, at 2,289,596 to 2,289,802
SMc01447
SMc01448: SMc01448 - hypothetical protein, at 2,290,085 to 2,290,531
SMc01448
SMc01449: SMc01449 - hypothetical protein, at 2,290,646 to 2,290,954
SMc01449
SMc01450: SMc01450 - hypothetical protein, at 2,291,666 to 2,292,181
SMc01450
Position (kb)
2290
2291 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2289.700 kb on - strand, within SMc01447 at 2289.861 kb on - strand at 2289.924 kb on + strand at 2289.924 kb on + strand at 2289.924 kb on + strand at 2289.924 kb on + strand at 2289.925 kb on - strand at 2289.966 kb on - strand at 2290.135 kb on + strand, within SMc01448 at 2290.135 kb on + strand, within SMc01448 at 2290.136 kb on - strand, within SMc01448 at 2290.290 kb on - strand, within SMc01448 at 2290.382 kb on - strand, within SMc01448 at 2290.419 kb on + strand, within SMc01448 at 2290.420 kb on - strand, within SMc01448 at 2290.467 kb on + strand, within SMc01448 at 2290.551 kb on - strand at 2290.689 kb on + strand, within SMc01449 at 2290.689 kb on + strand, within SMc01449 at 2290.690 kb on - strand, within SMc01449 at 2290.690 kb on - strand, within SMc01449 at 2290.690 kb on - strand, within SMc01449 at 2290.690 kb on - strand, within SMc01449 at 2290.856 kb on - strand, within SMc01449 at 2290.923 kb on + strand, within SMc01449 at 2290.924 kb on - strand at 2290.944 kb on + strand at 2290.944 kb on + strand at 2291.081 kb on - strand at 2291.486 kb on + strand at 2291.487 kb on - strand at 2291.488 kb on + strand at 2291.488 kb on + strand at 2291.488 kb on + strand at 2291.488 kb on + strand at 2291.488 kb on + strand at 2291.489 kb on - strand at 2291.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,289,700 - SMc01447 0.50 +0.2 2,289,861 - -0.2 2,289,924 + +1.0 2,289,924 + -0.5 2,289,924 + +0.2 2,289,924 + -0.2 2,289,925 - +0.9 2,289,966 - -2.0 2,290,135 + SMc01448 0.11 -0.5 2,290,135 + SMc01448 0.11 +0.6 2,290,136 - SMc01448 0.11 -0.7 2,290,290 - SMc01448 0.46 -1.7 2,290,382 - SMc01448 0.66 +0.7 2,290,419 + SMc01448 0.75 +0.7 2,290,420 - SMc01448 0.75 +0.0 2,290,467 + SMc01448 0.85 +0.5 2,290,551 - +0.2 2,290,689 + SMc01449 0.14 +0.2 2,290,689 + SMc01449 0.14 +1.8 2,290,690 - SMc01449 0.14 +0.7 2,290,690 - SMc01449 0.14 -1.5 2,290,690 - SMc01449 0.14 +0.5 2,290,690 - SMc01449 0.14 +0.7 2,290,856 - SMc01449 0.68 -0.4 2,290,923 + SMc01449 0.90 +0.2 2,290,924 - +0.2 2,290,944 + +2.4 2,290,944 + +0.3 2,291,081 - -0.5 2,291,486 + +0.6 2,291,487 - -2.1 2,291,488 + +1.8 2,291,488 + +3.2 2,291,488 + +0.3 2,291,488 + -0.1 2,291,488 + -1.6 2,291,489 - +1.2 2,291,514 + +0.8
Or see this region's nucleotide sequence