Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01144 and SMc01143 are separated by 257 nucleotides SMc01143 and SMc01142 are separated by 158 nucleotides
SMc01144: SMc01144 - ribonuclease PH, at 406,593 to 407,312
SMc01144
SMc01143: SMc01143 - heat-inducible transcription repressor, at 407,570 to 408,649
SMc01143
SMc01142: SMc01142 - heat shock protein GrpE, at 408,808 to 409,434
SMc01142
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.594 kb on + strand at 406.602 kb on + strand at 406.603 kb on - strand at 406.780 kb on + strand, within SMc01144 at 406.781 kb on - strand, within SMc01144 at 406.781 kb on - strand, within SMc01144 at 407.224 kb on - strand, within SMc01144 at 407.445 kb on + strand at 407.446 kb on - strand at 407.457 kb on + strand at 407.530 kb on + strand at 407.530 kb on + strand at 407.531 kb on - strand at 407.531 kb on - strand at 407.531 kb on - strand at 407.532 kb on + strand at 407.532 kb on + strand at 407.533 kb on - strand at 407.533 kb on - strand at 407.533 kb on - strand at 407.552 kb on + strand at 407.553 kb on - strand at 407.575 kb on - strand at 407.657 kb on + strand at 407.658 kb on - strand at 407.658 kb on - strand at 407.985 kb on + strand, within SMc01143 at 407.986 kb on - strand, within SMc01143 at 407.986 kb on - strand, within SMc01143 at 408.270 kb on + strand, within SMc01143 at 408.382 kb on + strand, within SMc01143 at 408.383 kb on - strand, within SMc01143 at 408.383 kb on - strand, within SMc01143 at 408.383 kb on - strand, within SMc01143 at 408.587 kb on + strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.614 kb on + strand at 408.615 kb on - strand at 408.615 kb on - strand at 408.615 kb on - strand at 408.615 kb on - strand at 409.433 kb on - strand at 409.591 kb on - strand at 409.591 kb on - strand at 409.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 406,594 + -0.4 406,602 + -0.1 406,603 - -0.3 406,780 + SMc01144 0.26 -0.1 406,781 - SMc01144 0.26 -0.9 406,781 - SMc01144 0.26 -0.6 407,224 - SMc01144 0.88 -0.0 407,445 + -0.2 407,446 - -0.8 407,457 + -2.2 407,530 + -0.4 407,530 + -0.0 407,531 - -0.9 407,531 - +0.3 407,531 - +0.0 407,532 + -0.0 407,532 + -0.1 407,533 - -0.7 407,533 - -1.2 407,533 - +0.8 407,552 + -0.3 407,553 - +0.1 407,575 - -0.5 407,657 + +2.0 407,658 - -0.3 407,658 - -0.4 407,985 + SMc01143 0.38 +0.8 407,986 - SMc01143 0.39 -0.2 407,986 - SMc01143 0.39 -0.2 408,270 + SMc01143 0.65 +0.3 408,382 + SMc01143 0.75 -0.4 408,383 - SMc01143 0.75 +1.5 408,383 - SMc01143 0.75 +1.5 408,383 - SMc01143 0.75 -1.9 408,587 + +1.1 408,588 - +0.7 408,588 - +0.8 408,588 - +0.6 408,614 + -0.4 408,615 - +1.9 408,615 - +0.1 408,615 - +1.1 408,615 - -0.1 409,433 - -0.1 409,591 - +0.2 409,591 - +0.5 409,636 - +1.5
Or see this region's nucleotide sequence