Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00974 and SMc00973 overlap by 4 nucleotides SMc00973 and SMc00972 are separated by 51 nucleotides SMc00972 and SMc00971 are separated by 196 nucleotides
SMc00974: SMc00974 - RNA methyltransferase, at 965,799 to 967,046
SMc00974
SMc00973: SMc00973 - hypothetical protein, at 967,043 to 967,798
SMc00973
SMc00972: SMc00972 - 1-deoxy-D-xylulose-5-phosphate synthase, at 967,850 to 969,787
SMc00972
SMc00971: SMc00971 - hypothetical protein, at 969,984 to 970,907
SMc00971
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 967.400 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.787 kb on - strand at 967.787 kb on - strand at 969.855 kb on - strand at 969.886 kb on - strand at 970.002 kb on + strand at 970.002 kb on + strand at 970.110 kb on - strand, within SMc00971 at 970.110 kb on - strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.204 kb on - strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.265 kb on - strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.334 kb on - strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.341 kb on - strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.347 kb on - strand, within SMc00971 at 970.433 kb on + strand, within SMc00971 at 970.434 kb on - strand, within SMc00971 at 970.660 kb on + strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 970.661 kb on - strand, within SMc00971
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 967,400 - SMc00973 0.47 +0.3 967,606 - SMc00973 0.74 +0.8 967,606 - SMc00973 0.74 +1.2 967,787 - +0.4 967,787 - -0.7 969,855 - -0.3 969,886 - +0.2 970,002 + -0.3 970,002 + -0.2 970,110 - SMc00971 0.14 -0.1 970,110 - SMc00971 0.14 +0.3 970,203 + SMc00971 0.24 -0.2 970,203 + SMc00971 0.24 -0.9 970,204 - SMc00971 0.24 -1.1 970,264 + SMc00971 0.30 -1.3 970,264 + SMc00971 0.30 -0.1 970,265 - SMc00971 0.30 -1.0 970,333 + SMc00971 0.38 -0.2 970,333 + SMc00971 0.38 -0.7 970,333 + SMc00971 0.38 -0.8 970,333 + SMc00971 0.38 +0.4 970,334 - SMc00971 0.38 +0.6 970,340 + SMc00971 0.39 +0.6 970,340 + SMc00971 0.39 -0.5 970,340 + SMc00971 0.39 -0.2 970,341 - SMc00971 0.39 +0.3 970,346 + SMc00971 0.39 +0.3 970,346 + SMc00971 0.39 +0.3 970,347 - SMc00971 0.39 -2.0 970,433 + SMc00971 0.49 -0.7 970,434 - SMc00971 0.49 +0.3 970,660 + SMc00971 0.73 -0.8 970,661 - SMc00971 0.73 -0.6 970,661 - SMc00971 0.73 -0.4
Or see this region's nucleotide sequence