Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00783 and SMc00784 are separated by 75 nucleotides SMc00784 and SMc00785 are separated by 199 nucleotides
SMc00783: SMc00783 - hypothetical protein, at 804,174 to 805,226
SMc00783
SMc00784: SMc00784 - iron binding protein, at 805,302 to 806,345
SMc00784
SMc00785: SMc00785 - iron-responsive transcriptional regulator, at 806,545 to 807,009
SMc00785
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 804.331 kb on + strand, within SMc00783 at 804.331 kb on + strand, within SMc00783 at 804.331 kb on + strand, within SMc00783 at 804.332 kb on - strand, within SMc00783 at 804.532 kb on - strand, within SMc00783 at 804.532 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.735 kb on - strand, within SMc00783 at 804.840 kb on - strand, within SMc00783 at 804.840 kb on - strand, within SMc00783 at 804.913 kb on - strand, within SMc00783 at 804.913 kb on - strand, within SMc00783 at 805.018 kb on - strand, within SMc00783 at 805.018 kb on - strand, within SMc00783 at 805.225 kb on - strand at 805.456 kb on + strand, within SMc00784 at 805.457 kb on - strand, within SMc00784 at 805.477 kb on + strand, within SMc00784 at 805.478 kb on - strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.678 kb on + strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.679 kb on - strand, within SMc00784 at 805.680 kb on + strand, within SMc00784 at 805.681 kb on + strand, within SMc00784 at 805.682 kb on - strand, within SMc00784 at 805.682 kb on - strand, within SMc00784 at 805.849 kb on + strand, within SMc00784 at 805.849 kb on + strand, within SMc00784 at 805.912 kb on + strand, within SMc00784 at 805.912 kb on + strand, within SMc00784 at 805.913 kb on - strand, within SMc00784 at 805.913 kb on - strand, within SMc00784 at 805.951 kb on + strand, within SMc00784 at 805.951 kb on + strand, within SMc00784 at 805.952 kb on - strand, within SMc00784 at 806.106 kb on + strand, within SMc00784 at 806.215 kb on - strand, within SMc00784 at 806.248 kb on + strand at 806.248 kb on + strand at 806.248 kb on + strand at 806.249 kb on - strand at 806.382 kb on - strand at 806.451 kb on + strand at 807.041 kb on - strand at 807.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 804,331 + SMc00783 0.15 +0.2 804,331 + SMc00783 0.15 +0.2 804,331 + SMc00783 0.15 -1.1 804,332 - SMc00783 0.15 -0.9 804,532 - SMc00783 0.34 +0.2 804,532 - SMc00783 0.34 -0.7 804,735 - SMc00783 0.53 -0.3 804,735 - SMc00783 0.53 -1.6 804,735 - SMc00783 0.53 -0.2 804,840 - SMc00783 0.63 -1.2 804,840 - SMc00783 0.63 +0.8 804,913 - SMc00783 0.70 -0.2 804,913 - SMc00783 0.70 -1.6 805,018 - SMc00783 0.80 -1.9 805,018 - SMc00783 0.80 -1.6 805,225 - -1.9 805,456 + SMc00784 0.15 +0.6 805,457 - SMc00784 0.15 -1.0 805,477 + SMc00784 0.17 -0.6 805,478 - SMc00784 0.17 -2.4 805,678 + SMc00784 0.36 -1.5 805,678 + SMc00784 0.36 +0.4 805,678 + SMc00784 0.36 -2.1 805,678 + SMc00784 0.36 -3.4 805,678 + SMc00784 0.36 -0.8 805,678 + SMc00784 0.36 -1.8 805,678 + SMc00784 0.36 -0.9 805,678 + SMc00784 0.36 -0.6 805,679 - SMc00784 0.36 -1.7 805,679 - SMc00784 0.36 -3.2 805,679 - SMc00784 0.36 -2.9 805,679 - SMc00784 0.36 -0.5 805,679 - SMc00784 0.36 -0.5 805,679 - SMc00784 0.36 -1.4 805,680 + SMc00784 0.36 +0.1 805,681 + SMc00784 0.36 -0.7 805,682 - SMc00784 0.36 -0.5 805,682 - SMc00784 0.36 -0.3 805,849 + SMc00784 0.52 -0.7 805,849 + SMc00784 0.52 -1.4 805,912 + SMc00784 0.58 -1.3 805,912 + SMc00784 0.58 -1.0 805,913 - SMc00784 0.59 -2.4 805,913 - SMc00784 0.59 -2.2 805,951 + SMc00784 0.62 -0.8 805,951 + SMc00784 0.62 -1.7 805,952 - SMc00784 0.62 -1.0 806,106 + SMc00784 0.77 -0.7 806,215 - SMc00784 0.87 -0.5 806,248 + -1.9 806,248 + -0.6 806,248 + -2.2 806,249 - -2.0 806,382 - +0.2 806,451 + +0.9 807,041 - +0.8 807,138 + +0.8
Or see this region's nucleotide sequence