Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00766 and SMc00767 are separated by 165 nucleotides SMc00767 and SMc00768 are separated by 111 nucleotides SMc00768 and SMc00769 are separated by 227 nucleotides
SMc00766: SMc00766 - transcriptional regulator, at 778,588 to 779,463
SMc00766
SMc00767: SMc00767 - hypothetical protein, at 779,629 to 779,868
SMc00767
SMc00768: SMc00768 - isocitrate lyase, at 779,980 to 781,269
SMc00768
SMc00769: SMc00769 - hypothetical protein, at 781,497 to 782,909
SMc00769
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -2
-1
0
1 at 779.038 kb on + strand, within SMc00766 at 779.039 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.072 kb on - strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.142 kb on + strand, within SMc00766 at 779.143 kb on - strand, within SMc00766 at 779.144 kb on + strand, within SMc00766 at 779.144 kb on + strand, within SMc00766 at 779.388 kb on - strand at 779.388 kb on - strand at 779.419 kb on - strand at 779.603 kb on + strand at 779.623 kb on + strand at 779.623 kb on + strand at 779.860 kb on + strand at 779.861 kb on - strand at 779.861 kb on - strand at 780.117 kb on + strand, within SMc00768 at 780.118 kb on - strand, within SMc00768 at 780.164 kb on + strand, within SMc00768 at 780.216 kb on - strand, within SMc00768 at 780.260 kb on + strand, within SMc00768 at 780.261 kb on - strand, within SMc00768 at 780.346 kb on - strand, within SMc00768 at 780.346 kb on - strand, within SMc00768 at 780.348 kb on - strand, within SMc00768 at 780.507 kb on - strand, within SMc00768 at 780.536 kb on + strand, within SMc00768 at 780.536 kb on + strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.537 kb on - strand, within SMc00768 at 780.974 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.025 kb on + strand, within SMc00768 at 781.026 kb on - strand, within SMc00768 at 781.026 kb on - strand, within SMc00768 at 781.408 kb on + strand at 781.408 kb on + strand at 781.408 kb on + strand at 781.409 kb on - strand at 781.409 kb on - strand at 781.602 kb on + strand at 781.603 kb on - strand at 781.603 kb on - strand at 781.671 kb on + strand at 781.671 kb on + strand, within SMc00769 at 781.671 kb on + strand, within SMc00769 at 781.672 kb on - strand, within SMc00769 at 781.904 kb on + strand, within SMc00769 at 781.904 kb on + strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.905 kb on - strand, within SMc00769 at 781.988 kb on - strand, within SMc00769 at 782.108 kb on + strand, within SMc00769 at 782.108 kb on + strand, within SMc00769 at 782.109 kb on - strand, within SMc00769 at 782.109 kb on - strand, within SMc00769 at 782.265 kb on - strand, within SMc00769
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 779,038 + SMc00766 0.51 -0.8 779,039 - SMc00766 0.51 -0.4 779,072 - SMc00766 0.55 +0.2 779,072 - SMc00766 0.55 -0.3 779,072 - SMc00766 0.55 -0.1 779,142 + SMc00766 0.63 -0.3 779,142 + SMc00766 0.63 -1.1 779,142 + SMc00766 0.63 -0.6 779,142 + SMc00766 0.63 +0.4 779,143 - SMc00766 0.63 -1.4 779,144 + SMc00766 0.63 -0.8 779,144 + SMc00766 0.63 -0.7 779,388 - +0.2 779,388 - +1.7 779,419 - -0.1 779,603 + +0.5 779,623 + -0.4 779,623 + +0.2 779,860 + -0.5 779,861 - -0.4 779,861 - +0.6 780,117 + SMc00768 0.11 +0.2 780,118 - SMc00768 0.11 +1.4 780,164 + SMc00768 0.14 +0.5 780,216 - SMc00768 0.18 +0.4 780,260 + SMc00768 0.22 -0.6 780,261 - SMc00768 0.22 +0.1 780,346 - SMc00768 0.28 -0.2 780,346 - SMc00768 0.28 -0.7 780,348 - SMc00768 0.29 +0.2 780,507 - SMc00768 0.41 +0.6 780,536 + SMc00768 0.43 -0.3 780,536 + SMc00768 0.43 -1.3 780,537 - SMc00768 0.43 -1.5 780,537 - SMc00768 0.43 -0.3 780,537 - SMc00768 0.43 +0.7 780,974 + SMc00768 0.77 -0.6 781,025 + SMc00768 0.81 -0.7 781,025 + SMc00768 0.81 -0.2 781,025 + SMc00768 0.81 +0.2 781,025 + SMc00768 0.81 -0.4 781,026 - SMc00768 0.81 -0.7 781,026 - SMc00768 0.81 -0.2 781,408 + +0.3 781,408 + +0.6 781,408 + +0.4 781,409 - -0.9 781,409 - -0.1 781,602 + -0.0 781,603 - +0.6 781,603 - +1.1 781,671 + +1.4 781,671 + SMc00769 0.12 +1.2 781,671 + SMc00769 0.12 -2.1 781,672 - SMc00769 0.12 +0.2 781,904 + SMc00769 0.29 -0.1 781,904 + SMc00769 0.29 -0.6 781,905 - SMc00769 0.29 -1.7 781,905 - SMc00769 0.29 +0.1 781,905 - SMc00769 0.29 +0.2 781,905 - SMc00769 0.29 -0.5 781,988 - SMc00769 0.35 +1.3 782,108 + SMc00769 0.43 -0.7 782,108 + SMc00769 0.43 -0.1 782,109 - SMc00769 0.43 -0.6 782,109 - SMc00769 0.43 -0.0 782,265 - SMc00769 0.54 -2.3
Or see this region's nucleotide sequence